Wall clock time and date at job start Sat Apr 11 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 120.00213 * 2 1 4 4 O 1.21586 * 119.99952 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00045 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00191 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46717 * 60.66510 * 6 5 3 8 8 C 1.53005 * 109.46842 * 300.67078 * 6 5 3 9 9 C 1.50693 * 109.47375 * 180.66759 * 6 5 3 10 10 O 1.21283 * 120.00297 * 140.44513 * 9 6 5 11 11 N 1.34781 * 120.00150 * 320.44846 * 9 6 5 12 12 C 1.46928 * 120.62619 * 355.52192 * 11 9 6 13 13 C 1.53161 * 108.76476 * 233.63010 * 12 11 9 14 14 C 1.53037 * 109.32980 * 305.35668 * 13 12 11 15 15 H 1.08996 * 109.46391 * 301.35962 * 14 13 12 16 16 C 1.53001 * 109.46284 * 181.38507 * 14 13 12 17 17 C 1.53044 * 109.52621 * 61.37632 * 14 13 12 18 18 H 1.08994 * 109.49654 * 58.62339 * 17 14 13 19 19 C 1.52995 * 109.49734 * 178.69112 * 17 14 13 20 20 N 1.46503 * 109.47094 * 184.99713 * 19 17 14 21 21 C 1.36935 * 120.00025 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00150 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00165 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00379 * 180.02562 * 23 21 20 25 25 Si 1.86808 * 119.99784 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47054 * 90.00339 * 25 23 21 27 27 H 1.48498 * 109.47064 * 210.00318 * 25 23 21 28 28 H 1.48501 * 109.46855 * 330.00103 * 25 23 21 29 29 C 1.46920 * 120.63075 * 175.54673 * 11 9 6 30 30 H 1.09002 * 109.47028 * 299.99674 * 1 2 3 31 31 H 1.09002 * 109.47297 * 59.99513 * 1 2 3 32 32 H 1.09001 * 109.47381 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99544 * 179.97438 * 2 1 3 34 34 H 0.96998 * 120.00167 * 0.02562 * 5 3 2 35 35 H 1.09010 * 109.46716 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47737 * 300.00068 * 7 6 5 37 37 H 1.09003 * 109.46981 * 60.00734 * 7 6 5 38 38 H 1.09004 * 109.47134 * 299.99455 * 8 6 5 39 39 H 1.08999 * 109.47363 * 60.00086 * 8 6 5 40 40 H 1.09001 * 109.46501 * 179.97438 * 8 6 5 41 41 H 1.09001 * 109.58928 * 353.41846 * 12 11 9 42 42 H 1.09002 * 109.58404 * 113.69992 * 12 11 9 43 43 H 1.09005 * 109.47644 * 185.40638 * 13 12 11 44 44 H 1.09000 * 109.50415 * 65.32128 * 13 12 11 45 45 H 1.09001 * 109.46964 * 299.97795 * 16 14 13 46 46 H 1.09008 * 109.47004 * 59.96990 * 16 14 13 47 47 H 1.08996 * 109.47438 * 179.97438 * 16 14 13 48 48 H 1.09004 * 109.47297 * 304.99756 * 19 17 14 49 49 H 1.09001 * 109.47408 * 64.99867 * 19 17 14 50 50 H 0.96999 * 119.99747 * 359.97438 * 20 19 17 51 51 H 0.97000 * 120.00538 * 179.97438 * 24 23 21 52 52 H 1.09000 * 109.58724 * 6.58034 * 29 11 9 53 53 H 1.09010 * 109.58531 * 246.15344 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2192 2.4358 0.0011 7 6 3.8617 3.2305 1.2587 8 6 3.8375 3.2457 -1.2397 9 6 5.7007 2.1605 -0.0150 10 8 6.4385 2.8499 -0.6868 11 7 6.2060 1.1480 0.7173 12 6 5.3408 0.3664 1.6113 13 6 5.9530 0.3681 3.0152 14 6 7.3962 -0.1355 2.9390 15 1 7.4086 -1.1397 2.5154 16 6 7.9997 -0.1677 4.3446 17 6 8.2190 0.8021 2.0524 18 1 8.1871 1.8115 2.4623 19 6 9.6690 0.3165 2.0031 20 7 10.4809 1.2783 1.2533 21 6 11.8201 1.0535 1.0773 22 1 12.2780 0.1675 1.4916 23 6 12.5895 1.9651 0.3673 24 7 13.8767 1.7488 0.1978 25 14 11.7976 3.4980 -0.3487 26 1 11.8595 4.5982 0.6468 27 1 12.5247 3.9022 -1.5789 28 1 10.3793 3.2123 -0.6833 29 6 7.6325 0.8055 0.6372 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.9500 -0.8401 0.0004 34 1 3.9716 0.3271 0.0005 35 1 4.4065 4.1747 1.2589 36 1 2.7902 3.4297 1.2703 37 1 4.1337 2.6536 2.1426 38 1 4.0922 2.6795 -2.1356 39 1 2.7659 3.4449 -1.2280 40 1 4.3822 4.1898 -1.2389 41 1 4.3484 0.8161 1.6447 42 1 5.2658 -0.6572 1.2441 43 1 5.3730 -0.2869 3.6654 44 1 5.9421 1.3817 3.4157 45 1 7.9874 0.8364 4.7684 46 1 7.4140 -0.8358 4.9762 47 1 9.0274 -0.5268 4.2906 48 1 10.0569 0.2267 3.0178 49 1 9.7102 -0.6553 1.5110 50 1 10.0697 2.0743 0.8815 51 1 14.4142 2.3856 -0.2987 52 1 8.1522 1.5450 0.0280 53 1 7.7464 -0.1831 0.1921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133332871.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:10 Heat of formation + Delta-G solvation = -61.719927 kcal Electronic energy + Delta-G solvation = -32206.715113 eV Core-core repulsion = 28113.369228 eV Total energy + Delta-G solvation = -4093.345884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.39620 -40.75777 -39.41996 -37.26371 -36.63620 -35.54964 -34.99820 -33.70667 -32.49157 -31.86535 -29.40182 -28.46520 -27.76623 -27.21179 -25.28978 -24.63234 -23.56453 -22.59117 -21.72388 -21.17332 -20.46957 -19.64715 -19.28622 -18.53744 -17.29371 -16.74921 -16.69326 -16.52720 -16.34508 -15.95719 -15.81107 -15.57835 -15.32905 -15.03241 -14.91837 -14.63830 -14.54657 -14.32950 -14.22905 -14.03585 -13.79255 -13.51894 -13.35738 -13.24746 -13.10938 -12.98310 -12.90332 -12.81279 -12.66337 -12.59974 -12.41132 -12.26844 -12.01983 -11.89919 -11.81077 -11.44332 -11.30967 -11.22458 -11.01581 -10.71976 -10.31876 -9.82386 -9.76145 -9.30140 -8.07293 -5.38464 1.16637 1.31799 1.35272 1.41350 1.71070 1.81102 2.12596 2.42027 3.16413 3.24168 3.25031 3.50709 3.74049 3.76353 3.80157 3.88338 4.00467 4.02134 4.22497 4.34405 4.47663 4.49253 4.55510 4.58670 4.62518 4.66251 4.73347 4.74974 4.76501 4.77576 4.82325 4.91399 4.94429 5.05225 5.05972 5.08960 5.12609 5.16122 5.21094 5.23697 5.29726 5.41091 5.50126 5.55073 5.57535 5.73420 5.90283 6.17937 6.23621 6.92682 7.03181 7.04228 7.56388 7.82264 7.98114 9.14288 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.003193 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.541727 B = 8766.031716 C =10001.422614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.736 5.736 3 C 0.702 3.298 4 O -0.615 6.615 5 N -0.730 5.730 6 C 0.193 3.807 7 C -0.156 4.156 8 C -0.146 4.146 9 C 0.511 3.489 10 O -0.572 6.572 11 N -0.598 5.598 12 C 0.071 3.929 13 C -0.121 4.121 14 C -0.077 4.077 15 H 0.090 0.910 16 C -0.148 4.148 17 C -0.094 4.094 18 H 0.056 0.944 19 C 0.159 3.841 20 N -0.762 5.762 21 C -0.227 4.227 22 H 0.065 0.935 23 C -0.056 4.056 24 N -0.980 5.980 25 Si 0.942 3.058 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.120 3.880 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.414 0.586 34 H 0.412 0.588 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.038 0.962 49 H 0.031 0.969 50 H 0.361 0.639 51 H 0.258 0.742 52 H 0.053 0.947 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.671 -9.358 5.779 34.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.392 5.392 3 C 0.402 3.598 4 O -0.495 6.495 5 N -0.392 5.392 6 C 0.102 3.898 7 C -0.215 4.215 8 C -0.204 4.204 9 C 0.298 3.702 10 O -0.450 6.450 11 N -0.330 5.330 12 C -0.050 4.050 13 C -0.159 4.159 14 C -0.096 4.096 15 H 0.108 0.892 16 C -0.205 4.205 17 C -0.113 4.113 18 H 0.075 0.925 19 C 0.033 3.967 20 N -0.407 5.407 21 C -0.358 4.358 22 H 0.083 0.917 23 C -0.248 4.248 24 N -0.631 5.631 25 Si 0.771 3.229 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.192 1.192 29 C -0.003 4.003 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.250 0.750 34 H 0.252 0.748 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.122 0.878 43 H 0.130 0.870 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.049 0.951 50 H 0.193 0.807 51 H 0.067 0.933 52 H 0.072 0.928 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -32.674 -8.198 5.452 34.125 hybrid contribution 1.187 0.672 -0.858 1.611 sum -31.488 -7.527 4.594 32.699 Atomic orbital electron populations 1.21537 0.77105 1.04027 1.01329 1.44875 1.08318 1.06731 1.79246 1.16070 0.81333 0.84873 0.77505 1.90872 1.68434 1.31529 1.58713 1.45575 1.04906 1.08657 1.80086 1.20090 0.85359 0.85397 0.98917 1.22239 1.04434 0.99932 0.94853 1.22007 1.03327 0.99828 0.95241 1.20974 0.90469 0.79857 0.78942 1.90761 1.61345 1.48919 1.43998 1.48275 1.09593 1.32422 1.42743 1.22814 0.95030 0.97435 0.89682 1.21968 0.95137 1.02551 0.96288 1.21078 0.94338 0.98840 0.95302 0.89199 1.21873 1.00969 1.01853 0.95800 1.21639 0.94219 1.00228 0.95255 0.92549 1.20935 0.89033 0.91901 0.94880 1.42881 1.05855 1.25879 1.66122 1.19067 0.84642 1.05179 1.26881 0.91694 1.25324 0.95886 1.01674 1.01949 1.69840 1.06384 1.38837 1.48006 0.85608 0.78281 0.81020 0.78025 1.20626 1.21973 1.19186 1.21561 0.80196 1.01201 0.97349 0.93040 0.93691 0.87144 0.74968 0.74773 0.91860 0.89240 0.90379 0.93049 0.89559 0.91895 0.86392 0.87783 0.87009 0.92396 0.93580 0.90303 0.93322 0.94404 0.95056 0.80669 0.93321 0.92824 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 10.70 127.77 1.37 2.07 16 2 N -0.74 -5.98 5.72 -500.19 -2.86 -8.84 16 3 C 0.70 11.18 7.98 179.06 1.43 12.61 16 4 O -0.62 -14.66 12.55 -3.99 -0.05 -14.71 16 5 N -0.73 -10.47 3.23 -441.45 -1.42 -11.89 16 6 C 0.19 4.10 0.63 2.86 0.00 4.10 16 7 C -0.16 -3.08 8.15 71.98 0.59 -2.50 16 8 C -0.15 -3.58 7.86 71.98 0.57 -3.01 16 9 C 0.51 13.93 6.55 87.65 0.57 14.50 16 10 O -0.57 -21.84 15.45 -3.04 -0.05 -21.88 16 11 N -0.60 -13.21 2.93 -818.96 -2.40 -15.60 16 12 C 0.07 0.83 4.19 86.35 0.36 1.19 16 13 C -0.12 -1.46 5.36 30.66 0.16 -1.30 16 14 C -0.08 -1.35 2.23 -10.77 -0.02 -1.37 16 15 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 16 C -0.15 -2.65 8.82 71.98 0.63 -2.02 16 17 C -0.09 -2.60 1.92 -10.72 -0.02 -2.62 16 18 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 19 C 0.16 5.78 5.41 86.38 0.47 6.25 16 20 N -0.76 -36.77 5.18 -343.45 -1.78 -38.55 16 21 C -0.23 -13.22 10.47 84.03 0.88 -12.34 16 22 H 0.07 4.06 8.06 -2.91 -0.02 4.03 16 23 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 24 N -0.98 -64.27 13.97 21.65 0.30 -63.96 16 25 Si 0.94 49.27 27.74 68.60 1.90 51.17 16 26 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 28 H -0.27 -13.53 6.52 99.48 0.65 -12.88 16 29 C 0.12 3.43 5.53 86.36 0.48 3.91 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 31 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.41 0.62 8.84 -92.71 -0.82 -0.20 16 34 H 0.41 3.93 5.96 -92.71 -0.55 3.37 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.89 6.21 -2.39 -0.01 1.88 16 37 H 0.08 1.26 6.60 -2.39 -0.02 1.24 16 38 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.09 2.15 6.12 -2.39 -0.01 2.14 16 40 H 0.06 1.68 7.90 -2.39 -0.02 1.66 16 41 H 0.12 1.16 3.57 -2.39 -0.01 1.15 16 42 H 0.10 0.59 7.92 -2.39 -0.02 0.57 16 43 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.05 1.05 6.29 -2.39 -0.02 1.04 16 48 H 0.04 1.39 6.14 -2.38 -0.01 1.38 16 49 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.36 17.60 4.76 -92.71 -0.44 17.16 16 51 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 52 H 0.05 2.06 6.21 -2.39 -0.01 2.05 16 53 H 0.08 2.18 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -83.52 397.53 0.65 -82.87 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.93 Total: 24.91 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 7.93 Total: 16.48 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -8.16 Total: -138.85 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.10 Total: -36.59 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 1.90 Total: 51.17 kcal Total: -83.52 0.65 -82.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133332871.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.149 kcal (2) G-P(sol) polarization free energy of solvation -83.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds