Wall clock time and date at job start Sat Apr 11 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47442 * 111.00104 * 2 1 4 4 C 1.54316 * 107.23859 * 123.25444 * 3 2 1 5 5 C 1.55266 * 103.08438 * 22.20578 * 4 3 2 6 6 C 1.47850 * 110.99863 * 120.83835 * 2 1 3 7 7 H 1.09000 * 110.37405 * 332.57379 * 6 2 1 8 8 C 1.52998 * 110.37449 * 94.80690 * 6 2 1 9 9 C 1.53000 * 109.47195 * 294.83573 * 8 6 2 10 10 C 1.50694 * 109.47126 * 185.53275 * 9 8 6 11 11 O 1.21284 * 120.00208 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00358 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00275 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46914 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46813 * 179.97438 * 14 13 12 16 16 N 1.46900 * 109.46978 * 180.02562 * 15 14 13 17 17 C 1.46899 * 110.99994 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47043 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00110 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00115 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00119 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00246 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99915 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00130 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99906 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.46915 * 60.00162 * 25 23 21 27 27 H 1.48496 * 109.46822 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47052 * 300.00175 * 25 23 21 29 29 H 1.09003 * 109.47001 * 305.37539 * 1 2 3 30 30 H 1.08999 * 109.47120 * 65.37737 * 1 2 3 31 31 H 1.09004 * 109.46856 * 185.38049 * 1 2 3 32 32 H 1.09001 * 109.88396 * 242.66548 * 3 2 1 33 33 H 1.08998 * 109.88812 * 3.68412 * 3 2 1 34 34 H 1.09002 * 110.70373 * 140.66293 * 4 3 2 35 35 H 1.08994 * 110.70740 * 263.72742 * 4 3 2 36 36 H 1.09001 * 111.08895 * 206.38519 * 5 4 3 37 37 H 1.09001 * 110.94400 * 82.52957 * 5 4 3 38 38 H 1.09001 * 109.47175 * 174.82982 * 8 6 2 39 39 H 1.09005 * 109.46830 * 54.83379 * 8 6 2 40 40 H 1.08995 * 109.47135 * 65.53202 * 9 8 6 41 41 H 1.08997 * 109.46635 * 305.53144 * 9 8 6 42 42 H 0.96997 * 119.99730 * 359.97438 * 12 10 9 43 43 H 1.09004 * 109.47393 * 59.99585 * 13 12 10 44 44 H 1.08997 * 109.47257 * 299.99253 * 13 12 10 45 45 H 1.08996 * 109.47445 * 299.99707 * 14 13 12 46 46 H 1.08995 * 109.46923 * 60.00085 * 14 13 12 47 47 H 1.09006 * 109.46901 * 300.00116 * 15 14 13 48 48 H 1.08995 * 109.47205 * 60.00382 * 15 14 13 49 49 H 1.00900 * 111.00343 * 56.04433 * 16 15 14 50 50 H 1.08996 * 109.47006 * 299.99200 * 17 16 15 51 51 H 1.09000 * 109.47135 * 59.99795 * 17 16 15 52 52 H 0.97004 * 120.00125 * 0.02562 * 20 18 17 53 53 H 0.96999 * 120.00177 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5138 1.2325 5 6 3.3044 0.0438 1.5468 6 6 1.9988 -0.7076 1.1852 7 1 1.2881 -0.6517 2.0097 8 6 2.3019 -2.1676 0.8425 9 6 0.9981 -2.8935 0.5050 10 6 1.2781 -4.3600 0.3004 11 8 2.4092 -4.7829 0.4129 12 7 0.2717 -5.2015 -0.0088 13 6 0.5438 -6.6273 -0.2071 14 6 -0.7600 -7.3531 -0.5448 15 6 -0.4757 -8.8421 -0.7526 16 7 -1.7274 -9.5390 -1.0774 17 6 -1.4926 -10.9744 -1.2835 18 6 -2.7964 -11.6543 -1.6134 19 8 -3.8206 -11.0070 -1.6706 20 7 -2.8245 -12.9817 -1.8448 21 6 -4.0108 -13.6004 -2.1444 22 1 -4.9227 -13.0241 -2.1953 23 6 -4.0396 -14.9689 -2.3835 24 7 -2.9299 -15.6703 -2.3220 25 14 -5.6557 -15.8118 -2.7924 26 1 -6.2237 -15.2193 -4.0299 27 1 -5.4182 -17.2627 -3.0013 28 1 -6.6100 -15.6234 -1.6702 29 1 -0.3633 0.5950 0.8380 30 1 -0.3633 0.4282 -0.9342 31 1 -0.3633 -1.0232 0.0964 32 1 2.5697 1.5539 -0.9106 33 1 1.1754 2.0892 0.0659 34 1 3.8000 2.1034 0.9904 35 1 2.3752 1.9576 2.0684 36 1 3.5470 -0.0807 2.6021 37 1 4.1310 -0.2841 0.9164 38 1 2.7760 -2.6505 1.6970 39 1 2.9727 -2.2076 -0.0157 40 1 0.5742 -2.4738 -0.4073 41 1 0.2906 -2.7696 1.3248 42 1 -0.6329 -4.8633 -0.0992 43 1 0.9670 -7.0468 0.7056 44 1 1.2518 -6.7515 -1.0264 45 1 -1.4678 -7.2290 0.2748 46 1 -1.1835 -6.9337 -1.4573 47 1 0.2320 -8.9659 -1.5724 48 1 -0.0520 -9.2619 0.1597 49 1 -2.1728 -9.1258 -1.8830 50 1 -0.7917 -11.1133 -2.1066 51 1 -1.0765 -11.4087 -0.3745 52 1 -2.0056 -13.4996 -1.7987 53 1 -2.9501 -16.6256 -2.4885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160268072.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:16 Heat of formation + Delta-G solvation = -111.426839 kcal Electronic energy + Delta-G solvation = -28002.301541 eV Core-core repulsion = 23906.800203 eV Total energy + Delta-G solvation = -4095.501338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90257 -40.15984 -39.93243 -37.65210 -36.11003 -35.61511 -34.33221 -33.28896 -32.98969 -32.36005 -29.59032 -28.39777 -26.74335 -26.40434 -24.93297 -23.70350 -22.57111 -22.06708 -21.25155 -21.00914 -20.76495 -19.89791 -18.08933 -17.82109 -17.40795 -17.22368 -16.90954 -16.63972 -16.43651 -16.24696 -15.93775 -15.77692 -15.17807 -15.06478 -14.96527 -14.74209 -14.46135 -14.29548 -14.04729 -13.78600 -13.55436 -13.43922 -13.35102 -13.20596 -13.09965 -12.84601 -12.68223 -12.43730 -12.42603 -12.39224 -12.11971 -12.11652 -12.03810 -11.84120 -11.74585 -11.65193 -11.49704 -11.46429 -10.81849 -10.35129 -10.07138 -10.01724 -9.33682 -9.24511 -8.46337 -5.95484 1.40500 1.42448 1.53493 1.68423 2.05163 2.19987 2.30876 2.95642 3.04486 3.20992 3.52909 3.65961 3.71252 3.87668 4.01216 4.08276 4.13772 4.16400 4.19349 4.24953 4.34148 4.43390 4.48579 4.51595 4.56389 4.57664 4.58804 4.60538 4.63231 4.71177 4.76571 4.82924 4.92246 4.96398 5.01432 5.08551 5.11033 5.17052 5.18600 5.22851 5.34025 5.38984 5.40861 5.49824 5.88375 6.06702 6.09624 6.19297 6.41163 6.59227 6.60074 7.12381 7.29700 7.56101 8.11131 8.70840 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.040742 B = 0.001162 C = 0.001137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.090080 B =24091.295949 C =24628.631024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.545 5.545 3 C 0.039 3.961 4 C -0.138 4.138 5 C -0.128 4.128 6 C 0.073 3.927 7 H 0.064 0.936 8 C -0.081 4.081 9 C -0.131 4.131 10 C 0.506 3.494 11 O -0.590 6.590 12 N -0.721 5.721 13 C 0.126 3.874 14 C -0.114 4.114 15 C 0.062 3.938 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.623 6.623 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.080 0.920 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.416 0.584 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.040 0.960 48 H 0.078 0.922 49 H 0.345 0.655 50 H 0.066 0.934 51 H 0.103 0.897 52 H 0.396 0.604 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.961 33.355 7.147 36.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.270 5.270 3 C -0.089 4.089 4 C -0.177 4.177 5 C -0.166 4.166 6 C -0.035 4.035 7 H 0.082 0.918 8 C -0.120 4.120 9 C -0.170 4.170 10 C 0.295 3.705 11 O -0.470 6.470 12 N -0.374 5.374 13 C 0.001 3.999 14 C -0.152 4.152 15 C -0.067 4.067 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.467 4.467 22 H 0.098 0.902 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.253 0.747 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.096 0.904 49 H 0.164 0.836 50 H 0.084 0.916 51 H 0.121 0.879 52 H 0.230 0.770 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.077 32.930 7.352 35.837 hybrid contribution -0.500 -0.530 -0.484 0.875 sum 11.576 32.400 6.868 35.085 Atomic orbital electron populations 1.22773 0.86919 1.02929 1.01224 1.63459 1.08695 1.14481 1.40381 1.22854 0.98269 0.89070 0.98701 1.22776 1.00189 0.96815 0.97890 1.22776 0.96993 0.94774 1.02054 1.22621 0.96297 0.93394 0.91209 0.91775 1.21188 0.96107 0.93153 1.01538 1.21803 1.00774 0.88993 1.05472 1.21378 0.84233 0.89940 0.74994 1.90691 1.23824 1.79629 1.52868 1.45986 1.11903 1.08250 1.71245 1.21157 0.97256 0.80393 1.01065 1.21580 0.96588 0.93648 1.03419 1.21914 0.89913 0.93730 1.01145 1.60048 1.25022 1.01031 1.45431 1.21535 0.93191 0.89770 1.02348 1.20885 0.91718 0.82557 0.82437 1.90482 1.37017 1.65289 1.58196 1.41932 1.10294 1.06951 1.61790 1.19663 0.88429 0.92013 1.46562 0.90232 1.26042 1.02097 0.96414 0.96573 1.69668 1.28360 1.08715 1.49397 0.84989 0.77339 0.77156 0.78864 1.19604 1.19496 1.19694 0.95099 0.91158 0.89974 0.91005 0.92055 0.90044 0.90954 0.89946 0.91291 0.91898 0.92666 0.86883 0.86961 0.74742 0.92189 0.92339 0.90200 0.90439 0.94190 0.90373 0.83591 0.91570 0.87864 0.76973 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 8.77 127.69 1.12 1.20 16 2 N -0.55 -6.13 4.94 -886.63 -4.38 -10.51 16 3 C 0.04 0.37 6.89 86.65 0.60 0.97 16 4 C -0.14 -1.10 6.94 31.82 0.22 -0.88 16 5 C -0.13 -1.28 6.51 32.03 0.21 -1.07 16 6 C 0.07 0.79 2.58 45.39 0.12 0.91 16 7 H 0.06 0.60 7.81 -2.39 -0.02 0.58 16 8 C -0.08 -1.15 4.30 30.59 0.13 -1.02 16 9 C -0.13 -1.49 4.35 29.85 0.13 -1.37 16 10 C 0.51 9.43 7.83 87.65 0.69 10.11 16 11 O -0.59 -16.56 15.91 -3.04 -0.05 -16.60 16 12 N -0.72 -10.64 5.56 -463.07 -2.57 -13.22 16 13 C 0.13 2.20 5.67 86.38 0.49 2.69 16 14 C -0.11 -1.94 5.59 30.60 0.17 -1.77 16 15 C 0.06 1.34 5.69 86.31 0.49 1.84 16 16 N -0.68 -20.70 6.12 -517.92 -3.17 -23.87 16 17 C 0.06 2.17 6.17 85.56 0.53 2.70 16 18 C 0.44 20.78 7.82 87.66 0.69 21.46 16 19 O -0.62 -34.44 15.78 -3.07 -0.05 -34.49 16 20 N -0.57 -29.47 5.29 -306.98 -1.62 -31.10 16 21 C -0.34 -19.21 9.68 84.04 0.81 -18.39 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 25 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 29 H 0.03 0.22 8.09 -2.39 -0.02 0.20 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.49 5.28 -2.39 -0.01 0.48 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.49 7.56 -2.39 -0.02 0.47 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.82 8.06 -2.39 -0.02 0.81 16 38 H 0.06 1.03 7.94 -2.39 -0.02 1.01 16 39 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.11 1.06 6.40 -2.39 -0.02 1.04 16 41 H 0.11 0.76 8.06 -2.39 -0.02 0.74 16 42 H 0.42 3.67 8.47 -92.71 -0.79 2.88 16 43 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.35 10.83 8.43 -89.69 -0.76 10.08 16 50 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 52 H 0.40 19.38 7.90 -92.71 -0.73 18.64 16 53 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -73.74 425.26 -4.03 -77.77 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -1.36 Total: 39.43 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.86 Total: 17.23 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -11.46 Total: -128.18 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.10 Total: -51.09 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -73.74 -4.03 -77.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160268072.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.652 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds