Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47073 * 2 1 4 4 C 1.46901 * 110.99788 * 293.95231 * 3 2 1 5 5 C 1.46901 * 110.99790 * 170.00177 * 3 2 1 6 6 C 1.53000 * 109.46769 * 190.00085 * 5 3 2 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 3 8 8 O 1.21273 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62906 * 359.71711 * 9 7 6 11 11 C 1.52764 * 109.00591 * 233.58409 * 10 9 7 12 12 C 1.53038 * 109.38398 * 305.59101 * 11 10 9 13 13 C 1.53037 * 109.53876 * 61.23747 * 12 11 10 14 14 H 1.09003 * 109.49450 * 58.59227 * 13 12 11 15 15 N 1.46899 * 109.52147 * 178.66764 * 13 12 11 16 16 C 1.46900 * 111.00021 * 204.85601 * 15 13 12 17 17 C 1.50700 * 109.47200 * 180.02562 * 16 15 13 18 18 O 1.21293 * 120.00203 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99663 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99781 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99985 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00350 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00667 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99750 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47076 * 89.99824 * 24 22 20 26 26 H 1.48504 * 109.47412 * 209.99977 * 24 22 20 27 27 H 1.48493 * 109.47348 * 330.00088 * 24 22 20 28 28 C 1.46923 * 120.62868 * 179.97438 * 9 7 6 29 29 H 1.09002 * 109.47148 * 59.99731 * 1 2 3 30 30 H 1.09002 * 109.47653 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47179 * 300.00086 * 1 2 3 32 32 H 1.09003 * 109.47179 * 239.99914 * 2 1 3 33 33 H 1.08993 * 109.47094 * 120.00075 * 2 1 3 34 34 H 1.09001 * 109.47121 * 296.04690 * 4 3 2 35 35 H 1.09005 * 109.47342 * 56.04784 * 4 3 2 36 36 H 1.08999 * 109.46894 * 176.04703 * 4 3 2 37 37 H 1.09002 * 109.47401 * 69.99793 * 5 3 2 38 38 H 1.09001 * 109.46874 * 309.99805 * 5 3 2 39 39 H 1.09001 * 109.47194 * 299.99524 * 6 5 3 40 40 H 1.08992 * 109.47399 * 59.99697 * 6 5 3 41 41 H 1.08994 * 109.58928 * 353.41968 * 10 9 7 42 42 H 1.08998 * 109.59054 * 113.84667 * 10 9 7 43 43 H 1.09005 * 109.56273 * 185.55024 * 11 10 9 44 44 H 1.09000 * 109.35802 * 65.50097 * 11 10 9 45 45 H 1.08999 * 109.45651 * 301.21720 * 12 11 10 46 46 H 1.08997 * 109.44971 * 181.25743 * 12 11 10 47 47 H 1.00898 * 111.00480 * 80.90384 * 15 13 12 48 48 H 1.09000 * 109.47220 * 300.00548 * 16 15 13 49 49 H 1.09002 * 109.47190 * 59.99930 * 16 15 13 50 50 H 0.96999 * 120.00230 * 0.02562 * 19 17 16 51 51 H 0.96991 * 120.00379 * 179.97438 * 23 22 20 52 52 H 1.09005 * 109.58150 * 246.15224 * 28 9 7 53 53 H 1.08996 * 109.58821 * 6.57886 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 -1.2534 5 6 3.4685 1.4311 0.2381 6 6 3.8998 2.8791 0.4791 7 6 5.3863 2.9265 0.7227 8 8 6.0365 1.9029 0.7058 9 7 5.9929 4.1063 0.9605 10 6 5.2195 5.3554 0.9791 11 6 5.8609 6.3522 0.0154 12 6 7.3396 6.5227 0.3709 13 6 8.0585 5.1793 0.2282 14 1 7.9497 4.8151 -0.7934 15 7 9.4842 5.3501 0.5386 16 6 10.2939 4.3170 -0.1209 17 6 11.7471 4.5238 0.2205 18 8 12.0760 5.4418 0.9418 19 7 12.6814 3.6887 -0.2758 20 6 14.0034 3.8771 0.0343 21 1 14.2962 4.6945 0.6767 22 6 14.9667 3.0165 -0.4776 23 7 16.2339 3.1968 -0.1800 24 14 14.4604 1.6032 -1.5891 25 1 14.4713 2.0570 -3.0031 26 1 15.4140 0.4769 -1.4234 27 1 13.0934 1.1520 -1.2247 28 6 7.4411 4.1685 1.2003 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1769 1.5790 -2.0860 35 1 0.5919 2.0179 -1.4053 36 1 1.9824 3.1098 -1.1988 37 1 3.9925 1.0359 -0.6321 38 1 3.7122 0.8289 1.1134 39 1 3.6562 3.4813 -0.3962 40 1 3.3758 3.2743 1.3492 41 1 4.1945 5.1552 0.6670 42 1 5.2221 5.7719 1.9864 43 1 5.3543 7.3141 0.0946 44 1 5.7727 5.9769 -1.0041 45 1 7.4277 6.8744 1.3988 46 1 7.7930 7.2505 -0.3020 47 1 9.6398 5.3497 1.5355 48 1 9.9769 3.3324 0.2228 49 1 10.1607 4.3851 -1.2006 50 1 12.4184 2.9547 -0.8530 51 1 16.9063 2.5959 -0.5371 52 1 7.6282 4.4864 2.2261 53 1 7.8816 3.1854 1.0341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210481906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -90.924750 kcal Electronic energy + Delta-G solvation = -29860.572839 eV Core-core repulsion = 25765.960539 eV Total energy + Delta-G solvation = -4094.612301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42648 -40.36377 -39.16940 -38.43163 -36.44074 -35.83500 -33.80570 -33.54729 -33.23080 -31.28800 -30.22874 -28.17547 -27.61869 -26.31272 -25.66206 -23.73843 -23.35744 -21.90161 -21.59069 -21.26411 -20.33797 -19.82251 -18.43468 -17.81372 -17.33928 -17.09487 -16.91135 -16.56594 -16.23102 -16.10056 -15.91560 -15.46517 -15.39728 -15.18672 -15.06553 -14.79160 -14.54915 -14.38391 -14.28477 -14.11454 -13.88519 -13.70381 -13.50124 -13.29397 -13.08730 -12.92296 -12.79426 -12.68430 -12.45189 -12.33727 -12.27820 -12.02657 -11.92701 -11.88929 -11.76771 -11.72735 -11.61437 -11.55385 -10.90355 -10.48680 -10.28324 -9.93033 -9.37386 -9.27270 -8.44569 -6.05317 1.27722 1.31572 1.40544 1.57070 1.86531 1.90940 2.19181 2.66296 2.91655 3.11155 3.32691 3.60389 3.77513 3.83711 3.95206 4.01148 4.07206 4.10937 4.14377 4.14912 4.26820 4.29250 4.31792 4.43624 4.50533 4.54814 4.58820 4.61340 4.63838 4.71183 4.74802 4.83209 4.87421 4.92203 4.95759 5.00506 5.03752 5.13467 5.14295 5.30767 5.34185 5.37123 5.46594 5.50241 5.86939 5.98911 6.01304 6.07930 6.28738 6.38395 6.55504 6.83786 7.11919 7.35182 7.90509 8.72854 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.002085 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.504968 B =13425.353765 C =15074.848262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.545 5.545 4 C 0.013 3.987 5 C 0.073 3.927 6 C -0.121 4.121 7 C 0.508 3.492 8 O -0.593 6.593 9 N -0.605 5.605 10 C 0.100 3.900 11 C -0.126 4.126 12 C -0.106 4.106 13 C 0.083 3.917 14 H 0.078 0.922 15 N -0.669 5.669 16 C 0.061 3.939 17 C 0.450 3.550 18 O -0.611 6.611 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.058 0.942 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.962 3.038 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.238 1.238 28 C 0.084 3.916 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.019 0.981 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.347 0.653 48 H 0.066 0.934 49 H 0.111 0.889 50 H 0.388 0.612 51 H 0.280 0.720 52 H 0.072 0.928 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.317 -1.451 -3.323 38.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.269 5.269 4 C -0.134 4.134 5 C -0.055 4.055 6 C -0.161 4.161 7 C 0.298 3.702 8 O -0.473 6.473 9 N -0.338 5.338 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.028 4.028 14 H 0.096 0.904 15 N -0.300 5.300 16 C -0.072 4.072 17 C 0.238 3.762 18 O -0.495 6.495 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.076 0.924 22 C -0.211 4.211 23 N -0.571 5.571 24 Si 0.782 3.218 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.161 1.161 28 C -0.041 4.041 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.166 0.834 48 H 0.084 0.916 49 H 0.129 0.871 50 H 0.224 0.776 51 H 0.089 0.911 52 H 0.090 0.910 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -37.667 -0.700 -2.969 37.790 hybrid contribution 1.311 -2.095 -0.466 2.515 sum -36.356 -2.796 -3.435 36.625 Atomic orbital electron populations 1.21760 0.93396 1.02264 1.02587 1.22155 0.97190 0.88371 1.00585 1.62072 1.12556 1.16565 1.35721 1.22600 1.02249 0.99786 0.88791 1.21711 0.87349 0.96045 1.00409 1.21610 0.89429 0.98832 1.06237 1.21323 0.91388 0.82423 0.75087 1.90701 1.68107 1.35006 1.53529 1.48193 1.07811 1.07821 1.69953 1.22045 0.96150 0.82611 1.01299 1.21839 0.94425 1.00645 0.99544 1.21499 0.95160 0.95109 1.02666 1.22007 0.85866 0.96179 0.98715 0.90375 1.60306 1.05305 1.48061 1.16335 1.21660 0.88753 0.94957 1.01804 1.20855 0.88592 0.83426 0.83352 1.90538 1.83029 1.34431 1.41487 1.42053 1.06073 1.28742 1.46378 1.19025 0.82195 1.14458 1.30191 0.92367 1.26062 0.94489 1.01225 0.99329 1.69789 1.01602 1.39952 1.45802 0.85408 0.79870 0.77580 0.78963 1.17953 1.19769 1.16130 1.22328 0.81465 1.00592 0.99713 0.92102 0.91466 0.91986 0.95338 0.91189 0.96217 0.89973 0.89773 0.95888 0.91681 0.86402 0.85957 0.86647 0.89886 0.87610 0.91371 0.91485 0.91407 0.83409 0.91623 0.87055 0.77635 0.91066 0.91014 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.84 71.98 0.71 -0.53 16 2 C 0.04 0.55 5.68 86.30 0.49 1.04 16 3 N -0.54 -6.88 4.76 -922.44 -4.39 -11.27 16 4 C 0.01 0.12 9.13 127.69 1.17 1.29 16 5 C 0.07 1.17 4.25 86.30 0.37 1.54 16 6 C -0.12 -1.44 3.97 29.85 0.12 -1.33 16 7 C 0.51 10.26 7.70 87.66 0.67 10.93 16 8 O -0.59 -17.94 15.39 -3.01 -0.05 -17.99 16 9 N -0.60 -10.25 2.98 -819.67 -2.44 -12.69 16 10 C 0.10 0.86 6.31 86.22 0.54 1.40 16 11 C -0.13 -1.16 6.06 30.53 0.19 -0.97 16 12 C -0.11 -1.74 5.49 30.62 0.17 -1.57 16 13 C 0.08 1.79 2.62 45.00 0.12 1.91 16 14 H 0.08 1.74 7.80 -2.39 -0.02 1.72 16 15 N -0.67 -19.92 5.88 -495.11 -2.91 -22.83 16 16 C 0.06 1.99 5.97 85.56 0.51 2.50 16 17 C 0.45 21.05 7.82 87.66 0.69 21.73 16 18 O -0.61 -34.41 15.78 -3.07 -0.05 -34.45 16 19 N -0.59 -28.99 5.09 -306.98 -1.56 -30.56 16 20 C -0.33 -19.77 10.16 84.04 0.85 -18.92 16 21 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 22 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 23 N -0.93 -56.91 13.96 21.66 0.30 -56.61 16 24 Si 0.96 40.24 27.74 68.60 1.90 42.14 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.24 -8.66 6.52 99.48 0.65 -8.02 16 28 C 0.08 1.83 5.69 86.38 0.49 2.32 16 29 H 0.06 0.46 6.47 -2.39 -0.02 0.44 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.03 0.37 8.12 -2.39 -0.02 0.36 16 33 H 0.07 0.91 7.93 -2.39 -0.02 0.89 16 34 H 0.02 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.08 0.59 6.30 -2.38 -0.02 0.57 16 36 H 0.08 0.51 6.47 -2.39 -0.02 0.49 16 37 H 0.02 0.45 8.08 -2.39 -0.02 0.43 16 38 H 0.06 1.25 7.89 -2.39 -0.02 1.23 16 39 H 0.12 0.84 6.09 -2.39 -0.01 0.83 16 40 H 0.12 1.01 7.95 -2.39 -0.02 1.00 16 41 H 0.12 0.35 5.93 -2.39 -0.01 0.34 16 42 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.35 10.94 8.12 -89.70 -0.73 10.22 16 48 H 0.07 1.95 7.56 -2.39 -0.02 1.93 16 49 H 0.11 3.18 8.06 -2.39 -0.02 3.16 16 50 H 0.39 16.11 5.76 -92.71 -0.53 15.57 16 51 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 52 H 0.07 1.52 8.05 -2.38 -0.02 1.50 16 53 H 0.06 1.79 6.48 -2.39 -0.02 1.77 16 Total: -1.00 -82.35 412.39 -2.06 -84.41 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: -0.41 Total: 38.72 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.55 Total: 21.14 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -11.00 Total: -133.96 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.09 Total: -52.44 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.90 Total: 42.14 kcal Total: -82.35 -2.06 -84.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210481906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.515 kcal (2) G-P(sol) polarization free energy of solvation -82.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds