Wall clock time and date at job start Sat Apr 11 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47270 * 2 1 4 4 C 1.46903 * 111.00168 * 160.29382 * 3 2 1 5 5 C 1.52999 * 109.46766 * 287.71007 * 4 3 2 6 6 C 1.46904 * 110.99798 * 284.24085 * 3 2 1 7 7 C 1.50701 * 109.47265 * 170.00190 * 6 3 2 8 8 O 1.21287 * 119.99930 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00158 * 180.02562 * 7 6 3 10 10 C 1.46924 * 120.62905 * 359.71857 * 9 7 6 11 11 C 1.53627 * 108.54319 * 126.37351 * 10 9 7 12 12 C 1.53036 * 109.24233 * 54.85263 * 11 10 9 13 13 C 1.53044 * 109.53969 * 298.51313 * 12 11 10 14 14 H 1.09002 * 109.52009 * 301.39556 * 13 12 11 15 15 N 1.46893 * 109.49827 * 181.31846 * 13 12 11 16 16 C 1.46901 * 111.00183 * 155.16235 * 15 13 12 17 17 C 1.50700 * 109.47129 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00320 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00121 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00224 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00178 * 359.97438 * 20 19 17 22 22 C 1.38958 * 120.00078 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99805 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00176 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47140 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47291 * 119.99952 * 24 22 20 27 27 H 1.48496 * 109.47231 * 240.00211 * 24 22 20 28 28 C 1.46931 * 120.63105 * 179.97438 * 9 7 6 29 29 H 1.09003 * 109.46773 * 305.49154 * 1 2 3 30 30 H 1.08998 * 109.47261 * 65.48665 * 1 2 3 31 31 H 1.08994 * 109.47218 * 185.48929 * 1 2 3 32 32 H 1.08999 * 109.46915 * 239.99395 * 2 1 3 33 33 H 1.09006 * 109.47022 * 119.99745 * 2 1 3 34 34 H 1.09000 * 109.47280 * 47.70208 * 4 3 2 35 35 H 1.08997 * 109.47255 * 167.71166 * 4 3 2 36 36 H 1.09000 * 109.47206 * 298.94910 * 5 4 3 37 37 H 1.08999 * 109.47751 * 58.94474 * 5 4 3 38 38 H 1.08995 * 109.47379 * 178.95099 * 5 4 3 39 39 H 1.09000 * 109.47336 * 290.00268 * 6 3 2 40 40 H 1.09005 * 109.47013 * 50.00066 * 6 3 2 41 41 H 1.09003 * 109.58613 * 246.20483 * 10 9 7 42 42 H 1.09003 * 109.58683 * 6.62641 * 10 9 7 43 43 H 1.08998 * 109.62905 * 294.85858 * 11 10 9 44 44 H 1.08996 * 109.45875 * 174.74008 * 11 10 9 45 45 H 1.08997 * 109.45619 * 178.49224 * 12 11 10 46 46 H 1.08997 * 109.46269 * 58.53274 * 12 11 10 47 47 H 1.00896 * 111.00021 * 279.11554 * 15 13 12 48 48 H 1.09000 * 109.46723 * 299.99719 * 16 15 13 49 49 H 1.08995 * 109.46837 * 59.99666 * 16 15 13 50 50 H 0.97004 * 119.99461 * 359.97438 * 19 17 16 51 51 H 0.96999 * 120.00511 * 179.97438 * 23 22 20 52 52 H 1.09005 * 109.58405 * 353.37726 * 28 9 7 53 53 H 1.08997 * 109.58260 * 113.64928 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4125 1.4509 0.4624 5 6 3.4621 1.1927 1.9697 6 6 1.8771 1.9937 -1.3293 7 6 2.1547 3.4721 -1.2373 8 8 2.4425 3.9697 -0.1693 9 7 2.0821 4.2414 -2.3415 10 6 1.7396 3.6523 -3.6431 11 6 0.5539 4.4297 -4.2345 12 6 0.9049 5.9182 -4.2915 13 6 1.1629 6.4379 -2.8753 14 1 0.2768 6.2770 -2.2612 15 7 1.4687 7.8736 -2.9280 16 6 1.1490 8.5272 -1.6518 17 6 1.4746 9.9957 -1.7441 18 8 1.9289 10.4528 -2.7716 19 7 1.2621 10.8010 -0.6844 20 6 1.5589 12.1368 -0.7681 21 1 1.9633 12.5438 -1.6831 22 6 1.3393 12.9671 0.3242 23 7 0.8467 12.4720 1.4373 24 14 1.7429 14.7873 0.2099 25 1 2.2806 15.0913 -1.1406 26 1 0.5111 15.5832 0.4434 27 1 2.7585 15.1345 1.2362 28 6 2.3494 5.6843 -2.2674 29 1 -0.3633 0.5967 0.8368 30 1 -0.3634 0.4264 -0.9350 31 1 -0.3633 -1.0229 0.0983 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.0034 0.6953 -0.0552 35 1 3.8196 2.4393 0.2496 36 1 2.8865 1.9591 2.4888 37 1 3.0378 0.2119 2.1845 38 1 4.4972 1.2232 2.3097 39 1 2.5857 1.5332 -2.0178 40 1 0.8619 1.8366 -1.6939 41 1 2.5967 3.7225 -4.3129 42 1 1.4626 2.6065 -3.5094 43 1 -0.3265 4.2872 -3.6079 44 1 0.3469 4.0660 -5.2409 45 1 0.0762 6.4699 -4.7354 46 1 1.7998 6.0574 -4.8979 47 1 2.4327 8.0289 -3.1821 48 1 0.0877 8.4037 -1.4362 49 1 1.7370 8.0736 -0.8540 50 1 0.8992 10.4353 0.1375 51 1 0.6937 13.0514 2.2000 52 1 2.4750 5.9797 -1.2257 53 1 3.2568 5.9168 -2.8249 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210217504.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:37 Heat of formation + Delta-G solvation = -88.855736 kcal Electronic energy + Delta-G solvation = -30351.899606 eV Core-core repulsion = 26257.377025 eV Total energy + Delta-G solvation = -4094.522581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45290 -40.25041 -39.25451 -38.00949 -36.40158 -35.78389 -33.45786 -33.23543 -32.69777 -31.78636 -30.69594 -28.19756 -27.46260 -25.91531 -25.65338 -23.88121 -23.40131 -22.13598 -21.54548 -21.05787 -20.04150 -19.82741 -18.41205 -17.83778 -17.39231 -16.98839 -16.64036 -16.42889 -16.17298 -16.04775 -15.80227 -15.60063 -15.35183 -15.27964 -15.18687 -14.69600 -14.45083 -14.32042 -14.06067 -13.89061 -13.65243 -13.54524 -13.47534 -13.21728 -13.07932 -12.88567 -12.86666 -12.51605 -12.43280 -12.40559 -12.34465 -12.12287 -11.94533 -11.87001 -11.82677 -11.61313 -11.54684 -11.54088 -10.74936 -10.39440 -10.05447 -9.90534 -9.26754 -9.24986 -8.48944 -5.98489 1.35234 1.40213 1.55244 1.60959 1.85460 2.00374 2.27342 2.83655 2.94373 3.17554 3.42682 3.52407 3.78248 3.93343 4.01187 4.03263 4.07457 4.13284 4.22082 4.26291 4.27273 4.29334 4.33841 4.43013 4.49269 4.53250 4.57379 4.58569 4.70563 4.71846 4.74519 4.80614 4.83390 4.93160 4.96422 5.12047 5.13065 5.15159 5.30560 5.32121 5.34940 5.38978 5.42876 5.46878 5.85789 5.99457 6.04786 6.15742 6.31553 6.43880 6.55818 7.08982 7.20119 7.51676 8.06036 8.68884 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.002179 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.448952 B =12846.756982 C =14242.583879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.546 5.546 4 C 0.051 3.949 5 C -0.139 4.139 6 C 0.044 3.956 7 C 0.505 3.495 8 O -0.571 6.571 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.082 3.918 14 H 0.072 0.928 15 N -0.665 5.665 16 C 0.064 3.936 17 C 0.439 3.561 18 O -0.620 6.620 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.081 0.919 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.997 3.003 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.089 3.911 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.346 0.654 48 H 0.100 0.900 49 H 0.056 0.944 50 H 0.395 0.605 51 H 0.278 0.722 52 H 0.060 0.940 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -31.222 -7.742 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.271 5.271 4 C -0.077 4.077 5 C -0.196 4.196 6 C -0.086 4.086 7 C 0.294 3.706 8 O -0.449 6.449 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.164 4.164 12 C -0.142 4.142 13 C -0.028 4.028 14 H 0.090 0.910 15 N -0.296 5.296 16 C -0.068 4.068 17 C 0.227 3.773 18 O -0.506 6.506 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.820 3.180 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.037 4.037 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.143 0.857 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.165 0.835 48 H 0.118 0.882 49 H 0.074 0.926 50 H 0.229 0.771 51 H 0.087 0.913 52 H 0.078 0.922 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.409 -30.132 -7.638 31.088 hybrid contribution 1.231 0.582 0.875 1.619 sum 0.823 -29.550 -6.762 30.325 Atomic orbital electron populations 1.21776 0.94342 1.02236 1.01994 1.22219 0.96588 0.86947 1.01994 1.61676 1.21599 1.19434 1.24432 1.22094 0.88052 1.00746 0.96780 1.21682 1.01513 1.01552 0.94886 1.22055 1.04933 0.89600 0.92013 1.21272 0.76149 0.90264 0.82954 1.90698 1.49006 1.75567 1.29631 1.48213 1.69159 1.07435 1.09425 1.22207 0.98584 0.98618 0.82588 1.21980 0.97749 0.93584 1.03083 1.21486 1.02586 0.96131 0.94032 1.21990 0.96902 0.85226 0.98731 0.90975 1.60316 1.29544 1.10363 1.29373 1.21553 1.02573 0.90428 0.92258 1.20738 0.83322 0.89383 0.83874 1.90480 1.51061 1.77588 1.31503 1.41965 1.57113 1.08220 1.13749 1.19733 1.41713 0.84559 1.00289 0.90075 1.26125 0.96374 1.04853 0.94191 1.69692 1.44602 1.38355 1.03642 0.84820 0.78301 0.76528 0.78365 1.19577 1.19482 1.19593 1.22243 0.98646 0.81153 1.01613 0.93584 0.92296 0.90685 0.92894 0.90208 0.93786 0.92332 0.94099 0.91592 0.91803 0.89560 0.85675 0.89680 0.86978 0.91547 0.87503 0.91434 0.91248 0.83454 0.88189 0.92633 0.77133 0.91257 0.92171 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.94 71.98 0.72 -0.80 16 2 C 0.05 0.56 5.54 86.30 0.48 1.04 16 3 N -0.55 -9.55 4.13 -900.77 -3.72 -13.27 16 4 C 0.05 0.96 5.23 86.30 0.45 1.41 16 5 C -0.14 -2.51 10.00 71.98 0.72 -1.79 16 6 C 0.04 0.63 3.62 85.56 0.31 0.94 16 7 C 0.50 11.47 7.26 87.66 0.64 12.11 16 8 O -0.57 -18.90 13.90 -3.05 -0.04 -18.95 16 9 N -0.61 -11.57 2.97 -818.13 -2.43 -14.00 16 10 C 0.10 1.00 6.37 86.51 0.55 1.55 16 11 C -0.13 -1.35 6.10 30.82 0.19 -1.16 16 12 C -0.10 -1.89 5.49 30.62 0.17 -1.72 16 13 C 0.08 2.01 2.62 44.98 0.12 2.13 16 14 H 0.07 1.89 7.80 -2.39 -0.02 1.88 16 15 N -0.66 -21.66 5.87 -495.27 -2.91 -24.57 16 16 C 0.06 2.41 5.97 85.56 0.51 2.92 16 17 C 0.44 21.92 7.82 87.66 0.69 22.61 16 18 O -0.62 -35.23 15.78 -3.06 -0.05 -35.28 16 19 N -0.57 -30.90 5.29 -306.99 -1.62 -32.53 16 20 C -0.33 -19.56 9.68 84.04 0.81 -18.74 16 21 H 0.08 5.04 7.16 -2.91 -0.02 5.01 16 22 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 23 N -0.92 -51.62 13.05 21.67 0.28 -51.33 16 24 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 C 0.09 2.15 5.68 86.34 0.49 2.64 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.52 6.97 -2.39 -0.02 0.51 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.42 8.00 -2.39 -0.02 0.40 16 33 H 0.08 0.89 6.25 -2.38 -0.01 0.88 16 34 H 0.04 0.65 8.05 -2.39 -0.02 0.63 16 35 H 0.06 1.47 5.81 -2.39 -0.01 1.45 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.96 6.53 -2.39 -0.02 0.94 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.80 7.91 -2.39 -0.02 0.78 16 40 H 0.13 1.23 6.28 -2.38 -0.01 1.22 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.11 0.47 5.93 -2.39 -0.01 0.46 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.35 11.68 8.12 -89.70 -0.73 10.95 16 48 H 0.10 3.48 8.06 -2.39 -0.02 3.46 16 49 H 0.06 1.99 7.56 -2.39 -0.02 1.97 16 50 H 0.40 20.51 7.90 -92.71 -0.73 19.77 16 51 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 52 H 0.06 1.87 6.48 -2.38 -0.02 1.85 16 53 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 Total: -1.00 -76.93 413.09 -1.70 -78.62 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -0.54 Total: 42.47 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 7.30 Total: 22.73 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -10.39 Total: -135.70 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.09 Total: -54.23 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -76.93 -1.70 -78.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210217504.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.231 kcal (2) G-P(sol) polarization free energy of solvation -76.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds