Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.37137 * 2 1 4 4 C 1.54005 * 110.32503 * 237.81303 * 2 1 3 5 5 N 1.47485 * 107.24392 * 242.31631 * 4 2 1 6 6 C 1.34786 * 127.03052 * 154.61643 * 5 4 2 7 7 O 1.21282 * 119.99889 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00123 * 0.02562 * 6 5 4 9 9 C 1.52998 * 109.47313 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47248 * 180.02562 * 9 8 6 11 11 N 1.46894 * 109.47018 * 179.97438 * 10 9 8 12 12 C 1.46906 * 111.00207 * 169.99946 * 11 10 9 13 13 C 1.46897 * 111.00196 * 293.95222 * 11 10 9 14 14 C 1.48377 * 105.79701 * 334.78511 * 5 4 2 15 15 C 1.54616 * 110.32548 * 122.19255 * 2 1 3 16 16 H 1.09002 * 110.74101 * 22.40549 * 15 2 1 17 17 N 1.46899 * 110.74125 * 259.25639 * 15 2 1 18 18 C 1.46896 * 110.99966 * 154.99732 * 17 15 2 19 19 C 1.50702 * 109.47193 * 180.02562 * 18 17 15 20 20 O 1.21301 * 119.99779 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00312 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.99906 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00064 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99593 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00503 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99821 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47169 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.47204 * 120.00106 * 26 24 22 29 29 H 1.48497 * 109.47101 * 239.99807 * 26 24 22 30 30 H 1.09002 * 109.47188 * 180.73064 * 1 2 3 31 31 H 1.08995 * 109.47348 * 300.73257 * 1 2 3 32 32 H 1.09002 * 109.47358 * 60.73265 * 1 2 3 33 33 H 1.09002 * 109.91501 * 1.77607 * 4 2 1 34 34 H 1.08999 * 109.90987 * 122.86218 * 4 2 1 35 35 H 1.09006 * 109.47325 * 300.00506 * 8 6 5 36 36 H 1.09007 * 109.47058 * 59.99864 * 8 6 5 37 37 H 1.09000 * 109.46735 * 300.00381 * 9 8 6 38 38 H 1.08995 * 109.46971 * 60.00032 * 9 8 6 39 39 H 1.08999 * 109.46947 * 300.00366 * 10 9 8 40 40 H 1.09005 * 109.47302 * 60.00142 * 10 9 8 41 41 H 1.09000 * 109.46716 * 60.00060 * 12 11 10 42 42 H 1.08991 * 109.47169 * 179.97438 * 12 11 10 43 43 H 1.09000 * 109.46997 * 300.00785 * 12 11 10 44 44 H 1.09002 * 109.47184 * 60.00297 * 13 11 10 45 45 H 1.09001 * 109.47229 * 180.02562 * 13 11 10 46 46 H 1.09000 * 109.47372 * 300.00219 * 13 11 10 47 47 H 1.09005 * 110.51886 * 280.62106 * 14 5 4 48 48 H 1.09006 * 110.83140 * 157.65823 * 14 5 4 49 49 H 1.00908 * 110.99778 * 31.04873 * 17 15 2 50 50 H 1.08999 * 109.47699 * 300.00363 * 18 17 15 51 51 H 1.09001 * 109.46811 * 60.00849 * 18 17 15 52 52 H 0.96997 * 120.00063 * 0.02562 * 21 19 18 53 53 H 0.96998 * 120.00562 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7693 -1.2222 5 7 2.8305 -1.9222 -0.7124 6 6 3.0657 -3.0863 -1.3498 7 8 3.7158 -3.9544 -0.8069 8 6 2.5210 -3.3092 -2.7371 9 6 2.9278 -4.7002 -3.2274 10 6 2.3754 -4.9262 -4.6362 11 7 2.7665 -6.2615 -5.1071 12 6 2.0628 -6.6088 -6.3490 13 6 4.2220 -6.3519 -5.2839 14 6 3.2835 -1.5370 0.6470 15 6 2.0671 -0.7725 1.2270 16 1 1.3174 -1.4685 1.6033 17 7 2.4879 0.1572 2.2836 18 6 2.4315 -0.4854 3.6034 19 6 2.8686 0.4968 4.6595 20 8 3.1945 1.6217 4.3438 21 7 2.8973 0.1254 5.9547 22 6 3.2955 1.0188 6.9154 23 1 3.5857 2.0204 6.6343 24 6 3.3256 0.6357 8.2506 25 7 2.9730 -0.5831 8.5926 26 14 3.8673 1.8532 9.5597 27 1 4.2097 3.1486 8.9195 28 1 2.7638 2.0584 10.5319 29 1 5.0586 1.3205 10.2684 30 1 -0.3634 -1.0276 0.0131 31 1 -0.3634 0.5251 0.8833 32 1 -0.3634 0.5024 -0.8965 33 1 1.2333 -1.1174 -1.8349 34 1 2.7153 -0.1233 -1.8119 35 1 1.4337 -3.2350 -2.7169 36 1 2.9241 -2.5535 -3.4115 37 1 4.0151 -4.7746 -3.2476 38 1 2.5244 -5.4555 -2.5531 39 1 1.2881 -4.8515 -4.6163 40 1 2.7792 -4.1708 -5.3104 41 1 2.3081 -5.8800 -7.1215 42 1 2.3712 -7.6018 -6.6758 43 1 0.9874 -6.6019 -6.1713 44 1 4.7164 -6.1584 -4.3319 45 1 4.4842 -7.3505 -5.6335 46 1 4.5455 -5.6138 -6.0179 47 1 4.1554 -0.8853 0.5888 48 1 3.5044 -2.4200 1.2467 49 1 1.9317 0.9990 2.2673 50 1 1.4104 -0.8073 3.8075 51 1 3.0945 -1.3506 3.6148 52 1 2.6370 -0.7743 6.2072 53 1 2.9943 -0.8507 9.5247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215421917.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -94.531044 kcal Electronic energy + Delta-G solvation = -29289.544930 eV Core-core repulsion = 25194.776249 eV Total energy + Delta-G solvation = -4094.768681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.24824 -40.18061 -39.21959 -38.44440 -36.22031 -35.55485 -34.22134 -33.43828 -33.20147 -30.44051 -28.71537 -28.46041 -27.56797 -27.21545 -25.91772 -24.16773 -22.95354 -21.74011 -21.42010 -20.96946 -20.22012 -19.86296 -18.20610 -17.75801 -17.37264 -16.92670 -16.76237 -16.59047 -16.41627 -16.02598 -15.80550 -15.62715 -15.50413 -15.20908 -14.98249 -14.75718 -14.47548 -14.16712 -13.98884 -13.79355 -13.52532 -13.48893 -13.28546 -13.17239 -13.03135 -12.97158 -12.79225 -12.70370 -12.58329 -12.41448 -12.30834 -12.21739 -12.11892 -12.01748 -11.91365 -11.58514 -11.54702 -11.52156 -10.91093 -10.36390 -10.02911 -9.77839 -9.39800 -9.28995 -8.47555 -5.96686 1.36312 1.41706 1.56098 1.61797 1.87489 2.03079 2.28708 2.88860 3.04330 3.19656 3.33922 3.49414 3.61143 3.78665 3.95334 3.99291 4.09754 4.22882 4.25748 4.29823 4.32899 4.40628 4.45644 4.48261 4.51155 4.52764 4.55885 4.60499 4.66851 4.71483 4.75309 4.79225 4.79828 4.89555 4.91368 5.01400 5.02977 5.03839 5.10187 5.18395 5.25717 5.36945 5.38930 5.40834 5.87642 6.07148 6.08438 6.13462 6.35929 6.56922 6.58119 7.11207 7.13764 7.54434 8.08932 8.70073 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.022458 B = 0.001643 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.447138 B =17036.427838 C =17812.721889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.097 0.903 4 C 0.108 3.892 5 N -0.622 5.622 6 C 0.522 3.478 7 O -0.593 6.593 8 C -0.121 4.121 9 C -0.097 4.097 10 C 0.060 3.940 11 N -0.570 5.570 12 C 0.025 3.975 13 C 0.021 3.979 14 C 0.112 3.888 15 C 0.081 3.919 16 H 0.062 0.938 17 N -0.666 5.666 18 C 0.065 3.935 19 C 0.439 3.561 20 O -0.620 6.620 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.081 0.919 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.031 0.969 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.354 0.646 50 H 0.068 0.932 51 H 0.094 0.906 52 H 0.396 0.604 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 -7.311 -30.624 32.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.116 0.884 4 C -0.014 4.014 5 N -0.356 5.356 6 C 0.314 3.686 7 O -0.474 6.474 8 C -0.161 4.161 9 C -0.135 4.135 10 C -0.068 4.068 11 N -0.295 5.295 12 C -0.123 4.123 13 C -0.127 4.127 14 C -0.012 4.012 15 C -0.030 4.030 16 H 0.080 0.920 17 N -0.300 5.300 18 C -0.068 4.068 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.099 0.901 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.198 1.198 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.174 0.826 50 H 0.086 0.914 51 H 0.112 0.888 52 H 0.229 0.771 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.568 -7.663 -30.165 31.809 hybrid contribution -0.129 0.428 1.033 1.126 sum -6.698 -7.235 -29.132 30.755 Atomic orbital electron populations 1.21864 0.92434 1.02426 1.03126 1.22285 0.97431 1.00126 0.92478 0.88446 1.22401 0.96445 0.86326 0.96229 1.48942 1.53698 1.15746 1.17166 1.21157 0.79243 0.79319 0.88914 1.90711 1.42839 1.44243 1.69618 1.21611 1.04047 0.99573 0.90874 1.21250 1.00753 0.95319 0.96216 1.22126 1.01329 0.88716 0.94587 1.61929 1.07242 1.28572 1.31716 1.22410 0.99541 1.00952 0.89393 1.22435 0.87646 1.01693 1.00966 1.22387 0.97463 0.98177 0.83175 1.22651 0.94688 0.94019 0.91624 0.92042 1.59943 1.61055 1.07609 1.01376 1.21576 1.01133 0.95848 0.88206 1.20775 0.83376 0.89428 0.83739 1.90490 1.54772 1.23508 1.81862 1.41951 1.59107 1.14637 1.05366 1.19729 1.43245 0.95989 0.87381 0.90121 1.26062 0.96889 0.98665 0.99687 1.69680 1.48165 1.18724 1.19641 0.84852 0.78169 0.77807 0.77391 1.19621 1.19517 1.19778 0.92247 0.93053 0.89720 0.87409 0.89570 0.86025 0.86389 0.92962 0.92714 0.89279 0.93608 0.95074 0.91075 0.90641 0.92038 0.90932 0.95028 0.91031 0.92480 0.82551 0.91408 0.88767 0.77081 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.89 71.98 0.64 -1.01 16 2 C -0.10 -1.57 3.08 -9.90 -0.03 -1.60 16 3 H 0.10 1.55 7.94 -2.39 -0.02 1.53 16 4 C 0.11 1.31 6.41 86.53 0.55 1.86 16 5 N -0.62 -12.65 3.30 -808.69 -2.67 -15.32 16 6 C 0.52 11.86 7.89 87.65 0.69 12.55 16 7 O -0.59 -19.73 16.21 -3.04 -0.05 -19.78 16 8 C -0.12 -1.49 4.78 29.85 0.14 -1.35 16 9 C -0.10 -1.54 4.43 30.59 0.14 -1.40 16 10 C 0.06 0.68 4.96 86.30 0.43 1.11 16 11 N -0.57 -8.03 5.02 -948.86 -4.76 -12.79 16 12 C 0.02 0.24 9.57 127.69 1.22 1.46 16 13 C 0.02 0.28 9.32 127.69 1.19 1.47 16 14 C 0.11 2.88 6.78 86.68 0.59 3.47 16 15 C 0.08 1.84 2.94 46.13 0.14 1.98 16 16 H 0.06 1.40 7.54 -2.39 -0.02 1.39 16 17 N -0.67 -20.05 5.98 -489.32 -2.93 -22.98 16 18 C 0.06 2.25 6.03 85.56 0.52 2.76 16 19 C 0.44 20.95 7.82 87.66 0.69 21.64 16 20 O -0.62 -34.03 15.78 -3.10 -0.05 -34.08 16 21 N -0.57 -29.78 5.29 -306.98 -1.62 -31.40 16 22 C -0.33 -19.12 9.68 84.04 0.81 -18.30 16 23 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -50.34 13.05 21.66 0.28 -50.05 16 26 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 30 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.66 7.08 -2.39 -0.02 0.64 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 0.85 7.91 -2.38 -0.02 0.83 16 36 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.05 1.02 6.51 -2.39 -0.02 1.01 16 38 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 39 H 0.09 0.77 8.06 -2.39 -0.02 0.75 16 40 H 0.05 0.43 8.12 -2.38 -0.02 0.41 16 41 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.07 0.63 8.12 -2.39 -0.02 0.62 16 43 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 44 H 0.06 0.97 6.47 -2.39 -0.02 0.95 16 45 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 46 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.06 1.73 7.87 -2.38 -0.02 1.71 16 49 H 0.35 10.70 8.03 -89.69 -0.72 9.98 16 50 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 51 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 52 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 53 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -76.01 426.31 -2.15 -78.16 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.56 Total: 38.61 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 8.18 Total: 24.38 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -11.70 Total: -132.54 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -0.10 Total: -53.86 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -76.01 -2.15 -78.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215421917.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.374 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds