Wall clock time and date at job start Sat Apr 11 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47172 * 2 1 4 4 C 1.46904 * 110.99836 * 160.28499 * 3 2 1 5 5 C 1.52997 * 109.47538 * 287.71447 * 4 3 2 6 6 C 1.46900 * 110.99961 * 284.24374 * 3 2 1 7 7 C 1.50697 * 109.46853 * 170.00278 * 6 3 2 8 8 O 1.21281 * 120.00373 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99758 * 179.72875 * 7 6 3 10 10 C 1.48116 * 127.03245 * 359.94694 * 9 7 6 11 11 C 1.54602 * 103.42367 * 219.28961 * 10 9 7 12 12 H 1.09001 * 110.72786 * 81.24437 * 11 10 9 13 13 C 1.52998 * 110.83448 * 204.44762 * 11 10 9 14 14 C 1.54612 * 102.91249 * 322.87119 * 11 10 9 15 15 H 1.08991 * 110.32740 * 262.80321 * 14 11 10 16 16 N 1.46903 * 110.41263 * 140.62957 * 14 11 10 17 17 C 1.46902 * 110.99895 * 157.87379 * 16 14 11 18 18 C 1.50700 * 109.47139 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99781 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00250 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00045 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00060 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99971 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99665 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00069 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47275 * 60.00480 * 25 23 21 27 27 H 1.48502 * 109.47060 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47077 * 300.00326 * 25 23 21 29 29 C 1.47489 * 127.03477 * 180.27419 * 9 7 6 30 30 H 1.09004 * 109.46591 * 65.48717 * 1 2 3 31 31 H 1.08999 * 109.47333 * 185.48377 * 1 2 3 32 32 H 1.09000 * 109.47513 * 305.48743 * 1 2 3 33 33 H 1.09003 * 109.47571 * 239.99901 * 2 1 3 34 34 H 1.09007 * 109.46832 * 119.99960 * 2 1 3 35 35 H 1.09000 * 109.46803 * 47.71488 * 4 3 2 36 36 H 1.09001 * 109.46921 * 167.71276 * 4 3 2 37 37 H 1.08998 * 109.47216 * 178.95418 * 5 4 3 38 38 H 1.09001 * 109.46693 * 298.95252 * 5 4 3 39 39 H 1.09004 * 109.47094 * 58.94763 * 5 4 3 40 40 H 1.08995 * 109.46888 * 49.99741 * 6 3 2 41 41 H 1.09003 * 109.46816 * 289.99790 * 6 3 2 42 42 H 1.08995 * 110.66450 * 337.77554 * 10 9 7 43 43 H 1.08999 * 110.65897 * 100.89762 * 10 9 7 44 44 H 1.08999 * 109.47175 * 173.56776 * 13 11 10 45 45 H 1.09006 * 109.47237 * 293.56567 * 13 11 10 46 46 H 1.08996 * 109.47105 * 53.56782 * 13 11 10 47 47 H 1.00903 * 110.99867 * 33.92283 * 16 14 11 48 48 H 1.09005 * 109.46947 * 299.99971 * 17 16 14 49 49 H 1.08998 * 109.47352 * 60.00299 * 17 16 14 50 50 H 0.96993 * 119.99805 * 0.02562 * 20 18 17 51 51 H 0.97002 * 119.99749 * 179.97438 * 24 23 21 52 52 H 1.09002 * 109.90933 * 273.87268 * 29 9 7 53 53 H 1.09004 * 109.91207 * 35.14732 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4509 0.4627 5 6 3.4620 1.1927 1.9699 6 6 1.8770 1.9938 -1.3293 7 6 2.1546 3.4721 -1.2370 8 8 2.4424 3.9697 -0.1691 9 7 2.0879 4.2405 -2.3423 10 6 1.7594 3.7987 -3.7174 11 6 2.7255 4.6227 -4.5994 12 1 3.7139 4.1637 -4.6219 13 6 2.1700 4.7779 -6.0166 14 6 2.7726 5.9889 -3.8771 15 1 2.0818 6.6893 -4.3464 16 7 4.1378 6.5309 -3.8946 17 6 4.1282 7.9881 -3.7084 18 6 5.5428 8.5070 -3.7326 19 8 6.4680 7.7385 -3.8899 20 7 5.7800 9.8248 -3.5793 21 6 7.0670 10.2968 -3.6008 22 1 7.8909 9.6125 -3.7409 23 6 7.3115 11.6555 -3.4434 24 7 6.3090 12.4880 -3.2734 25 14 9.0650 12.2986 -3.4733 26 1 9.6902 11.9708 -4.7797 27 1 9.0553 13.7716 -3.2845 28 1 9.8434 11.6648 -2.3790 29 6 2.3334 5.6921 -2.4312 30 1 -0.3633 0.4264 -0.9351 31 1 -0.3634 -1.0229 0.0982 32 1 -0.3634 0.5966 0.8367 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 4.0033 0.6954 -0.0551 36 1 3.8195 2.4394 0.2498 37 1 4.4971 1.2232 2.3099 38 1 2.8863 1.9591 2.4889 39 1 3.0377 0.2118 2.1846 40 1 0.8619 1.8367 -1.6938 41 1 2.5857 1.5333 -2.0177 42 1 1.9487 2.7317 -3.8341 43 1 0.7236 4.0356 -3.9603 44 1 2.8083 5.4545 -6.5849 45 1 2.1459 3.8042 -6.5060 46 1 1.1603 5.1855 -5.9684 47 1 4.6163 6.2784 -4.7463 48 1 3.5572 8.4532 -4.5120 49 1 3.6689 8.2289 -2.7497 50 1 5.0402 10.4392 -3.4531 51 1 6.4797 13.4365 -3.1631 52 1 1.4184 6.2381 -2.2016 53 1 3.1236 5.9782 -1.7370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215994029.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:52 Heat of formation + Delta-G solvation = -84.283917 kcal Electronic energy + Delta-G solvation = -30196.383682 eV Core-core repulsion = 26102.059350 eV Total energy + Delta-G solvation = -4094.324332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31983 -40.23387 -39.44368 -38.04199 -36.20872 -35.54060 -33.51111 -33.22576 -32.71354 -31.61787 -30.01005 -28.24708 -27.34567 -26.77811 -25.78828 -23.88460 -23.19580 -21.89234 -21.25913 -20.89277 -20.26310 -19.88010 -18.40560 -17.81597 -17.46160 -16.99063 -16.65316 -16.51522 -16.22314 -16.08137 -15.91676 -15.56219 -15.33378 -15.19589 -14.85249 -14.72311 -14.39117 -14.15861 -13.88960 -13.78050 -13.52171 -13.46017 -13.21824 -13.12131 -13.07790 -12.91400 -12.85944 -12.73012 -12.49236 -12.45691 -12.40843 -12.14957 -12.11102 -11.98446 -11.86212 -11.60255 -11.55129 -11.52451 -10.76600 -10.37552 -10.04087 -9.73933 -9.36637 -9.27868 -8.48445 -5.97480 1.38131 1.40061 1.51178 1.63977 1.86360 2.02542 2.27535 2.86896 2.93522 3.18550 3.35859 3.50099 3.53107 3.82374 4.00313 4.11751 4.12851 4.21468 4.22924 4.27033 4.28983 4.38167 4.42515 4.48352 4.54363 4.56050 4.57422 4.57708 4.61822 4.71902 4.74786 4.83133 4.86163 4.90930 4.96686 5.05224 5.12752 5.13757 5.22314 5.28118 5.31746 5.38539 5.42844 5.44453 5.88267 5.98071 6.09025 6.14785 6.38027 6.57565 6.58973 7.10145 7.21091 7.53523 8.08803 8.68663 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.002119 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.402841 B =13209.438284 C =14435.482658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.541 5.541 4 C 0.049 3.951 5 C -0.137 4.137 6 C 0.049 3.951 7 C 0.521 3.479 8 O -0.573 6.573 9 N -0.622 5.622 10 C 0.107 3.893 11 C -0.103 4.103 12 H 0.078 0.922 13 C -0.137 4.137 14 C 0.080 3.920 15 H 0.082 0.918 16 N -0.677 5.677 17 C 0.066 3.934 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.269 1.269 28 H -0.274 1.274 29 C 0.112 3.888 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.350 0.650 48 H 0.075 0.925 49 H 0.095 0.905 50 H 0.397 0.603 51 H 0.278 0.722 52 H 0.074 0.926 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.635 -24.249 -2.271 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 N -0.267 5.267 4 C -0.079 4.079 5 C -0.194 4.194 6 C -0.081 4.081 7 C 0.311 3.689 8 O -0.451 6.451 9 N -0.356 5.356 10 C -0.014 4.014 11 C -0.122 4.122 12 H 0.096 0.904 13 C -0.195 4.195 14 C -0.030 4.030 15 H 0.100 0.900 16 N -0.311 5.311 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.194 1.194 28 H -0.200 1.200 29 C -0.012 4.012 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.147 0.853 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.170 0.830 48 H 0.093 0.907 49 H 0.113 0.887 50 H 0.230 0.770 51 H 0.088 0.912 52 H 0.092 0.908 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.053 -24.212 -0.695 29.623 hybrid contribution 1.048 1.190 -0.963 1.855 sum -16.005 -23.022 -1.659 28.088 Atomic orbital electron populations 1.21765 0.93962 1.02330 1.02091 1.22246 0.96880 0.86824 1.01945 1.61697 1.21342 1.19483 1.24199 1.22102 0.88188 1.00528 0.97085 1.21667 1.01507 1.01726 0.94517 1.21968 1.04930 0.89243 0.91984 1.20890 0.76243 0.89708 0.82085 1.90694 1.49307 1.75634 1.29491 1.48858 1.68755 1.08882 1.09113 1.22813 0.99751 1.00607 0.78262 1.22392 1.00251 0.93622 0.95968 0.90408 1.21746 1.01460 1.03211 0.93080 1.22603 0.89095 0.97090 0.94193 0.89978 1.60082 1.16670 1.09534 1.44793 1.21574 0.92550 0.89387 1.03153 1.20881 0.92071 0.82293 0.82345 1.90488 1.47386 1.57017 1.56207 1.41928 1.08515 1.06692 1.63814 1.19627 0.85343 0.92497 1.49050 0.90385 1.26065 1.03652 0.95462 0.96174 1.69667 1.32785 1.04464 1.49075 0.84979 0.77048 0.77304 0.78947 1.19461 1.19356 1.19962 1.22056 0.99986 0.81623 0.97540 0.92280 0.90602 0.93282 0.93195 0.90091 0.94118 0.92779 0.92012 0.93764 0.91309 0.85336 0.90303 0.87681 0.87981 0.93046 0.90230 0.90774 0.82994 0.90741 0.88699 0.76958 0.91246 0.90780 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.94 71.98 0.72 -0.81 16 2 C 0.05 0.61 5.54 86.30 0.48 1.09 16 3 N -0.54 -10.62 4.13 -900.78 -3.72 -14.33 16 4 C 0.05 1.08 5.23 86.30 0.45 1.53 16 5 C -0.14 -2.75 10.00 71.98 0.72 -2.03 16 6 C 0.05 0.84 4.21 85.56 0.36 1.20 16 7 C 0.52 13.59 7.45 87.66 0.65 14.24 16 8 O -0.57 -20.94 14.82 -3.03 -0.04 -20.99 16 9 N -0.62 -13.75 3.29 -810.07 -2.67 -16.41 16 10 C 0.11 1.32 6.38 86.61 0.55 1.87 16 11 C -0.10 -1.60 3.11 -9.70 -0.03 -1.63 16 12 H 0.08 1.50 8.00 -2.39 -0.02 1.49 16 13 C -0.14 -1.44 9.16 71.98 0.66 -0.78 16 14 C 0.08 1.76 2.89 45.80 0.13 1.89 16 15 H 0.08 1.50 7.57 -2.39 -0.02 1.48 16 16 N -0.68 -21.25 5.80 -490.99 -2.85 -24.09 16 17 C 0.07 2.28 6.00 85.56 0.51 2.79 16 18 C 0.44 21.26 7.82 87.66 0.69 21.94 16 19 O -0.62 -35.43 15.78 -3.08 -0.05 -35.48 16 20 N -0.57 -30.03 5.29 -306.98 -1.62 -31.66 16 21 C -0.34 -19.46 9.68 84.04 0.81 -18.65 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 25 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 C 0.11 2.88 6.67 86.53 0.58 3.46 16 30 H 0.06 0.53 6.97 -2.38 -0.02 0.52 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.50 8.00 -2.39 -0.02 0.48 16 34 H 0.08 1.00 6.25 -2.38 -0.01 0.98 16 35 H 0.04 0.77 8.05 -2.39 -0.02 0.75 16 36 H 0.05 1.61 5.81 -2.39 -0.01 1.60 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.09 6.53 -2.39 -0.02 1.08 16 40 H 0.13 1.47 6.72 -2.39 -0.02 1.46 16 41 H 0.08 1.07 7.87 -2.39 -0.02 1.05 16 42 H 0.10 0.79 7.23 -2.39 -0.02 0.77 16 43 H 0.10 0.79 8.01 -2.39 -0.02 0.78 16 44 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.07 0.59 8.10 -2.39 -0.02 0.57 16 47 H 0.35 11.20 8.10 -89.69 -0.73 10.48 16 48 H 0.07 2.16 8.08 -2.38 -0.02 2.14 16 49 H 0.09 3.15 8.11 -2.39 -0.02 3.13 16 50 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 51 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 52 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 53 H 0.05 1.63 7.84 -2.38 -0.02 1.61 16 Total: -1.00 -78.67 420.19 -1.44 -80.11 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.55 Total: 41.32 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 7.75 Total: 25.85 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -10.57 Total: -136.53 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.09 Total: -56.46 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.67 -1.44 -80.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215994029.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.171 kcal (2) G-P(sol) polarization free energy of solvation -78.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds