Wall clock time and date at job start Sat Apr 11 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.46909 * 2 1 4 4 C 1.46907 * 110.99466 * 164.53641 * 3 2 1 5 5 C 1.50693 * 109.47226 * 283.79019 * 4 3 2 6 6 O 1.21297 * 120.00255 * 0.61159 * 5 4 3 7 7 N 1.34779 * 120.00100 * 180.61021 * 5 4 3 8 8 C 1.37094 * 119.99863 * 180.02562 * 7 5 4 9 9 H 1.08003 * 120.00495 * 359.97438 * 8 7 5 10 10 C 1.38958 * 119.99911 * 179.97438 * 8 7 5 11 11 N 1.31415 * 119.99574 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00052 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.46798 * 90.00511 * 12 10 8 14 14 H 1.48504 * 109.47265 * 210.00030 * 12 10 8 15 15 H 1.48493 * 109.47502 * 330.00171 * 12 10 8 16 16 C 1.46894 * 110.99899 * 288.48876 * 3 2 1 17 17 H 1.09002 * 109.47449 * 49.85947 * 16 3 2 18 18 C 1.53002 * 109.47145 * 289.85972 * 16 3 2 19 19 C 1.52995 * 109.47137 * 169.86091 * 16 3 2 20 20 N 1.46504 * 109.46962 * 304.81156 * 19 16 3 21 21 C 1.34774 * 120.00101 * 184.71768 * 20 19 16 22 22 O 1.21290 * 120.00072 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.00113 * 180.02562 * 21 20 19 24 24 H 1.08999 * 110.36744 * 40.70139 * 23 21 20 25 25 C 1.54381 * 110.41216 * 278.35188 * 23 21 20 26 26 C 1.54259 * 105.06273 * 217.37084 * 25 23 21 27 27 C 1.54384 * 105.05810 * 359.97438 * 26 25 23 28 28 N 1.48564 * 110.41326 * 163.05308 * 23 21 20 29 29 C 1.46898 * 110.99781 * 277.81670 * 28 23 21 30 30 H 1.09001 * 109.47196 * 65.80045 * 1 2 3 31 31 H 1.09003 * 109.47018 * 185.79607 * 1 2 3 32 32 H 1.08995 * 109.47511 * 305.80196 * 1 2 3 33 33 H 1.08998 * 109.47170 * 239.99719 * 2 1 3 34 34 H 1.09005 * 109.47006 * 119.99291 * 2 1 3 35 35 H 1.08995 * 109.47019 * 43.79472 * 4 3 2 36 36 H 1.09007 * 109.46287 * 163.79347 * 4 3 2 37 37 H 0.96998 * 119.99649 * 0.02562 * 7 5 4 38 38 H 0.97002 * 119.99718 * 179.97438 * 11 10 8 39 39 H 1.08993 * 109.47327 * 60.00012 * 18 16 3 40 40 H 1.08998 * 109.47060 * 180.02562 * 18 16 3 41 41 H 1.09004 * 109.46890 * 299.99750 * 18 16 3 42 42 H 1.08999 * 109.47195 * 64.81216 * 19 16 3 43 43 H 1.08996 * 109.47411 * 184.81872 * 19 16 3 44 44 H 0.97001 * 119.99901 * 4.72587 * 20 19 16 45 45 H 1.08997 * 110.32554 * 336.26492 * 25 23 21 46 46 H 1.08997 * 110.32448 * 98.37051 * 25 23 21 47 47 H 1.08990 * 110.32801 * 118.89504 * 26 25 23 48 48 H 1.08997 * 110.32167 * 241.10591 * 26 25 23 49 49 H 1.08996 * 110.40998 * 142.63975 * 27 26 25 50 50 H 1.09005 * 110.40911 * 265.07224 * 27 26 25 51 51 H 1.09002 * 109.46839 * 60.00329 * 29 28 23 52 52 H 1.09000 * 109.47177 * 179.97438 * 29 28 23 53 53 H 1.08997 * 109.47825 * 299.99821 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4413 1.4407 0.3657 5 6 3.5855 1.2453 1.8529 6 8 2.6017 1.0652 2.5392 7 7 4.8077 1.2706 2.4206 8 6 4.9388 1.0923 3.7736 9 1 4.0628 0.9319 4.3846 10 6 6.1989 1.1178 4.3588 11 7 7.2647 1.3134 3.6153 12 14 6.3776 0.8756 6.2023 13 1 6.5427 -0.5704 6.4978 14 1 7.5687 1.6188 6.6861 15 1 5.1635 1.3856 6.8886 16 6 1.7850 2.0263 -1.3006 17 1 0.7474 1.8752 -1.5984 18 6 2.7117 1.4073 -2.3490 19 6 2.0705 3.5252 -1.1890 20 7 1.2655 4.0964 -0.1064 21 6 1.2805 5.4257 0.1154 22 8 1.9602 6.1492 -0.5815 23 6 0.4529 6.0131 1.2294 24 1 0.5006 5.3772 2.1134 25 6 -1.0113 6.1940 0.7746 26 6 -1.4730 7.5142 1.4255 27 6 -0.2491 8.0195 2.2193 28 7 0.9194 7.3860 1.5530 29 6 2.0830 7.3490 2.4489 30 1 -0.3633 0.4213 -0.9374 31 1 -0.3633 -1.0224 0.1038 32 1 -0.3634 0.6011 0.8334 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.9824 0.6530 -0.1585 36 1 3.8507 2.4113 0.0854 37 1 5.5944 1.4150 1.8719 38 1 8.1443 1.3316 4.0239 39 1 2.5084 0.3394 -2.4285 40 1 2.5380 1.8834 -3.3139 41 1 3.7493 1.5585 -2.0512 42 1 3.1282 3.6787 -0.9752 43 1 1.8150 4.0147 -2.1288 44 1 0.7217 3.5178 0.4508 45 1 -1.0639 6.2688 -0.3115 46 1 -1.6224 5.3628 1.1262 47 1 -1.7522 8.2369 0.6589 48 1 -2.3110 7.3318 2.0981 49 1 -0.1788 9.1055 2.1588 50 1 -0.3120 7.6992 3.2593 51 1 2.8967 6.8082 1.9655 52 1 2.4043 8.3670 2.6693 53 1 1.8119 6.8444 3.3762 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152386659.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:00 Heat of formation + Delta-G solvation = -82.932044 kcal Electronic energy + Delta-G solvation = -31605.756800 eV Core-core repulsion = 27511.491090 eV Total energy + Delta-G solvation = -4094.265711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.28445 -40.55565 -39.21922 -38.53497 -35.93710 -35.39770 -33.28438 -33.22506 -32.73234 -31.37357 -30.46021 -27.94393 -27.27536 -26.61867 -25.99317 -23.79276 -22.99811 -21.89210 -21.64156 -20.92607 -20.27346 -19.65542 -18.36205 -18.10709 -17.41862 -16.93544 -16.76940 -16.42978 -16.31584 -15.86486 -15.75825 -15.48465 -15.30753 -15.26327 -14.96437 -14.76796 -14.34515 -14.18867 -13.93076 -13.72325 -13.61897 -13.46815 -13.35895 -13.05621 -12.98646 -12.91047 -12.85453 -12.60110 -12.41582 -12.39046 -12.35371 -12.30001 -12.13502 -12.07090 -11.86316 -11.54546 -11.50703 -11.38195 -10.75481 -10.27583 -9.98176 -9.96568 -9.53112 -9.15647 -8.45248 -5.93460 1.36783 1.39876 1.52410 1.65981 2.09699 2.15555 2.28195 2.74308 3.09729 3.21814 3.42285 3.60202 3.62616 3.77044 3.95413 4.01108 4.11231 4.16919 4.24624 4.25382 4.32337 4.35024 4.41510 4.43154 4.52974 4.56478 4.58382 4.63213 4.70142 4.71956 4.80090 4.85233 4.87309 4.88140 4.89390 4.99246 5.09992 5.16797 5.23146 5.23756 5.27432 5.41248 5.46664 5.53471 5.72022 5.92084 5.92280 6.11780 6.24563 6.62448 6.66886 7.15137 7.33920 7.59816 8.15513 8.72444 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.003778 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.179359 B = 7408.977564 C = 9569.151746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 N -0.517 5.517 4 C 0.058 3.942 5 C 0.446 3.554 6 O -0.606 6.606 7 N -0.581 5.581 8 C -0.327 4.327 9 H 0.080 0.920 10 C -0.015 4.015 11 N -0.924 5.924 12 Si 0.990 3.010 13 H -0.270 1.270 14 H -0.273 1.273 15 H -0.272 1.272 16 C 0.074 3.926 17 H 0.114 0.886 18 C -0.182 4.182 19 C 0.130 3.870 20 N -0.708 5.708 21 C 0.517 3.483 22 O -0.571 6.571 23 C 0.038 3.962 24 H 0.072 0.928 25 C -0.105 4.105 26 C -0.116 4.116 27 C 0.028 3.972 28 N -0.512 5.512 29 C 0.018 3.982 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.392 0.608 38 H 0.276 0.724 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.413 0.587 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.053 0.947 51 H 0.042 0.958 52 H 0.085 0.915 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.203 5.564 -10.100 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 N -0.241 5.241 4 C -0.074 4.074 5 C 0.233 3.767 6 O -0.491 6.491 7 N -0.218 5.218 8 C -0.457 4.457 9 H 0.098 0.902 10 C -0.214 4.214 11 N -0.565 5.565 12 Si 0.814 3.186 13 H -0.196 1.196 14 H -0.198 1.198 15 H -0.197 1.197 16 C -0.035 4.035 17 H 0.132 0.868 18 C -0.241 4.241 19 C 0.006 3.994 20 N -0.359 5.359 21 C 0.303 3.697 22 O -0.450 6.450 23 C -0.074 4.074 24 H 0.090 0.910 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.099 4.099 28 N -0.237 5.237 29 C -0.131 4.131 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.225 0.775 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.250 0.750 45 H 0.088 0.912 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.114 0.886 49 H 0.111 0.889 50 H 0.071 0.929 51 H 0.061 0.939 52 H 0.104 0.896 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.267 6.513 -10.206 20.278 hybrid contribution 1.432 -1.248 1.218 2.256 sum -14.835 5.265 -8.988 18.127 Atomic orbital electron populations 1.21665 0.93314 1.01949 1.02208 1.22073 0.97371 0.87846 1.00007 1.61700 1.15010 1.18754 1.28670 1.21679 0.91280 1.02574 0.91845 1.20774 0.82957 0.82045 0.90937 1.90472 1.38408 1.54895 1.65363 1.41969 1.07419 1.64356 1.08094 1.19632 0.93887 1.47877 0.84310 0.90218 1.26010 0.94249 0.96688 1.04474 1.69686 0.98916 1.50112 1.37826 0.84968 0.77858 0.78573 0.77201 1.19581 1.19837 1.19702 1.22075 1.02017 0.91630 0.87743 0.86829 1.22384 0.99742 1.02045 0.99954 1.21430 0.94622 0.92907 0.90481 1.45837 1.47977 1.06796 1.35331 1.20674 0.81653 0.82182 0.85172 1.90649 1.43486 1.60892 1.49962 1.22709 0.96487 0.91886 0.96271 0.90989 1.22248 0.90781 0.99886 1.01451 1.22303 0.97188 0.96063 0.99837 1.23304 0.89352 1.00684 0.96583 1.65108 1.05449 1.13130 1.39996 1.22455 0.93497 1.02815 0.94289 0.91058 0.91721 0.93208 0.93192 0.93683 0.91505 0.89001 0.77495 0.91498 0.91048 0.89882 0.92817 0.93802 0.90167 0.75034 0.91213 0.88294 0.90207 0.88623 0.88894 0.92888 0.93940 0.89591 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.85 71.98 0.71 -2.13 16 2 C 0.05 1.44 5.16 86.30 0.44 1.89 16 3 N -0.52 -14.36 3.36 -875.52 -2.94 -17.30 16 4 C 0.06 1.94 4.05 85.55 0.35 2.29 16 5 C 0.45 20.79 7.40 87.65 0.65 21.44 16 6 O -0.61 -31.95 14.89 -3.08 -0.05 -32.00 16 7 N -0.58 -29.98 5.29 -306.98 -1.62 -31.61 16 8 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 9 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 10 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 11 N -0.92 -50.81 13.05 21.67 0.28 -50.53 16 12 Si 0.99 43.36 29.55 68.60 2.03 45.38 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 C 0.07 1.51 2.39 44.92 0.11 1.62 16 17 H 0.11 1.90 6.48 -2.39 -0.02 1.89 16 18 C -0.18 -3.17 8.54 71.98 0.61 -2.56 16 19 C 0.13 3.20 4.91 86.38 0.42 3.63 16 20 N -0.71 -18.93 5.41 -463.06 -2.51 -21.44 16 21 C 0.52 15.93 6.71 87.66 0.59 16.52 16 22 O -0.57 -22.01 16.58 -3.06 -0.05 -22.06 16 23 C 0.04 0.99 2.68 44.32 0.12 1.11 16 24 H 0.07 1.89 7.97 -2.39 -0.02 1.87 16 25 C -0.11 -1.92 6.54 31.49 0.21 -1.72 16 26 C -0.12 -1.75 7.00 31.49 0.22 -1.53 16 27 C 0.03 0.53 6.50 86.43 0.56 1.09 16 28 N -0.51 -13.72 4.93 -886.66 -4.37 -18.10 16 29 C 0.02 0.50 9.45 127.69 1.21 1.71 16 30 H 0.07 1.15 6.80 -2.39 -0.02 1.13 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.11 6.26 -2.39 -0.01 1.10 16 34 H 0.04 1.57 6.75 -2.38 -0.02 1.56 16 35 H 0.07 2.06 7.34 -2.39 -0.02 2.04 16 36 H 0.09 3.05 5.93 -2.38 -0.01 3.04 16 37 H 0.39 19.67 7.90 -92.71 -0.73 18.94 16 38 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.07 1.16 6.50 -2.39 -0.02 1.15 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.06 6.76 -2.38 -0.02 1.05 16 42 H 0.04 1.28 6.44 -2.39 -0.02 1.26 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.41 10.56 8.07 -92.71 -0.75 9.81 16 45 H 0.07 1.36 7.85 -2.39 -0.02 1.35 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.05 0.93 7.91 -2.38 -0.02 0.92 16 51 H 0.04 1.40 7.96 -2.39 -0.02 1.38 16 52 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 53 H 0.03 0.89 7.98 -2.39 -0.02 0.87 16 Total: -1.00 -72.73 414.37 -2.31 -75.05 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -0.56 Total: 47.40 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 7.48 Total: 25.21 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -11.16 Total: -138.98 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -0.10 Total: -54.06 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -72.73 -2.31 -75.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152386659.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.885 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds