Wall clock time and date at job start Sat Apr 11 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.46899 * 111.00522 * 293.95683 * 3 2 1 5 5 C 1.46900 * 110.99986 * 170.00011 * 3 2 1 6 6 C 1.53000 * 109.47328 * 190.00394 * 5 3 2 7 7 C 1.50699 * 109.47467 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99883 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00270 * 180.02562 * 7 6 5 10 10 C 1.47486 * 127.03046 * 0.02562 * 9 7 6 11 11 C 1.54006 * 107.08066 * 154.51714 * 10 9 7 12 12 H 1.09003 * 110.32617 * 120.19994 * 11 10 9 13 13 C 1.53001 * 110.32599 * 242.30999 * 11 10 9 14 14 C 1.54617 * 105.04564 * 1.30802 * 11 10 9 15 15 H 1.08999 * 110.73767 * 263.51174 * 14 11 10 16 16 N 1.46903 * 110.74091 * 140.36707 * 14 11 10 17 17 C 1.46895 * 111.00099 * 154.99752 * 16 14 11 18 18 C 1.50699 * 109.47109 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99809 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99786 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99760 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00455 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99961 * 180.02562 * 21 20 18 24 24 N 1.31419 * 120.00033 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46961 * 90.00580 * 25 23 21 27 27 H 1.48493 * 109.47218 * 210.00208 * 25 23 21 28 28 H 1.48494 * 109.47250 * 330.00783 * 25 23 21 29 29 C 1.48116 * 127.03500 * 179.70496 * 9 7 6 30 30 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 35 35 H 1.08999 * 109.47073 * 59.99588 * 4 3 2 36 36 H 1.08991 * 109.47368 * 179.97438 * 4 3 2 37 37 H 1.08996 * 109.46525 * 299.99957 * 4 3 2 38 38 H 1.09008 * 109.47398 * 310.00374 * 5 3 2 39 39 H 1.08997 * 109.47054 * 70.00472 * 5 3 2 40 40 H 1.09001 * 109.47024 * 299.99970 * 6 5 3 41 41 H 1.09006 * 109.47082 * 60.00088 * 6 5 3 42 42 H 1.09000 * 109.91398 * 273.87638 * 10 9 7 43 43 H 1.09003 * 109.91455 * 34.96743 * 10 9 7 44 44 H 1.08997 * 109.47284 * 58.54899 * 13 11 10 45 45 H 1.09001 * 109.46878 * 178.54806 * 13 11 10 46 46 H 1.09002 * 109.47047 * 298.54544 * 13 11 10 47 47 H 1.00899 * 110.99487 * 31.04283 * 16 14 11 48 48 H 1.09003 * 109.47105 * 300.00000 * 17 16 14 49 49 H 1.08999 * 109.46883 * 60.00031 * 17 16 14 50 50 H 0.97001 * 120.00454 * 359.97438 * 20 18 17 51 51 H 0.96994 * 119.99626 * 179.97438 * 24 23 21 52 52 H 1.08999 * 110.66239 * 337.77263 * 29 9 7 53 53 H 1.09003 * 110.65783 * 100.88516 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0671 -1.2532 5 6 3.4685 1.4311 0.2381 6 6 3.8999 2.8791 0.4792 7 6 5.3863 2.9266 0.7229 8 8 6.0365 1.9029 0.7059 9 7 5.9929 4.1064 0.9607 10 6 5.3576 5.4362 1.0180 11 6 6.2446 6.3231 1.9115 12 1 6.6028 7.1868 1.3512 13 6 5.4669 6.7782 3.1480 14 6 7.4306 5.4201 2.3224 15 1 7.2557 4.9753 3.3020 16 7 8.6888 6.1782 2.3146 17 6 9.6729 5.5745 3.2228 18 6 10.9478 6.3772 3.1876 19 8 11.0284 7.3563 2.4763 20 7 11.9979 6.0078 3.9474 21 6 13.1575 6.7384 3.9157 22 1 13.2298 7.6098 3.2817 23 6 14.2404 6.3572 4.6986 24 7 15.3518 7.0579 4.6687 25 14 14.1159 4.8498 5.7947 26 1 14.5578 3.6503 5.0388 27 1 14.9831 5.0312 6.9863 28 1 12.7077 4.6693 6.2301 29 6 7.4329 4.3320 1.2244 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 0.5865 2.0795 -1.3702 36 1 2.0441 3.0905 -1.2264 37 1 2.1202 1.5373 -2.0928 38 1 3.7122 0.8289 1.1134 39 1 3.9925 1.0360 -0.6321 40 1 3.6562 3.4813 -0.3960 41 1 3.3759 3.2743 1.3495 42 1 5.2963 5.8618 0.0165 43 1 4.3593 5.3525 1.4475 44 1 5.1257 5.9051 3.7043 45 1 6.1148 7.3829 3.7825 46 1 4.6061 7.3708 2.8381 47 1 8.5287 7.1469 2.5471 48 1 9.2749 5.5682 4.2376 49 1 9.8791 4.5518 2.9071 50 1 11.9330 5.2254 4.5171 51 1 16.1076 6.7920 5.2155 52 1 7.9046 3.4196 1.5892 53 1 7.9358 4.6943 0.3278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216217571.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:54 Heat of formation + Delta-G solvation = -86.067631 kcal Electronic energy + Delta-G solvation = -29553.987346 eV Core-core repulsion = 25459.585666 eV Total energy + Delta-G solvation = -4094.401680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31172 -40.32321 -39.35667 -38.48275 -36.25253 -35.59932 -33.77897 -33.51446 -33.24989 -30.84654 -29.84270 -28.20953 -27.48166 -27.17600 -25.76265 -23.97966 -22.83247 -21.74088 -21.45021 -21.16265 -20.40034 -20.01649 -18.37669 -17.79771 -17.36932 -17.01740 -16.91889 -16.57433 -16.50182 -16.02531 -15.78985 -15.61502 -15.18995 -15.08264 -14.88251 -14.73703 -14.52074 -14.35579 -14.08002 -14.05138 -13.80686 -13.58785 -13.52008 -13.20890 -13.01795 -12.90293 -12.80502 -12.72597 -12.67303 -12.42319 -12.27638 -12.04682 -11.98144 -11.92205 -11.85316 -11.75572 -11.57702 -11.52850 -10.95208 -10.45227 -10.25808 -9.79492 -9.39849 -9.36987 -8.42383 -6.03080 1.29034 1.34495 1.42827 1.57255 1.82600 1.93610 2.21572 2.69379 2.93086 3.13926 3.32074 3.44306 3.62308 3.79836 3.89913 3.96286 4.09870 4.12213 4.15929 4.27962 4.30341 4.31779 4.41857 4.49147 4.51566 4.54625 4.56514 4.61595 4.63542 4.68188 4.77480 4.85474 4.89022 4.91845 4.95046 5.00579 5.02794 5.04740 5.11209 5.13773 5.26892 5.37560 5.38997 5.52199 5.89490 6.01439 6.01982 6.08175 6.33952 6.53197 6.58208 6.86686 7.09049 7.38321 7.94049 8.75093 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.001797 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.435587 B =15580.096857 C =16387.349014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.546 5.546 4 C 0.014 3.986 5 C 0.074 3.926 6 C -0.118 4.118 7 C 0.527 3.473 8 O -0.592 6.592 9 N -0.619 5.619 10 C 0.108 3.892 11 C -0.104 4.104 12 H 0.096 0.904 13 C -0.141 4.141 14 C 0.082 3.918 15 H 0.067 0.933 16 N -0.670 5.670 17 C 0.061 3.939 18 C 0.450 3.550 19 O -0.611 6.611 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.057 0.943 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.962 3.038 26 H -0.260 1.260 27 H -0.274 1.274 28 H -0.232 1.232 29 C 0.112 3.888 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.020 0.980 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.354 0.646 48 H 0.079 0.921 49 H 0.105 0.895 50 H 0.389 0.611 51 H 0.279 0.721 52 H 0.062 0.938 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.767 -11.221 -5.360 36.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.270 5.270 4 C -0.134 4.134 5 C -0.054 4.054 6 C -0.158 4.158 7 C 0.318 3.682 8 O -0.473 6.473 9 N -0.353 5.353 10 C -0.014 4.014 11 C -0.124 4.124 12 H 0.114 0.886 13 C -0.199 4.199 14 C -0.029 4.029 15 H 0.085 0.915 16 N -0.304 5.304 17 C -0.071 4.071 18 C 0.238 3.762 19 O -0.495 6.495 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.076 0.924 23 C -0.212 4.212 24 N -0.573 5.573 25 Si 0.782 3.218 26 H -0.185 1.185 27 H -0.199 1.199 28 H -0.155 1.155 29 C -0.012 4.012 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.175 0.825 48 H 0.097 0.903 49 H 0.123 0.877 50 H 0.224 0.776 51 H 0.089 0.911 52 H 0.081 0.919 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -34.221 -11.208 -5.976 36.502 hybrid contribution 1.314 -0.715 0.658 1.634 sum -32.906 -11.923 -5.318 35.401 Atomic orbital electron populations 1.21755 0.93448 1.02273 1.02540 1.22162 0.97155 0.88240 1.00681 1.62056 1.12570 1.16679 1.35705 1.22586 1.02443 0.99517 0.88832 1.21702 0.87371 0.95805 1.00572 1.21559 0.89051 0.98999 1.06160 1.20917 0.91014 0.81083 0.75187 1.90706 1.68235 1.34424 1.53919 1.48830 1.09240 1.07376 1.69833 1.22407 0.97656 0.80410 1.00973 1.22279 0.94067 0.98070 0.97960 0.88589 1.21862 1.00407 1.01643 0.95950 1.22582 0.88512 0.94195 0.97564 0.91518 1.59929 1.08914 1.06678 1.54894 1.21684 0.89812 0.98570 0.97067 1.20880 0.86160 0.87052 0.82085 1.90542 1.84002 1.30938 1.44030 1.42047 1.12387 1.27745 1.41126 1.19022 0.90625 1.10270 1.25909 0.92443 1.26073 0.93971 1.01975 0.99131 1.69799 1.04493 1.41505 1.41536 0.85401 0.80513 0.77664 0.78187 1.18451 1.19868 1.15521 1.22310 0.82032 0.98119 0.98772 0.92021 0.91403 0.92212 0.91036 0.95250 0.89954 0.90066 0.96111 0.91367 0.95768 0.86783 0.86056 0.89715 0.87619 0.92133 0.92897 0.90010 0.82510 0.90335 0.87682 0.77573 0.91137 0.91915 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.84 71.98 0.71 -0.52 16 2 C 0.05 0.54 5.68 86.30 0.49 1.03 16 3 N -0.55 -7.02 4.76 -922.47 -4.39 -11.41 16 4 C 0.01 0.13 9.13 127.69 1.17 1.30 16 5 C 0.07 1.19 4.25 86.30 0.37 1.56 16 6 C -0.12 -1.53 4.71 29.85 0.14 -1.39 16 7 C 0.53 11.24 7.89 87.66 0.69 11.93 16 8 O -0.59 -18.29 16.19 -3.04 -0.05 -18.34 16 9 N -0.62 -11.63 3.29 -810.09 -2.67 -14.30 16 10 C 0.11 1.22 6.42 86.53 0.56 1.78 16 11 C -0.10 -1.45 3.08 -9.90 -0.03 -1.48 16 12 H 0.10 1.44 7.94 -2.39 -0.02 1.42 16 13 C -0.14 -1.50 8.90 71.98 0.64 -0.86 16 14 C 0.08 1.66 2.92 46.00 0.13 1.80 16 15 H 0.07 1.29 7.55 -2.39 -0.02 1.27 16 16 N -0.67 -18.45 5.98 -489.96 -2.93 -21.39 16 17 C 0.06 1.85 6.03 85.56 0.52 2.37 16 18 C 0.45 20.17 7.82 87.66 0.69 20.85 16 19 O -0.61 -33.34 15.78 -3.06 -0.05 -33.39 16 20 N -0.59 -27.99 5.09 -306.98 -1.56 -29.56 16 21 C -0.33 -19.34 10.16 84.04 0.85 -18.48 16 22 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.93 -56.39 13.96 21.66 0.30 -56.08 16 25 Si 0.96 39.22 27.74 68.60 1.90 41.13 16 26 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 28 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 29 C 0.11 2.59 6.76 86.61 0.59 3.18 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.46 6.55 -2.38 -0.02 0.44 16 33 H 0.07 0.90 7.93 -2.39 -0.02 0.88 16 34 H 0.03 0.37 8.12 -2.39 -0.02 0.36 16 35 H 0.08 0.62 6.47 -2.39 -0.02 0.61 16 36 H 0.08 0.59 6.30 -2.39 -0.02 0.57 16 37 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.07 1.29 7.89 -2.38 -0.02 1.27 16 39 H 0.02 0.47 8.08 -2.39 -0.02 0.45 16 40 H 0.11 1.01 6.47 -2.39 -0.02 1.00 16 41 H 0.12 1.14 7.91 -2.38 -0.02 1.12 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 0.65 7.08 -2.39 -0.02 0.63 16 44 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.35 10.00 8.04 -89.69 -0.72 9.28 16 48 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 49 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 50 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 51 H 0.28 15.43 8.31 -92.71 -0.77 14.65 16 52 H 0.06 1.68 7.85 -2.39 -0.02 1.66 16 53 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -80.88 419.59 -1.89 -82.77 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.41 Total: 37.75 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.97 Total: 22.82 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -11.25 Total: -132.74 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.10 Total: -51.73 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.90 Total: 41.13 kcal Total: -80.88 -1.89 -82.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216217571.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.298 kcal (2) G-P(sol) polarization free energy of solvation -80.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds