Wall clock time and date at job start Sat Apr 11 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47391 * 2 1 4 4 C 1.34771 * 120.00472 * 179.97438 * 3 2 1 5 5 O 1.21598 * 119.99656 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00349 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99892 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47343 * 59.99733 * 7 6 4 9 9 C 1.52996 * 109.46852 * 299.99336 * 7 6 4 10 10 C 1.50699 * 109.46647 * 179.97438 * 7 6 4 11 11 O 1.21289 * 119.99678 * 144.99749 * 10 7 6 12 12 N 1.34776 * 120.00337 * 324.99613 * 10 7 6 13 13 C 1.46498 * 120.00157 * 180.27543 * 12 10 7 14 14 C 1.52999 * 109.47509 * 179.72816 * 13 12 10 15 15 C 1.52993 * 109.47306 * 175.02387 * 14 13 12 16 16 C 1.52994 * 115.55361 * 278.02797 * 15 14 13 17 17 N 1.46498 * 109.47311 * 303.90426 * 16 15 14 18 18 C 1.36932 * 120.00133 * 175.58918 * 17 16 15 19 19 H 1.08002 * 120.00228 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00374 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99461 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00518 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46908 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47031 * 119.99759 * 22 20 18 25 25 H 1.48502 * 109.47021 * 240.00103 * 22 20 18 26 26 C 1.53007 * 117.49511 * 132.32265 * 15 14 13 27 27 C 1.53001 * 60.00079 * 252.50859 * 26 15 14 28 28 H 1.08997 * 109.47453 * 59.99627 * 1 2 3 29 29 H 1.09009 * 109.47398 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47094 * 299.99603 * 1 2 3 31 31 H 1.09006 * 109.46948 * 239.99886 * 2 1 3 32 32 H 1.08999 * 109.47029 * 120.00074 * 2 1 3 33 33 H 0.97005 * 119.99272 * 0.02562 * 3 2 1 34 34 H 0.96999 * 119.99618 * 359.97438 * 6 4 3 35 35 H 1.09006 * 109.47037 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47086 * 300.00004 * 8 7 6 37 37 H 1.08999 * 109.47279 * 60.00175 * 8 7 6 38 38 H 1.08996 * 109.47609 * 300.00234 * 9 7 6 39 39 H 1.09001 * 109.47316 * 60.01066 * 9 7 6 40 40 H 1.09006 * 109.47080 * 180.02562 * 9 7 6 41 41 H 0.96993 * 119.99695 * 0.02562 * 12 10 7 42 42 H 1.09007 * 109.47341 * 299.72797 * 13 12 10 43 43 H 1.09004 * 109.46896 * 59.72355 * 13 12 10 44 44 H 1.09006 * 109.46303 * 295.02368 * 14 13 12 45 45 H 1.08996 * 109.47109 * 55.01910 * 14 13 12 46 46 H 1.09004 * 109.46723 * 63.90248 * 16 15 14 47 47 H 1.08994 * 109.47478 * 183.89959 * 16 15 14 48 48 H 0.97001 * 119.99661 * 355.59221 * 17 16 15 49 49 H 0.97009 * 120.00052 * 180.02562 * 21 20 18 50 50 H 1.08991 * 117.49896 * 0.02562 * 26 15 14 51 51 H 1.09005 * 117.49414 * 145.01762 * 26 15 14 52 52 H 1.08996 * 117.49992 * 252.50878 * 27 26 15 53 53 H 1.09004 * 117.49813 * 107.49126 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7032 0.0005 6 7 3.7926 2.8982 0.0010 7 6 5.2330 3.1658 0.0010 8 6 5.8661 2.5504 -1.2484 9 6 5.8662 2.5494 1.2500 10 6 5.4672 4.6545 0.0010 11 8 6.4114 5.1198 0.6036 12 7 4.6275 5.4688 -0.6685 13 6 4.8586 6.9154 -0.6734 14 6 3.7739 7.6025 -1.5054 15 6 3.9420 9.1201 -1.4093 16 6 3.3441 9.7726 -0.1612 17 7 1.9214 9.4359 -0.0681 18 6 1.1932 9.8353 1.0206 19 1 1.6677 10.3981 1.8109 20 6 -0.1551 9.5168 1.1087 21 7 -0.7333 8.8305 0.1458 22 14 -1.1484 10.0609 2.5941 23 1 -0.2713 10.8120 3.5278 24 1 -2.2630 10.9361 2.1506 25 1 -1.7004 8.8676 3.2845 26 6 3.9010 9.9194 -2.7133 27 6 5.2276 9.7258 -1.9761 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3879 2.1185 0.0004 34 1 3.1623 3.6354 0.0007 35 1 6.9379 2.7492 -1.2482 36 1 5.6966 1.4736 -1.2489 37 1 5.4150 2.9895 -2.1382 38 1 5.4151 2.9879 2.1402 39 1 5.6968 1.4727 1.2496 40 1 6.9378 2.7490 1.2503 41 1 3.8722 5.0967 -1.1500 42 1 4.8256 7.2922 0.3489 43 1 5.8366 7.1256 -1.1067 44 1 3.8635 7.2921 -2.5465 45 1 2.7918 7.3209 -1.1256 46 1 3.8630 9.4058 0.7244 47 1 3.4579 10.8546 -0.2269 48 1 1.4953 8.9301 -0.7777 49 1 -1.6756 8.6082 0.2071 50 1 3.7539 9.3640 -3.6395 51 1 3.4478 10.9103 -2.6822 52 1 5.6473 10.5893 -1.4601 53 1 5.9537 9.0430 -2.4174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167376363.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:28 Heat of formation + Delta-G solvation = -60.839533 kcal Electronic energy + Delta-G solvation = -30584.872165 eV Core-core repulsion = 26491.564457 eV Total energy + Delta-G solvation = -4093.307708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.92528 -40.57014 -39.55935 -37.16145 -36.21587 -35.92141 -35.74379 -32.98631 -32.77481 -31.14960 -30.50325 -28.31612 -27.82354 -25.79883 -24.60531 -24.17309 -23.49981 -22.79900 -22.14228 -20.92349 -20.07325 -19.66422 -19.01575 -18.40685 -17.14897 -16.88237 -16.72666 -16.70037 -16.57229 -16.15066 -15.77230 -15.45470 -15.34348 -15.19662 -15.04749 -14.84533 -14.78270 -14.36306 -13.93600 -13.86556 -13.41294 -13.34336 -13.15781 -13.05794 -13.02684 -12.93825 -12.81656 -12.64664 -12.55259 -12.49265 -12.26561 -12.24232 -12.08240 -11.93042 -11.83833 -11.39034 -11.09473 -10.91932 -10.78748 -10.51417 -10.43623 -10.19867 -9.88323 -8.94965 -7.93748 -5.20335 1.22572 1.46905 1.48384 1.57224 1.74586 1.93748 2.11877 2.55176 2.90583 3.17804 3.39725 3.43515 3.81496 3.84917 3.88426 3.91587 4.00117 4.09875 4.15323 4.27337 4.27966 4.41364 4.48879 4.55348 4.58741 4.65910 4.67583 4.72818 4.79840 4.85769 4.94905 4.95266 4.98838 5.09204 5.09836 5.11695 5.18661 5.21855 5.27921 5.28283 5.30661 5.35238 5.37919 5.39755 5.51450 5.56517 5.86308 6.29327 6.35297 6.96665 7.02753 7.37100 7.52857 8.12309 8.39194 9.29416 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007617 B = 0.003219 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3675.205987 B = 8697.421897 C =11214.867779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 N -0.738 5.738 4 C 0.707 3.293 5 O -0.614 6.614 6 N -0.735 5.735 7 C 0.186 3.814 8 C -0.152 4.152 9 C -0.146 4.146 10 C 0.519 3.481 11 O -0.563 6.563 12 N -0.711 5.711 13 C 0.132 3.868 14 C -0.078 4.078 15 C -0.138 4.138 16 C 0.187 3.813 17 N -0.733 5.733 18 C -0.245 4.245 19 H 0.067 0.933 20 C -0.065 4.065 21 N -0.962 5.962 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.164 4.164 27 C -0.153 4.153 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.409 0.591 34 H 0.405 0.595 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.411 0.589 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.012 0.988 48 H 0.378 0.622 49 H 0.251 0.749 50 H 0.108 0.892 51 H 0.081 0.919 52 H 0.095 0.905 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 -14.589 -6.907 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 N -0.395 5.395 4 C 0.407 3.593 5 O -0.494 6.494 6 N -0.394 5.394 7 C 0.096 3.904 8 C -0.211 4.211 9 C -0.204 4.204 10 C 0.304 3.696 11 O -0.440 6.440 12 N -0.363 5.363 13 C 0.009 3.991 14 C -0.116 4.116 15 C -0.139 4.139 16 C 0.061 3.939 17 N -0.376 5.376 18 C -0.377 4.377 19 H 0.085 0.915 20 C -0.258 4.258 21 N -0.613 5.613 22 Si 0.794 3.206 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.219 1.219 26 C -0.201 4.201 27 C -0.190 4.190 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.244 0.756 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.248 0.752 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.030 0.970 48 H 0.211 0.789 49 H 0.060 0.940 50 H 0.127 0.873 51 H 0.100 0.900 52 H 0.113 0.887 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.512 -14.990 -6.304 18.840 hybrid contribution -1.892 0.918 0.638 2.198 sum 7.620 -14.072 -5.666 16.976 Atomic orbital electron populations 1.21976 0.92473 1.04146 1.03023 1.21227 0.95380 0.80912 1.01593 1.45251 1.04672 1.10268 1.79268 1.15974 0.83184 0.82818 0.77361 1.90847 1.55461 1.44087 1.59028 1.45186 1.06728 1.06862 1.80633 1.20273 0.80982 0.89919 0.99210 1.22145 1.01160 1.03144 0.94603 1.22016 1.01305 1.02180 0.94946 1.20664 0.82382 0.88538 0.78048 1.90721 1.31754 1.77047 1.44493 1.46013 1.30167 1.07593 1.52517 1.21256 0.99273 0.78435 1.00166 1.21119 0.98268 0.91704 1.00532 1.21394 1.03220 0.94063 0.95243 1.20223 0.84165 0.95358 0.94165 1.42413 1.05541 1.66422 1.23256 1.19600 0.92027 1.27484 0.98544 0.91478 1.25376 0.97795 1.01841 1.00813 1.69788 1.11218 1.45567 1.34682 0.85214 0.78662 0.77229 0.79504 1.19758 1.22057 1.21873 1.23053 1.00857 1.01084 0.95113 1.23052 0.90307 1.02994 1.02671 0.91375 0.89443 0.91834 0.92055 0.92601 0.75558 0.75808 0.90692 0.89826 0.90922 0.93323 0.90032 0.90783 0.75228 0.93574 0.90650 0.89204 0.91777 0.96563 0.97039 0.78884 0.93973 0.87341 0.90014 0.88655 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.03 71.98 0.72 -0.85 16 2 C 0.13 1.98 6.39 86.38 0.55 2.53 16 3 N -0.74 -12.33 5.56 -478.53 -2.66 -14.99 16 4 C 0.71 15.58 7.98 179.06 1.43 17.01 16 5 O -0.61 -17.20 12.55 -4.03 -0.05 -17.25 16 6 N -0.74 -14.45 4.86 -441.45 -2.15 -16.59 16 7 C 0.19 4.18 0.98 2.85 0.00 4.19 16 8 C -0.15 -3.05 8.38 71.98 0.60 -2.45 16 9 C -0.15 -3.64 7.93 71.98 0.57 -3.06 16 10 C 0.52 13.41 6.65 87.66 0.58 14.00 16 11 O -0.56 -18.78 16.10 -3.06 -0.05 -18.83 16 12 N -0.71 -15.81 5.25 -463.05 -2.43 -18.24 16 13 C 0.13 3.37 5.49 86.38 0.47 3.84 16 14 C -0.08 -2.01 5.20 30.59 0.16 -1.85 16 15 C -0.14 -3.99 1.65 -52.18 -0.09 -4.08 16 16 C 0.19 7.30 6.15 86.38 0.53 7.83 16 17 N -0.73 -35.46 5.23 -343.47 -1.80 -37.26 16 18 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 19 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 20 C -0.07 -3.62 5.50 84.86 0.47 -3.16 16 21 N -0.96 -55.73 13.06 21.65 0.28 -55.45 16 22 Si 0.96 45.02 29.55 68.60 2.03 47.04 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 C -0.16 -4.16 9.87 30.60 0.30 -3.86 16 27 C -0.15 -3.45 9.58 30.60 0.29 -3.16 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.41 5.26 8.49 -92.70 -0.79 4.47 16 34 H 0.41 6.79 7.25 -92.71 -0.67 6.12 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.08 1.90 6.16 -2.39 -0.01 1.89 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.08 2.14 6.16 -2.39 -0.01 2.13 16 40 H 0.07 1.83 7.87 -2.38 -0.02 1.81 16 41 H 0.41 7.17 7.22 -92.71 -0.67 6.50 16 42 H 0.05 1.46 7.96 -2.38 -0.02 1.44 16 43 H 0.08 1.81 7.72 -2.38 -0.02 1.80 16 44 H 0.09 1.82 7.93 -2.38 -0.02 1.80 16 45 H 0.06 2.00 6.94 -2.39 -0.02 1.98 16 46 H 0.02 0.67 7.96 -2.38 -0.02 0.65 16 47 H 0.01 0.47 8.10 -2.39 -0.02 0.45 16 48 H 0.38 19.02 6.80 -92.71 -0.63 18.39 16 49 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 50 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 51 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 52 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.11 2.09 7.90 -2.38 -0.02 2.07 16 Total: -1.00 -70.49 425.34 -1.20 -71.69 By element: Atomic # 1 Polarization: 47.28 SS G_CDS: -1.82 Total: 45.45 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 7.44 Total: 14.43 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -8.75 Total: -142.53 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.10 Total: -36.08 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.49 -1.20 -71.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167376363.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.849 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds