Wall clock time and date at job start Sat Apr 11 2020 06:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47629 * 2 1 4 4 C 1.46905 * 110.99791 * 291.73518 * 3 2 1 5 5 C 1.50695 * 109.47099 * 289.06041 * 4 3 2 6 6 O 1.21291 * 120.00297 * 354.56159 * 5 4 3 7 7 N 1.34776 * 119.99831 * 174.55794 * 5 4 3 8 8 C 1.37095 * 120.00159 * 180.02562 * 7 5 4 9 9 H 1.08004 * 119.99900 * 0.02562 * 8 7 5 10 10 C 1.38950 * 120.00504 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99711 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00216 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47089 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46851 * 120.00365 * 12 10 8 15 15 H 1.48500 * 109.47088 * 240.00302 * 12 10 8 16 16 C 1.46901 * 110.99549 * 55.68593 * 3 2 1 17 17 H 1.08996 * 109.47271 * 291.58848 * 16 3 2 18 18 C 1.53006 * 109.46965 * 171.59154 * 16 3 2 19 19 C 1.52998 * 109.47180 * 51.59663 * 16 3 2 20 20 N 1.46497 * 109.47673 * 55.91901 * 19 16 3 21 21 C 1.34774 * 120.00202 * 174.87767 * 20 19 16 22 22 O 1.21271 * 120.00094 * 0.27488 * 21 20 19 23 23 C 1.50703 * 119.99631 * 180.27466 * 21 20 19 24 24 H 1.08998 * 110.64854 * 300.70036 * 23 21 20 25 25 C 1.54599 * 110.71941 * 177.54934 * 23 21 20 26 26 C 1.53994 * 105.13820 * 219.68426 * 25 23 21 27 27 N 1.47896 * 107.05735 * 358.77576 * 26 25 23 28 28 C 1.46901 * 110.99962 * 145.84497 * 27 26 25 29 29 C 1.48731 * 105.94714 * 25.20474 * 27 26 25 30 30 H 1.08993 * 109.47680 * 182.19075 * 1 2 3 31 31 H 1.09004 * 109.47162 * 302.19301 * 1 2 3 32 32 H 1.09009 * 109.47553 * 62.18733 * 1 2 3 33 33 H 1.09000 * 109.46887 * 239.99934 * 2 1 3 34 34 H 1.08999 * 109.47230 * 120.00388 * 2 1 3 35 35 H 1.09002 * 109.46866 * 49.06592 * 4 3 2 36 36 H 1.09003 * 109.46623 * 169.05894 * 4 3 2 37 37 H 0.97003 * 119.99843 * 0.02562 * 7 5 4 38 38 H 0.96996 * 120.00055 * 180.02562 * 11 10 8 39 39 H 1.09005 * 109.46932 * 300.00191 * 18 16 3 40 40 H 1.09003 * 109.46672 * 59.99995 * 18 16 3 41 41 H 1.08992 * 109.47187 * 179.97438 * 18 16 3 42 42 H 1.09005 * 109.46432 * 295.91619 * 19 16 3 43 43 H 1.09004 * 109.47094 * 175.92154 * 19 16 3 44 44 H 0.97001 * 119.99326 * 355.14950 * 20 19 16 45 45 H 1.08997 * 110.31229 * 338.60287 * 25 23 21 46 46 H 1.09000 * 110.30923 * 100.77369 * 25 23 21 47 47 H 1.09001 * 109.91376 * 118.12929 * 26 25 23 48 48 H 1.08999 * 109.91604 * 239.22319 * 26 25 23 49 49 H 1.08998 * 109.47329 * 60.12486 * 28 27 26 50 50 H 1.09004 * 109.47387 * 180.12999 * 28 27 26 51 51 H 1.09007 * 109.47208 * 300.12529 * 28 27 26 52 52 H 1.09005 * 110.83843 * 202.57590 * 29 27 26 53 53 H 1.08993 * 110.58590 * 79.37814 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7164 2.0506 -1.2740 5 6 2.5863 1.4744 -2.3613 6 8 3.4483 0.6672 -2.0846 7 7 2.4063 1.8560 -3.6413 8 6 3.1973 1.3315 -4.6307 9 1 3.9643 0.6122 -4.3844 10 6 3.0115 1.7244 -5.9505 11 7 2.0778 2.5993 -6.2502 12 14 4.0897 1.0102 -7.2983 13 1 5.0579 0.0542 -6.7033 14 1 3.2398 0.3015 -8.2886 15 1 4.8282 2.1068 -7.9746 16 6 1.4663 2.1389 1.1328 17 1 0.3957 2.2812 0.9862 18 6 2.1544 3.5026 1.2226 19 6 1.7049 1.3611 2.4285 20 7 3.1360 1.0852 2.5762 21 6 3.5970 0.4985 3.6985 22 8 2.8264 0.1944 4.5842 23 6 5.0701 0.2205 3.8529 24 1 5.4235 -0.4330 3.0554 25 6 5.3678 -0.3971 5.2386 26 6 6.6838 0.2585 5.6967 27 7 7.1149 1.1689 4.6138 28 6 7.7827 2.3578 5.1601 29 6 5.8780 1.5424 3.8772 30 1 -0.3634 -1.0268 0.0393 31 1 -0.3634 0.5475 0.8697 32 1 -0.3634 0.4795 -0.9090 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.6677 1.8928 -1.5257 36 1 1.9109 3.1191 -1.1809 37 1 1.7171 2.5018 -3.8626 38 1 1.9478 2.8733 -7.1716 39 1 3.2252 3.3603 1.3692 40 1 1.9845 4.0568 0.2995 41 1 1.7435 4.0622 2.0628 42 1 1.1552 0.4204 2.3939 43 1 1.3595 1.9527 3.2763 44 1 3.7524 1.3285 1.8677 45 1 4.5650 -0.1629 5.9376 46 1 5.4929 -1.4765 5.1527 47 1 6.5172 0.8245 6.6133 48 1 7.4409 -0.5071 5.8657 49 1 8.6615 2.0522 5.7279 50 1 8.0875 3.0113 4.3426 51 1 7.0947 2.8922 5.8152 52 1 6.1134 1.8680 2.8639 53 1 5.3314 2.3174 4.4143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156883723.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:07 Heat of formation + Delta-G solvation = -82.283534 kcal Electronic energy + Delta-G solvation = -31026.252374 eV Core-core repulsion = 26932.014785 eV Total energy + Delta-G solvation = -4094.237589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39269 -40.57870 -39.33283 -38.65254 -35.96201 -35.40903 -33.37333 -33.22715 -32.69816 -31.20275 -30.02010 -28.12025 -27.49981 -26.63121 -25.82337 -24.00573 -23.17400 -22.00521 -21.25863 -20.82165 -20.23912 -19.63157 -18.45388 -17.86313 -17.38535 -17.23054 -16.73825 -16.53495 -16.45763 -15.99124 -15.77509 -15.57764 -15.25416 -15.10585 -14.98170 -14.53310 -14.49620 -14.22938 -13.93005 -13.82285 -13.64649 -13.53244 -13.40883 -13.08278 -12.99776 -12.72247 -12.56547 -12.50892 -12.50030 -12.42232 -12.36686 -12.31677 -12.19059 -12.10730 -11.70327 -11.66279 -11.59114 -11.38035 -10.90433 -10.23430 -10.00403 -9.94680 -9.45484 -9.13730 -8.43034 -5.90498 1.37846 1.43040 1.56558 1.61076 2.13240 2.21292 2.30878 2.75753 3.06315 3.24569 3.47397 3.49851 3.61914 3.73034 3.91931 4.02587 4.09975 4.19288 4.27349 4.30524 4.31576 4.35923 4.40972 4.50001 4.51314 4.52763 4.53446 4.60653 4.67227 4.68793 4.77245 4.84924 4.88605 4.93389 5.01124 5.02341 5.05899 5.07173 5.10669 5.18200 5.31417 5.39278 5.44992 5.50659 5.81035 5.92542 6.00264 6.12327 6.23870 6.59494 6.66071 7.18697 7.24679 7.63668 8.19849 8.74734 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.002550 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.724808 B =10976.293499 C =12206.329276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 N -0.516 5.516 4 C 0.052 3.948 5 C 0.446 3.554 6 O -0.611 6.611 7 N -0.579 5.579 8 C -0.325 4.325 9 H 0.078 0.922 10 C -0.015 4.015 11 N -0.923 5.923 12 Si 0.988 3.012 13 H -0.273 1.273 14 H -0.274 1.274 15 H -0.272 1.272 16 C 0.068 3.932 17 H 0.074 0.926 18 C -0.145 4.145 19 C 0.129 3.871 20 N -0.704 5.704 21 C 0.521 3.479 22 O -0.583 6.583 23 C -0.113 4.113 24 H 0.113 0.887 25 C -0.115 4.115 26 C 0.038 3.962 27 N -0.534 5.534 28 C 0.015 3.985 29 C 0.053 3.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.394 0.606 38 H 0.276 0.724 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.414 0.586 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.031 0.969 52 H 0.095 0.905 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.466 2.159 21.191 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.074 4.074 3 N -0.240 5.240 4 C -0.079 4.079 5 C 0.234 3.766 6 O -0.496 6.496 7 N -0.217 5.217 8 C -0.455 4.455 9 H 0.096 0.904 10 C -0.214 4.214 11 N -0.564 5.564 12 Si 0.813 3.187 13 H -0.198 1.198 14 H -0.199 1.199 15 H -0.197 1.197 16 C -0.040 4.040 17 H 0.092 0.908 18 C -0.202 4.202 19 C 0.005 3.995 20 N -0.356 5.356 21 C 0.308 3.692 22 O -0.463 6.463 23 C -0.135 4.135 24 H 0.131 0.869 25 C -0.153 4.153 26 C -0.090 4.090 27 N -0.259 5.259 28 C -0.134 4.134 29 C -0.075 4.075 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.228 0.772 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.252 0.748 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.049 0.951 52 H 0.113 0.887 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.336 1.248 21.532 21.695 hybrid contribution -1.133 0.421 -1.085 1.624 sum 1.204 1.670 20.447 20.550 Atomic orbital electron populations 1.22408 0.96954 1.03002 1.02139 1.22060 0.93408 0.89904 1.01986 1.61782 1.59430 1.01871 1.00933 1.21814 0.97304 1.00125 0.88654 1.20777 0.87127 0.85044 0.83691 1.90489 1.38099 1.38156 1.82836 1.41957 1.33498 1.40610 1.05678 1.19643 1.14964 1.23576 0.87277 0.90400 1.25969 0.98542 0.96960 0.99928 1.69675 1.33293 1.32616 1.20861 0.84932 0.78004 0.78144 0.77654 1.19793 1.19900 1.19742 1.21999 0.98831 0.94175 0.88950 0.90798 1.21895 1.01209 0.94448 1.02670 1.21440 0.81797 0.99622 0.96671 1.45941 1.09673 1.60613 1.19348 1.20647 0.90811 0.76386 0.81363 1.90647 1.59361 1.54049 1.42281 1.22220 0.90579 0.99536 1.01168 0.86900 1.22314 0.97253 1.01067 0.94686 1.22920 0.96340 0.96593 0.93119 1.64756 1.22397 1.15541 1.23160 1.22576 0.99196 0.91723 0.99880 1.23170 0.89592 0.94317 1.00471 0.91640 0.90712 0.93120 0.93168 0.90583 0.91511 0.86926 0.77229 0.91505 0.92292 0.92040 0.90246 0.92056 0.90259 0.74834 0.90968 0.89981 0.93075 0.89153 0.90189 0.90693 0.95078 0.88671 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.36 9.00 71.98 0.65 -3.71 16 2 C 0.05 1.58 5.19 86.30 0.45 2.02 16 3 N -0.52 -14.17 3.61 -875.52 -3.16 -17.34 16 4 C 0.05 1.63 5.22 85.55 0.45 2.08 16 5 C 0.45 20.08 7.32 87.66 0.64 20.72 16 6 O -0.61 -31.97 14.65 -3.06 -0.04 -32.02 16 7 N -0.58 -28.79 5.29 -306.99 -1.62 -30.41 16 8 C -0.32 -18.08 9.68 84.04 0.81 -17.26 16 9 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 10 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 11 N -0.92 -49.31 13.05 21.66 0.28 -49.03 16 12 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 15 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 16 C 0.07 1.36 1.68 44.92 0.08 1.44 16 17 H 0.07 1.30 6.69 -2.39 -0.02 1.29 16 18 C -0.14 -2.56 8.99 71.98 0.65 -1.92 16 19 C 0.13 2.64 4.41 86.38 0.38 3.02 16 20 N -0.70 -15.40 4.87 -463.07 -2.25 -17.65 16 21 C 0.52 12.57 7.14 87.66 0.63 13.19 16 22 O -0.58 -17.73 15.45 -3.00 -0.05 -17.77 16 23 C -0.11 -2.29 3.44 -10.33 -0.04 -2.32 16 24 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 25 C -0.11 -2.18 6.32 31.47 0.20 -1.98 16 26 C 0.04 0.62 6.70 86.45 0.58 1.20 16 27 N -0.53 -9.56 5.55 -908.60 -5.04 -14.60 16 28 C 0.01 0.20 9.40 127.69 1.20 1.41 16 29 C 0.05 0.96 6.00 86.61 0.52 1.48 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.44 5.75 -2.39 -0.01 1.42 16 32 H 0.05 1.26 6.52 -2.38 -0.02 1.25 16 33 H 0.05 1.89 6.44 -2.39 -0.02 1.88 16 34 H 0.08 2.13 6.41 -2.39 -0.02 2.11 16 35 H 0.07 1.93 6.21 -2.39 -0.01 1.91 16 36 H 0.11 3.09 5.87 -2.39 -0.01 3.08 16 37 H 0.39 18.71 7.90 -92.71 -0.73 17.98 16 38 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.06 1.13 7.23 -2.38 -0.02 1.11 16 40 H 0.06 1.12 6.24 -2.39 -0.01 1.11 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.37 5.93 -2.38 -0.01 1.36 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.41 9.25 7.38 -92.71 -0.68 8.57 16 45 H 0.07 1.60 6.88 -2.39 -0.02 1.58 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 0.77 7.73 -2.39 -0.02 0.75 16 48 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.03 0.42 8.01 -2.38 -0.02 0.40 16 52 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 53 H 0.05 0.88 7.87 -2.39 -0.02 0.86 16 Total: -1.00 -67.93 407.14 -2.69 -70.62 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -0.49 Total: 44.44 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 7.66 Total: 19.05 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -11.80 Total: -129.03 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -0.09 Total: -49.79 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -67.93 -2.69 -70.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156883723.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.663 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds