Wall clock time and date at job start Sat Apr 11 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47063 * 2 1 4 4 C 1.46904 * 110.99924 * 287.97449 * 3 2 1 5 5 C 1.50698 * 109.46891 * 84.95658 * 4 3 2 6 6 O 1.21288 * 120.00289 * 7.13480 * 5 4 3 7 7 N 1.34785 * 119.99886 * 187.14441 * 5 4 3 8 8 C 1.37090 * 120.00234 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00063 * 359.97438 * 8 7 5 10 10 C 1.38947 * 120.00083 * 179.97438 * 8 7 5 11 11 N 1.31414 * 120.00045 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00010 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46843 * 90.00469 * 12 10 8 14 14 H 1.48503 * 109.47159 * 210.00037 * 12 10 8 15 15 H 1.48500 * 109.47119 * 330.00433 * 12 10 8 16 16 C 1.46901 * 110.99922 * 164.02045 * 3 2 1 17 17 H 1.08998 * 109.46630 * 178.94946 * 16 3 2 18 18 C 1.53002 * 109.47139 * 58.95458 * 16 3 2 19 19 C 1.52996 * 109.46927 * 298.95133 * 16 3 2 20 20 N 1.46501 * 109.47491 * 304.99855 * 19 16 3 21 21 C 1.34775 * 120.00035 * 180.02562 * 20 19 16 22 22 O 1.21283 * 119.99951 * 359.97438 * 21 20 19 23 23 C 1.50696 * 119.99795 * 180.02562 * 21 20 19 24 24 H 1.08999 * 110.33510 * 320.79565 * 23 21 20 25 25 C 1.54905 * 110.37673 * 83.16913 * 23 21 20 26 26 C 1.55145 * 101.65476 * 155.89630 * 25 23 21 27 27 C 1.54315 * 103.01688 * 324.34972 * 26 25 23 28 28 N 1.47436 * 107.23780 * 22.28166 * 27 26 25 29 29 C 1.46907 * 111.00091 * 123.25350 * 28 27 26 30 30 H 1.09000 * 109.46651 * 68.73190 * 1 2 3 31 31 H 1.08999 * 109.47462 * 308.73296 * 1 2 3 32 32 H 1.08996 * 109.47065 * 188.72597 * 1 2 3 33 33 H 1.09004 * 109.46369 * 119.99487 * 2 1 3 34 34 H 1.08998 * 109.47610 * 239.99500 * 2 1 3 35 35 H 1.08990 * 109.46886 * 204.95587 * 4 3 2 36 36 H 1.08995 * 109.46731 * 324.95407 * 4 3 2 37 37 H 0.97006 * 119.99448 * 359.97438 * 7 5 4 38 38 H 0.97003 * 119.99929 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.46837 * 300.00045 * 18 16 3 40 40 H 1.09001 * 109.47194 * 59.99820 * 18 16 3 41 41 H 1.08994 * 109.46972 * 179.97438 * 18 16 3 42 42 H 1.08995 * 109.47231 * 65.00408 * 19 16 3 43 43 H 1.09000 * 109.46770 * 185.00137 * 19 16 3 44 44 H 0.96994 * 119.99562 * 0.02562 * 20 19 16 45 45 H 1.08996 * 110.99472 * 273.99399 * 25 23 21 46 46 H 1.09001 * 110.98730 * 37.80979 * 25 23 21 47 47 H 1.09003 * 110.70192 * 205.96438 * 26 25 23 48 48 H 1.08999 * 110.84974 * 82.80689 * 26 25 23 49 49 H 1.08997 * 109.88764 * 262.87035 * 27 26 25 50 50 H 1.09003 * 109.88352 * 141.68883 * 27 26 25 51 51 H 1.08994 * 109.47187 * 299.15896 * 29 28 27 52 52 H 1.08996 * 109.46828 * 59.16146 * 29 28 27 53 53 H 1.08998 * 109.46622 * 179.15778 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7961 2.0224 -1.3045 5 6 0.3986 2.5837 -1.3564 6 8 -0.2937 2.5805 -0.3604 7 7 -0.0823 3.0892 -2.5096 8 6 -1.3535 3.6004 -2.5567 9 1 -1.9698 3.5976 -1.6699 10 6 -1.8489 4.1220 -3.7455 11 7 -3.0676 4.6115 -3.7907 12 14 -0.7826 4.1274 -5.2792 13 1 -0.9945 2.8661 -6.0338 14 1 -1.1518 5.2839 -6.1346 15 1 0.6459 4.2366 -4.8886 16 6 3.4382 1.4418 0.3776 17 1 3.7798 2.4766 0.3514 18 6 4.2616 0.6079 -0.6061 19 6 3.6125 0.8826 1.7909 20 7 2.7331 1.6046 2.7138 21 6 2.7177 1.2811 4.0220 22 8 3.4317 0.3920 4.4353 23 6 1.8127 2.0234 4.9711 24 1 1.7904 3.0842 4.7217 25 6 0.3834 1.4274 4.9307 26 6 -0.1671 1.8388 6.3216 27 6 1.0735 1.7293 7.2328 28 7 2.2622 1.8321 6.3666 29 6 3.1321 2.9356 6.7953 30 1 -0.3632 0.3728 -0.9577 31 1 -0.3634 0.6430 0.8016 32 1 -0.3633 -1.0157 0.1559 33 1 1.8932 -0.5138 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 2.5167 2.8282 -1.4433 36 1 1.9205 1.2834 -2.0960 37 1 0.4715 3.0920 -3.3061 38 1 -3.4134 4.9760 -4.6205 39 1 3.9198 -0.4268 -0.5801 40 1 4.1373 1.0064 -1.6131 41 1 5.3141 0.6505 -0.3262 42 1 3.3548 -0.1764 1.7970 43 1 4.6489 1.0061 2.1052 44 1 2.1619 2.3154 2.3831 45 1 -0.2042 1.8760 4.1299 46 1 0.4155 0.3426 4.8288 47 1 -0.9463 1.1494 6.6469 48 1 -0.5428 2.8618 6.3031 49 1 1.0718 0.7686 7.7477 50 1 1.0727 2.5419 7.9594 51 1 2.5850 3.8760 6.7301 52 1 3.4484 2.7698 7.8251 53 1 4.0085 2.9794 6.1487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152386654.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:57 Heat of formation + Delta-G solvation = -73.662241 kcal Electronic energy + Delta-G solvation = -31405.217955 eV Core-core repulsion = 27311.354213 eV Total energy + Delta-G solvation = -4093.863742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.25425 -40.61120 -39.30470 -38.52951 -35.92004 -35.28739 -33.64920 -33.15223 -32.81209 -31.32112 -30.42651 -28.11188 -27.22496 -26.57318 -25.71388 -23.83323 -23.12151 -22.02740 -21.30163 -20.90033 -20.49050 -19.95161 -18.32925 -17.80171 -17.31068 -17.15496 -16.80874 -16.61603 -16.39287 -15.99134 -15.85437 -15.43659 -15.06856 -14.97368 -14.65962 -14.49405 -14.34024 -14.29632 -14.07276 -13.81678 -13.62196 -13.55785 -13.44168 -13.21243 -13.07316 -13.01712 -12.84442 -12.52752 -12.47346 -12.34735 -12.28882 -12.11144 -12.04432 -11.95942 -11.79065 -11.69252 -11.59988 -11.29361 -10.73937 -10.21653 -10.10245 -9.93226 -9.30236 -9.14677 -8.34476 -5.92676 1.31915 1.37549 1.45634 1.70192 2.11602 2.15554 2.26946 2.62571 3.12060 3.23151 3.36086 3.57986 3.67637 3.74287 3.95959 4.00508 4.09214 4.14274 4.18834 4.30862 4.33844 4.41373 4.41908 4.46012 4.51497 4.52813 4.60138 4.66158 4.68848 4.75563 4.77426 4.85450 4.88393 4.93688 4.95910 4.96736 5.03334 5.06601 5.19384 5.25704 5.31881 5.54757 5.58470 5.62318 5.84351 5.99007 6.05984 6.11245 6.23167 6.69299 6.70020 7.00463 7.37540 7.52881 8.12761 8.83510 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.002802 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.271698 B = 9989.687690 C =11212.431313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.062 3.938 3 N -0.522 5.522 4 C 0.054 3.946 5 C 0.458 3.542 6 O -0.586 6.586 7 N -0.603 5.603 8 C -0.314 4.314 9 H 0.057 0.943 10 C -0.019 4.019 11 N -0.941 5.941 12 Si 0.960 3.040 13 H -0.262 1.262 14 H -0.280 1.280 15 H -0.230 1.230 16 C 0.074 3.926 17 H 0.101 0.899 18 C -0.180 4.180 19 C 0.133 3.867 20 N -0.710 5.710 21 C 0.519 3.481 22 O -0.569 6.569 23 C 0.056 3.944 24 H 0.087 0.913 25 C -0.115 4.115 26 C -0.135 4.135 27 C 0.044 3.956 28 N -0.537 5.537 29 C 0.023 3.977 30 H 0.026 0.974 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.385 0.615 38 H 0.275 0.725 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.412 0.588 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.040 0.960 52 H 0.081 0.919 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.631 -5.598 11.914 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.065 4.065 3 N -0.247 5.247 4 C -0.078 4.078 5 C 0.245 3.755 6 O -0.468 6.468 7 N -0.246 5.246 8 C -0.443 4.443 9 H 0.075 0.925 10 C -0.217 4.217 11 N -0.583 5.583 12 Si 0.781 3.219 13 H -0.187 1.187 14 H -0.206 1.206 15 H -0.153 1.153 16 C -0.034 4.034 17 H 0.119 0.881 18 C -0.239 4.239 19 C 0.009 3.991 20 N -0.362 5.362 21 C 0.305 3.695 22 O -0.448 6.448 23 C -0.056 4.056 24 H 0.104 0.896 25 C -0.153 4.153 26 C -0.173 4.173 27 C -0.083 4.083 28 N -0.262 5.262 29 C -0.125 4.125 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.220 0.780 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.249 0.751 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.093 0.907 51 H 0.059 0.941 52 H 0.100 0.900 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.565 -6.338 13.198 22.107 hybrid contribution -0.520 0.843 -1.879 2.124 sum 16.044 -5.495 11.319 20.390 Atomic orbital electron populations 1.21706 0.96148 0.99729 1.01276 1.22097 0.94889 0.88440 1.01104 1.61590 1.16938 1.17640 1.28511 1.21853 0.93650 1.00440 0.91818 1.20868 0.90191 0.81611 0.82850 1.90541 1.61199 1.59475 1.35560 1.42097 1.13806 1.57317 1.11417 1.18956 0.90485 1.36987 0.97888 0.92461 1.26026 0.97583 0.96249 1.01820 1.69810 1.17785 1.41647 1.29050 0.85429 0.79921 0.78836 0.77728 1.18690 1.20559 1.15334 1.22087 0.86558 1.01489 0.93277 0.88099 1.22398 1.01342 1.00491 0.99655 1.21420 0.94099 0.95937 0.87658 1.45905 1.44072 1.39307 1.06953 1.20673 0.82470 0.83436 0.82895 1.90637 1.43478 1.32730 1.77968 1.22496 0.94308 0.99157 0.89639 0.89570 1.22599 0.92477 1.00974 0.99288 1.22788 0.98102 1.02949 0.93457 1.22889 0.87512 1.02626 0.95285 1.63054 1.18207 1.44468 1.00432 1.22558 0.96680 0.91288 1.01940 0.95528 0.93272 0.92811 0.90325 0.93436 0.86610 0.90387 0.78005 0.91518 0.92158 0.91085 0.90253 0.92405 0.90706 0.75142 0.89738 0.91691 0.89206 0.90086 0.90536 0.90681 0.94111 0.89993 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 8.41 71.98 0.61 -3.70 16 2 C 0.06 1.57 4.57 86.30 0.39 1.96 16 3 N -0.52 -12.90 3.46 -875.54 -3.03 -15.93 16 4 C 0.05 1.43 4.41 85.56 0.38 1.81 16 5 C 0.46 18.70 6.22 87.65 0.54 19.25 16 6 O -0.59 -28.90 13.09 -3.06 -0.04 -28.94 16 7 N -0.60 -26.84 5.09 -306.99 -1.56 -28.40 16 8 C -0.31 -17.69 10.16 84.04 0.85 -16.84 16 9 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 10 C -0.02 -1.05 5.50 84.93 0.47 -0.58 16 11 N -0.94 -56.29 13.96 21.66 0.30 -55.98 16 12 Si 0.96 38.27 27.74 68.60 1.90 40.17 16 13 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 14 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 15 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 16 C 0.07 1.33 2.41 44.91 0.11 1.44 16 17 H 0.10 1.65 7.93 -2.39 -0.02 1.63 16 18 C -0.18 -2.46 8.61 71.98 0.62 -1.84 16 19 C 0.13 2.74 4.75 86.38 0.41 3.15 16 20 N -0.71 -16.71 5.39 -463.07 -2.50 -19.21 16 21 C 0.52 14.13 7.11 87.66 0.62 14.76 16 22 O -0.57 -19.66 16.59 -3.04 -0.05 -19.71 16 23 C 0.06 1.28 2.84 44.64 0.13 1.41 16 24 H 0.09 1.76 7.77 -2.39 -0.02 1.74 16 25 C -0.11 -2.51 6.48 31.98 0.21 -2.30 16 26 C -0.13 -2.28 6.94 31.78 0.22 -2.06 16 27 C 0.04 0.78 6.90 86.65 0.60 1.37 16 28 N -0.54 -12.09 4.69 -891.03 -4.18 -16.27 16 29 C 0.02 0.42 9.12 127.69 1.17 1.59 16 30 H 0.03 1.01 6.22 -2.39 -0.01 1.00 16 31 H 0.05 1.88 7.14 -2.39 -0.02 1.87 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.89 5.77 -2.39 -0.01 1.88 16 34 H 0.05 1.05 6.84 -2.39 -0.02 1.03 16 35 H 0.12 2.47 7.66 -2.39 -0.02 2.45 16 36 H 0.08 1.77 7.44 -2.39 -0.02 1.76 16 37 H 0.39 14.34 5.76 -92.70 -0.53 13.81 16 38 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.06 0.87 6.76 -2.39 -0.02 0.86 16 40 H 0.07 0.90 7.24 -2.39 -0.02 0.89 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 1.32 6.37 -2.39 -0.02 1.30 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.41 9.82 8.14 -92.71 -0.75 9.07 16 45 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.06 1.61 8.05 -2.39 -0.02 1.59 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 1.04 7.58 -2.39 -0.02 1.02 16 51 H 0.04 0.62 8.09 -2.39 -0.02 0.60 16 52 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 53 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.74 408.91 -2.26 -79.00 By element: Atomic # 1 Polarization: 46.29 SS G_CDS: -0.43 Total: 45.85 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 7.32 Total: 19.41 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -10.97 Total: -135.79 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.09 Total: -48.65 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -76.74 -2.26 -79.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152386654.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.340 kcal (2) G-P(sol) polarization free energy of solvation -76.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds