Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.46899 * 111.00522 * 293.95683 * 3 2 1 5 5 C 1.46900 * 110.99986 * 170.00011 * 3 2 1 6 6 C 1.53000 * 109.47328 * 190.00394 * 5 3 2 7 7 C 1.50699 * 109.47467 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99883 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00270 * 180.02562 * 7 6 5 10 10 C 1.47486 * 127.03046 * 0.02562 * 9 7 6 11 11 C 1.54006 * 107.08066 * 154.51714 * 10 9 7 12 12 H 1.09003 * 110.32617 * 120.19994 * 11 10 9 13 13 C 1.53001 * 110.32599 * 242.30999 * 11 10 9 14 14 C 1.54617 * 105.04564 * 1.30802 * 11 10 9 15 15 H 1.08999 * 110.73767 * 263.51174 * 14 11 10 16 16 N 1.46903 * 110.74091 * 140.36707 * 14 11 10 17 17 C 1.46895 * 111.00099 * 154.99752 * 16 14 11 18 18 C 1.50699 * 109.47109 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99809 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99786 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99760 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00455 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99961 * 180.02562 * 21 20 18 24 24 N 1.31419 * 120.00033 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46961 * 90.00580 * 25 23 21 27 27 H 1.48493 * 109.47218 * 210.00208 * 25 23 21 28 28 H 1.48494 * 109.47250 * 330.00783 * 25 23 21 29 29 C 1.48116 * 127.03500 * 179.70496 * 9 7 6 30 30 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 35 35 H 1.08999 * 109.47073 * 59.99588 * 4 3 2 36 36 H 1.08991 * 109.47368 * 179.97438 * 4 3 2 37 37 H 1.08996 * 109.46525 * 299.99957 * 4 3 2 38 38 H 1.09008 * 109.47398 * 310.00374 * 5 3 2 39 39 H 1.08997 * 109.47054 * 70.00472 * 5 3 2 40 40 H 1.09001 * 109.47024 * 299.99970 * 6 5 3 41 41 H 1.09006 * 109.47082 * 60.00088 * 6 5 3 42 42 H 1.09000 * 109.91398 * 273.87638 * 10 9 7 43 43 H 1.09003 * 109.91455 * 34.96743 * 10 9 7 44 44 H 1.08997 * 109.47284 * 58.54899 * 13 11 10 45 45 H 1.09001 * 109.46878 * 178.54806 * 13 11 10 46 46 H 1.09002 * 109.47047 * 298.54544 * 13 11 10 47 47 H 1.00899 * 110.99487 * 31.04283 * 16 14 11 48 48 H 1.09003 * 109.47105 * 300.00000 * 17 16 14 49 49 H 1.08999 * 109.46883 * 60.00031 * 17 16 14 50 50 H 0.97001 * 120.00454 * 359.97438 * 20 18 17 51 51 H 0.96994 * 119.99626 * 179.97438 * 24 23 21 52 52 H 1.08999 * 110.66239 * 337.77263 * 29 9 7 53 53 H 1.09003 * 110.65783 * 100.88516 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0671 -1.2532 5 6 3.4685 1.4311 0.2381 6 6 3.8999 2.8791 0.4792 7 6 5.3863 2.9266 0.7229 8 8 6.0365 1.9029 0.7059 9 7 5.9929 4.1064 0.9607 10 6 5.3576 5.4362 1.0180 11 6 6.2446 6.3231 1.9115 12 1 6.6028 7.1868 1.3512 13 6 5.4669 6.7782 3.1480 14 6 7.4306 5.4201 2.3224 15 1 7.2557 4.9753 3.3020 16 7 8.6888 6.1782 2.3146 17 6 9.6729 5.5745 3.2228 18 6 10.9478 6.3772 3.1876 19 8 11.0284 7.3563 2.4763 20 7 11.9979 6.0078 3.9474 21 6 13.1575 6.7384 3.9157 22 1 13.2298 7.6098 3.2817 23 6 14.2404 6.3572 4.6986 24 7 15.3518 7.0579 4.6687 25 14 14.1159 4.8498 5.7947 26 1 14.5578 3.6503 5.0388 27 1 14.9831 5.0312 6.9863 28 1 12.7077 4.6693 6.2301 29 6 7.4329 4.3320 1.2244 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 0.5865 2.0795 -1.3702 36 1 2.0441 3.0905 -1.2264 37 1 2.1202 1.5373 -2.0928 38 1 3.7122 0.8289 1.1134 39 1 3.9925 1.0360 -0.6321 40 1 3.6562 3.4813 -0.3960 41 1 3.3759 3.2743 1.3495 42 1 5.2963 5.8618 0.0165 43 1 4.3593 5.3525 1.4475 44 1 5.1257 5.9051 3.7043 45 1 6.1148 7.3829 3.7825 46 1 4.6061 7.3708 2.8381 47 1 8.5287 7.1469 2.5471 48 1 9.2749 5.5682 4.2376 49 1 9.8791 4.5518 2.9071 50 1 11.9330 5.2254 4.5171 51 1 16.1076 6.7920 5.2155 52 1 7.9046 3.4196 1.5892 53 1 7.9358 4.6943 0.3278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216217571.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -58.707298 kcal Electronic energy + Delta-G solvation = -29552.800913 eV Core-core repulsion = 25459.585666 eV Total energy + Delta-G solvation = -4093.215247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.46108 -38.87555 -38.27895 -37.71929 -34.84677 -33.87270 -32.81513 -32.57343 -31.65976 -30.17664 -28.93109 -27.25367 -26.67273 -26.30604 -24.17680 -23.17870 -22.02860 -21.18558 -20.50036 -19.54853 -19.26342 -18.29918 -17.55392 -16.78116 -16.32874 -15.94146 -15.81928 -15.51060 -15.26301 -15.03227 -14.82885 -14.63570 -14.23745 -14.05415 -13.88860 -13.54400 -13.46149 -13.33506 -13.10843 -12.92640 -12.67018 -12.49073 -12.44628 -12.34749 -12.22589 -12.13951 -12.01529 -11.75447 -11.69167 -11.33781 -11.31814 -11.28461 -11.22495 -11.11658 -10.78348 -10.59665 -10.04354 -9.98028 -9.57997 -8.94277 -8.80575 -8.61145 -8.25778 -8.18040 -6.31789 -3.83295 2.41631 2.62912 3.02533 3.07606 3.15475 3.48193 3.72269 4.00189 4.10209 4.14060 4.34306 4.44761 4.53322 4.56885 4.66247 4.73048 4.77451 4.81962 5.00368 5.05947 5.07635 5.09585 5.12033 5.14005 5.20022 5.21500 5.24878 5.35925 5.45165 5.48028 5.52781 5.55760 5.57666 5.58889 5.59506 5.71537 5.75483 5.77281 5.78812 5.84851 5.90774 5.94258 6.09196 6.57915 6.59533 7.03202 7.30874 7.48820 7.57205 7.93606 8.13439 8.58665 8.94023 9.41594 9.81186 10.81239 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.001797 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.435587 B =15580.096857 C =16387.349014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.070 3.930 6 C -0.132 4.132 7 C 0.533 3.467 8 O -0.543 6.543 9 N -0.622 5.622 10 C 0.108 3.892 11 C -0.110 4.110 12 H 0.099 0.901 13 C -0.146 4.146 14 C 0.077 3.923 15 H 0.059 0.941 16 N -0.656 5.656 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.113 3.887 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.356 0.644 48 H 0.046 0.954 49 H 0.088 0.912 50 H 0.371 0.629 51 H 0.273 0.727 52 H 0.081 0.919 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.220 -9.872 -6.548 33.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.269 5.269 4 C -0.132 4.132 5 C -0.058 4.058 6 C -0.172 4.172 7 C 0.321 3.679 8 O -0.420 6.420 9 N -0.356 5.356 10 C -0.015 4.015 11 C -0.130 4.130 12 H 0.117 0.883 13 C -0.203 4.203 14 C -0.035 4.035 15 H 0.077 0.923 16 N -0.290 5.290 17 C -0.086 4.086 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.010 4.010 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.177 0.823 48 H 0.064 0.936 49 H 0.106 0.894 50 H 0.203 0.797 51 H 0.084 0.916 52 H 0.100 0.900 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -30.620 -9.880 -7.157 32.961 hybrid contribution 0.219 -1.236 1.157 1.707 sum -30.401 -11.116 -6.001 32.921 Atomic orbital electron populations 1.21801 0.94724 1.01623 1.02480 1.22091 0.96136 0.88505 1.01056 1.62001 1.13773 1.16269 1.34903 1.22503 1.01710 0.99220 0.89737 1.21819 0.86600 0.95407 1.02021 1.21601 0.91876 0.99252 1.04455 1.20251 0.89737 0.81684 0.76181 1.90727 1.66951 1.32643 1.51675 1.48767 1.09907 1.06342 1.70626 1.22190 0.96888 0.82384 1.00080 1.22298 0.94996 0.98586 0.97104 0.88289 1.21887 1.00145 1.01392 0.96908 1.22600 0.88999 0.94219 0.97645 0.92263 1.59992 1.07501 1.06443 1.55033 1.21792 0.92800 0.99338 0.94686 1.19658 0.84839 0.87663 0.84269 1.90564 1.82865 1.28676 1.42574 1.42207 1.13315 1.27360 1.40026 1.19434 0.87880 1.10675 1.25453 0.86251 1.25037 0.95255 0.97978 0.97818 1.69623 1.03297 1.38928 1.40209 0.86676 0.78329 0.83320 0.81088 1.19553 1.20175 1.19540 1.22450 0.80793 0.98700 0.99048 0.91790 0.92264 0.92683 0.90621 0.94795 0.91040 0.91201 0.95526 0.89877 0.93842 0.88944 0.88077 0.91101 0.90519 0.92497 0.92004 0.92000 0.82317 0.93562 0.89405 0.79669 0.91601 0.90019 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.84 37.16 0.37 -0.40 16 2 C 0.05 0.32 5.68 -3.82 -0.02 0.30 16 3 N -0.54 -3.96 4.76 -242.92 -1.16 -5.12 16 4 C 0.02 0.10 9.13 60.06 0.55 0.65 16 5 C 0.07 0.59 4.25 -3.82 -0.02 0.58 16 6 C -0.13 -1.01 4.71 -27.88 -0.13 -1.15 16 7 C 0.53 6.02 7.89 -10.99 -0.09 5.93 16 8 O -0.54 -8.31 16.19 5.56 0.09 -8.22 16 9 N -0.62 -6.43 3.29 -169.98 -0.56 -6.99 16 10 C 0.11 0.80 6.42 -2.98 -0.02 0.78 16 11 C -0.11 -0.92 3.08 -89.24 -0.27 -1.19 16 12 H 0.10 0.85 7.94 -51.93 -0.41 0.44 16 13 C -0.15 -1.03 8.90 37.16 0.33 -0.70 16 14 C 0.08 0.85 2.92 -66.03 -0.19 0.66 16 15 H 0.06 0.66 7.55 -51.93 -0.39 0.27 16 16 N -0.66 -9.42 5.98 -106.22 -0.64 -10.06 16 17 C 0.05 0.75 6.03 -4.98 -0.03 0.72 16 18 C 0.45 10.05 7.82 -10.99 -0.09 9.97 16 19 O -0.56 -14.88 15.78 5.55 0.09 -14.79 16 20 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 21 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.16 5.50 -17.46 -0.10 1.06 16 24 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 25 Si 0.88 19.45 27.74 -169.99 -4.71 14.74 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 29 C 0.11 1.36 6.76 -2.32 -0.02 1.35 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.27 6.55 -51.93 -0.34 -0.07 16 33 H 0.08 0.49 7.93 -51.93 -0.41 0.08 16 34 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 35 H 0.07 0.36 6.47 -51.93 -0.34 0.03 16 36 H 0.07 0.36 6.30 -51.93 -0.33 0.03 16 37 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.08 0.79 7.89 -51.92 -0.41 0.38 16 39 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.09 0.58 6.47 -51.93 -0.34 0.24 16 41 H 0.10 0.67 7.91 -51.93 -0.41 0.26 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.43 7.08 -51.93 -0.37 0.06 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.36 5.18 8.04 -39.29 -0.32 4.86 16 48 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 49 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 51 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 52 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 53 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 419.59 15.07 6.32 6.32 Total: -1.00 -34.17 419.59 -9.05 -43.22 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -9.32 Total: 10.14 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 0.12 Total: 9.76 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -1.63 Total: -61.16 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.18 Total: -23.01 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.17 -9.05 -43.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216217571.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.486 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds