Wall clock time and date at job start Sat Apr 11 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46903 * 109.46615 * 2 1 4 4 C 1.46901 * 111.00030 * 293.94646 * 3 2 1 5 5 C 1.46904 * 110.99171 * 169.99940 * 3 2 1 6 6 C 1.53006 * 109.46738 * 189.99973 * 5 3 2 7 7 C 1.50696 * 109.47119 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00098 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99810 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99826 * 179.97438 * 9 7 6 11 11 C 1.53119 * 109.51978 * 204.99618 * 10 9 7 12 12 C 1.53039 * 109.27478 * 182.37658 * 11 10 9 13 13 N 1.46852 * 109.52336 * 59.18093 * 12 11 10 14 14 C 1.46900 * 111.00118 * 174.15791 * 13 12 11 15 15 C 1.50697 * 109.47237 * 293.61170 * 14 13 12 16 16 O 1.21294 * 119.99957 * 353.73088 * 15 14 13 17 17 N 1.34777 * 120.00218 * 173.72893 * 15 14 13 18 18 C 1.37099 * 120.00043 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99929 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00132 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47281 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47325 * 120.00225 * 22 20 18 25 25 H 1.48503 * 109.47321 * 240.00026 * 22 20 18 26 26 C 1.46845 * 111.19897 * 298.25829 * 13 12 11 27 27 C 1.53038 * 109.52423 * 61.74130 * 26 13 12 28 28 H 1.09002 * 109.46842 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47031 * 300.00355 * 1 2 3 30 30 H 1.09009 * 109.46939 * 60.00621 * 1 2 3 31 31 H 1.08995 * 109.47031 * 239.99645 * 2 1 3 32 32 H 1.08996 * 109.46835 * 119.99734 * 2 1 3 33 33 H 1.09005 * 109.47275 * 296.05504 * 4 3 2 34 34 H 1.09000 * 109.46701 * 56.05145 * 4 3 2 35 35 H 1.08995 * 109.47048 * 176.05071 * 4 3 2 36 36 H 1.09001 * 109.47435 * 70.00165 * 5 3 2 37 37 H 1.09000 * 109.47089 * 309.99365 * 5 3 2 38 38 H 1.09000 * 109.47269 * 59.99447 * 6 5 3 39 39 H 1.09009 * 109.46915 * 299.99684 * 6 5 3 40 40 H 0.97000 * 120.00090 * 359.97438 * 9 7 6 41 41 H 1.08994 * 109.52080 * 325.12579 * 10 9 7 42 42 H 1.08998 * 109.50519 * 62.44346 * 11 10 9 43 43 H 1.08998 * 109.50523 * 302.31571 * 11 10 9 44 44 H 1.08994 * 109.46299 * 299.16822 * 12 11 10 45 45 H 1.09003 * 109.45395 * 179.18930 * 12 11 10 46 46 H 1.08996 * 109.46919 * 173.61386 * 14 13 12 47 47 H 1.08994 * 109.47139 * 53.61230 * 14 13 12 48 48 H 0.97002 * 119.99804 * 0.02562 * 17 15 14 49 49 H 0.96995 * 120.00108 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.46555 * 181.75400 * 26 13 12 51 51 H 1.09004 * 109.46392 * 301.72721 * 26 13 12 52 52 H 1.08998 * 109.50374 * 180.88473 * 27 26 13 53 53 H 1.09001 * 109.50604 * 60.76106 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6702 2.0669 -1.2534 5 6 3.4685 1.4311 0.2382 6 6 3.8999 2.8792 0.4792 7 6 5.3862 2.9266 0.7229 8 8 6.0365 1.9030 0.7060 9 7 5.9928 4.1064 0.9606 10 6 7.4377 4.1525 1.1981 11 6 7.7813 5.3959 2.0231 12 6 9.2975 5.4702 2.2174 13 7 9.9577 5.5323 0.9071 14 6 11.4038 5.7437 1.0557 15 6 11.6542 7.1099 1.6403 16 8 10.7305 7.8794 1.8011 17 7 12.9046 7.4768 1.9846 18 6 13.1325 8.7199 2.5160 19 1 12.3100 9.4050 2.6591 20 6 14.4217 9.0982 2.8704 21 7 15.4225 8.2647 2.6958 22 14 14.7321 10.7917 3.5950 23 1 13.4487 11.5328 3.6889 24 1 15.3214 10.6496 4.9507 25 1 15.6731 11.5387 2.7222 26 6 9.6807 4.3270 0.1153 27 6 8.1760 4.2186 -0.1418 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1770 1.5789 -2.0860 34 1 0.5920 2.0178 -1.4053 35 1 1.9824 3.1098 -1.1989 36 1 3.9926 1.0359 -0.6321 37 1 3.7121 0.8290 1.1135 38 1 3.3758 3.2744 1.3493 39 1 3.6562 3.4814 -0.3962 40 1 5.4727 4.9251 0.9745 41 1 7.7464 3.2588 1.7404 42 1 7.2925 5.3340 2.9954 43 1 7.4376 6.2872 1.4983 44 1 9.6386 4.5851 2.7543 45 1 9.5465 6.3622 2.7922 46 1 11.8835 5.6728 0.0796 47 1 11.8158 4.9835 1.7192 48 1 13.6434 6.8615 1.8557 49 1 16.3225 8.5289 2.9428 50 1 10.2081 4.3887 -0.8366 51 1 10.0200 3.4473 0.6621 52 1 7.9691 3.3156 -0.7161 53 1 7.8384 5.0914 -0.7006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229896063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:05 Heat of formation + Delta-G solvation = -96.573850 kcal Electronic energy + Delta-G solvation = -29401.616416 eV Core-core repulsion = 25306.759152 eV Total energy + Delta-G solvation = -4094.857264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.22533 -40.42152 -39.19647 -38.54421 -36.21493 -35.70639 -33.58472 -33.25875 -32.50152 -31.83848 -30.33764 -28.67634 -27.56937 -26.33898 -24.58305 -24.16429 -23.21729 -21.77284 -21.33098 -21.03057 -20.71095 -19.85494 -18.24523 -17.76238 -17.43438 -16.99564 -16.68102 -16.48647 -16.36988 -16.15266 -16.04382 -15.56041 -15.34742 -15.24982 -15.06245 -14.81771 -14.61814 -14.25369 -14.16583 -13.85983 -13.63415 -13.49093 -13.20143 -13.09279 -12.94611 -12.80355 -12.71889 -12.67969 -12.45561 -12.36750 -12.25521 -12.18901 -12.10237 -11.84855 -11.81788 -11.75100 -11.61737 -11.38986 -10.86092 -10.26028 -10.05341 -9.97422 -9.35629 -9.21101 -8.44873 -5.93229 1.37494 1.42708 1.56728 1.65396 2.07771 2.11409 2.29407 2.74968 3.00591 3.22303 3.39519 3.68874 3.83452 3.86872 3.95007 4.06185 4.13809 4.18091 4.19635 4.29846 4.31137 4.36715 4.46163 4.52323 4.55335 4.56107 4.58634 4.62050 4.63973 4.67248 4.71888 4.90081 4.91539 4.94740 4.97514 5.02212 5.03749 5.06075 5.12316 5.13937 5.30174 5.37358 5.43047 5.52016 5.89560 6.03442 6.09091 6.09454 6.21757 6.58821 6.62862 7.15236 7.27720 7.59120 8.14673 8.72884 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.041827 B = 0.001521 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.258008 B =18405.497849 C =18692.109464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.548 5.548 4 C 0.014 3.986 5 C 0.075 3.925 6 C -0.126 4.126 7 C 0.513 3.487 8 O -0.587 6.587 9 N -0.713 5.713 10 C 0.151 3.849 11 C -0.106 4.106 12 C 0.058 3.942 13 N -0.529 5.529 14 C 0.056 3.944 15 C 0.443 3.557 16 O -0.611 6.611 17 N -0.576 5.576 18 C -0.330 4.330 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.059 3.941 27 C -0.114 4.114 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.021 0.979 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.416 0.584 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.031 0.969 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.063 0.937 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.088 0.912 51 H 0.037 0.963 52 H 0.069 0.931 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.532 -14.813 -6.716 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.273 5.273 4 C -0.134 4.134 5 C -0.054 4.054 6 C -0.166 4.166 7 C 0.301 3.699 8 O -0.467 6.467 9 N -0.364 5.364 10 C 0.046 3.954 11 C -0.145 4.145 12 C -0.070 4.070 13 N -0.255 5.255 14 C -0.075 4.075 15 C 0.230 3.770 16 O -0.497 6.497 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.197 1.197 26 C -0.069 4.069 27 C -0.153 4.153 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.253 0.747 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.229 0.771 49 H 0.086 0.914 50 H 0.106 0.894 51 H 0.055 0.945 52 H 0.087 0.913 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.934 -14.365 -6.448 30.340 hybrid contribution 1.665 -0.268 0.105 1.690 sum -24.268 -14.633 -6.343 29.040 Atomic orbital electron populations 1.21767 0.93573 1.02268 1.02481 1.22152 0.97074 0.88297 1.00697 1.62062 1.12884 1.16647 1.35679 1.22585 1.02185 0.99710 0.88925 1.21705 0.87154 0.95938 1.00592 1.21594 0.89835 0.98967 1.06221 1.21145 0.91012 0.82805 0.74921 1.90695 1.68102 1.35054 1.52838 1.45998 1.08521 1.09948 1.71978 1.20858 0.80349 0.98303 0.95875 1.21697 0.94547 0.97512 1.00706 1.22037 0.94669 1.00249 0.90041 1.61512 1.08302 1.38250 1.17388 1.21731 0.90068 0.93398 1.02285 1.20717 0.82760 0.90421 0.83073 1.90470 1.43769 1.55693 1.59736 1.41957 1.07841 1.15486 1.56066 1.19705 0.94346 0.92813 1.39119 0.90190 1.26018 0.94442 1.03131 0.97690 1.69681 1.00588 1.37495 1.48578 0.84882 0.78193 0.77310 0.78021 1.19678 1.19751 1.19721 1.22121 0.96802 0.89696 0.98294 1.21845 0.93851 1.02284 0.97293 0.91351 0.92136 0.92230 0.95169 0.91031 0.96001 0.90118 0.90085 0.95567 0.91410 0.86295 0.86758 0.74740 0.91325 0.89773 0.90512 0.95053 0.91736 0.87147 0.91873 0.77146 0.91403 0.89353 0.94498 0.91263 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.84 71.98 0.71 -0.59 16 2 C 0.05 0.56 5.68 86.31 0.49 1.05 16 3 N -0.55 -7.25 4.76 -922.42 -4.39 -11.64 16 4 C 0.01 0.14 9.13 127.69 1.17 1.30 16 5 C 0.07 1.17 4.25 86.30 0.37 1.54 16 6 C -0.13 -1.56 5.62 29.85 0.17 -1.40 16 7 C 0.51 9.90 7.80 87.66 0.68 10.59 16 8 O -0.59 -16.51 15.64 -3.02 -0.05 -16.56 16 9 N -0.71 -12.03 5.08 -442.15 -2.25 -14.27 16 10 C 0.15 3.32 2.52 45.07 0.11 3.43 16 11 C -0.11 -2.54 5.57 30.65 0.17 -2.37 16 12 C 0.06 1.83 5.12 86.33 0.44 2.27 16 13 N -0.53 -16.95 4.35 -900.94 -3.92 -20.86 16 14 C 0.06 1.97 5.45 85.56 0.47 2.43 16 15 C 0.44 20.96 7.31 87.66 0.64 21.60 16 16 O -0.61 -33.14 14.29 -3.07 -0.04 -33.18 16 17 N -0.58 -29.52 5.29 -306.98 -1.62 -31.14 16 18 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 21 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 22 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 C 0.06 1.47 5.46 86.33 0.47 1.94 16 27 C -0.11 -2.57 5.68 30.65 0.17 -2.40 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.49 6.47 -2.38 -0.02 0.47 16 31 H 0.03 0.38 8.12 -2.39 -0.02 0.37 16 32 H 0.07 0.91 7.93 -2.39 -0.02 0.89 16 33 H 0.02 0.24 8.14 -2.38 -0.02 0.22 16 34 H 0.08 0.67 6.30 -2.39 -0.02 0.65 16 35 H 0.08 0.64 6.47 -2.39 -0.02 0.62 16 36 H 0.03 0.49 8.08 -2.39 -0.02 0.47 16 37 H 0.07 1.25 7.89 -2.39 -0.02 1.23 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 0.97 6.55 -2.38 -0.02 0.95 16 40 H 0.42 4.67 8.61 -92.71 -0.80 3.87 16 41 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 2.53 6.06 -2.39 -0.01 2.52 16 46 H 0.11 3.40 7.98 -2.39 -0.02 3.38 16 47 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 48 H 0.39 19.35 7.90 -92.71 -0.73 18.62 16 49 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 50 H 0.09 2.01 8.01 -2.39 -0.02 2.00 16 51 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -71.29 416.87 -3.24 -74.53 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -0.62 Total: 36.55 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 7.34 Total: 21.29 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -11.90 Total: -127.54 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.09 Total: -49.74 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -71.29 -3.24 -74.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229896063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.045 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds