Wall clock time and date at job start Sat Apr 11 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.06425 * 2 1 4 4 C 1.53988 * 109.91869 * 238.79266 * 2 1 3 5 5 H 1.08997 * 110.30974 * 358.43339 * 4 2 1 6 6 N 1.46496 * 110.31106 * 120.50580 * 4 2 1 7 7 C 1.34777 * 120.00271 * 205.00249 * 6 4 2 8 8 O 1.21278 * 119.99854 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00161 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99947 * 66.04655 * 12 11 10 14 14 C 1.46898 * 111.00516 * 189.99788 * 12 11 10 15 15 C 1.54599 * 105.14102 * 239.42032 * 4 2 1 16 16 C 1.54942 * 102.92045 * 338.04290 * 15 4 2 17 17 N 1.47902 * 109.91713 * 121.20117 * 2 1 3 18 18 C 1.46906 * 111.00026 * 265.20011 * 17 2 1 19 19 C 1.50693 * 109.47188 * 170.00207 * 18 17 2 20 20 O 1.21299 * 120.00136 * 359.97438 * 19 18 17 21 21 N 1.34782 * 120.00034 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00037 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99959 * 359.97438 * 22 21 19 24 24 C 1.38946 * 119.99937 * 179.97438 * 22 21 19 25 25 N 1.31420 * 120.00023 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00264 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46905 * 89.99768 * 26 24 22 28 28 H 1.48494 * 109.47607 * 210.00237 * 26 24 22 29 29 H 1.48505 * 109.46949 * 330.00103 * 26 24 22 30 30 H 1.09005 * 109.46908 * 181.20649 * 1 2 3 31 31 H 1.08999 * 109.47222 * 301.20453 * 1 2 3 32 32 H 1.09001 * 109.47265 * 61.20829 * 1 2 3 33 33 H 0.97005 * 120.00266 * 24.99666 * 6 4 2 34 34 H 1.09001 * 109.46980 * 59.99654 * 9 7 6 35 35 H 1.08992 * 109.47158 * 299.99760 * 9 7 6 36 36 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 37 37 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 38 38 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 39 39 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 40 40 H 1.08997 * 109.47044 * 59.99771 * 13 12 11 41 41 H 1.09001 * 109.47499 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47124 * 299.99969 * 13 12 11 43 43 H 1.09002 * 109.46576 * 60.00106 * 14 12 11 44 44 H 1.09002 * 109.47680 * 179.97438 * 14 12 11 45 45 H 1.08997 * 109.47173 * 300.00378 * 14 12 11 46 46 H 1.08998 * 110.72241 * 96.39630 * 15 4 2 47 47 H 1.08995 * 110.72559 * 219.68811 * 15 4 2 48 48 H 1.09000 * 110.66479 * 278.98055 * 16 15 4 49 49 H 1.08998 * 110.81203 * 155.91162 * 16 15 4 50 50 H 1.09005 * 109.47080 * 290.00192 * 18 17 2 51 51 H 1.08995 * 109.47202 * 49.99810 * 18 17 2 52 52 H 0.97000 * 119.99841 * 359.97438 * 21 19 18 53 53 H 0.96998 * 119.99529 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 1.2228 -1.1387 -1.8258 6 7 2.8835 0.1377 -2.0573 7 6 3.0280 -0.1015 -3.3758 8 8 2.4721 -1.0520 -3.8841 9 6 3.8803 0.8122 -4.2184 10 6 3.8767 0.3204 -5.6672 11 6 4.7414 1.2484 -6.5228 12 7 4.7376 0.7767 -7.9140 13 6 3.3996 0.8998 -8.5079 14 6 5.7375 1.4942 -8.7160 15 6 2.9059 -1.9117 -0.6761 16 6 3.2681 -1.4184 0.7474 17 7 2.0338 -0.7204 1.1894 18 6 2.3210 0.2125 2.2874 19 6 2.5937 -0.5653 3.5489 20 8 2.5523 -1.7775 3.5350 21 7 2.8825 0.0860 4.6930 22 6 3.1301 -0.6216 5.8409 23 1 3.0932 -1.7009 5.8285 24 6 3.4284 0.0499 7.0202 25 7 3.6662 -0.6284 8.1205 26 14 3.4928 1.9166 7.0416 27 1 2.1475 2.4546 7.3671 28 1 4.4674 2.3667 8.0675 29 1 3.9146 2.4126 5.7069 30 1 -0.3633 -1.0275 0.0216 31 1 -0.3633 0.5324 0.8790 32 1 -0.3634 0.4949 -0.9006 33 1 3.3284 0.8978 -1.6507 34 1 4.9014 0.8106 -3.8370 35 1 3.4785 1.8245 -4.1769 36 1 4.2787 -0.6919 -5.7084 37 1 2.8557 0.3217 -6.0488 38 1 4.3390 2.2605 -6.4816 39 1 5.7625 1.2476 -6.1414 40 1 3.0899 1.9447 -8.4922 41 1 3.4249 0.5433 -9.5376 42 1 2.6911 0.3022 -7.9343 43 1 6.7286 1.3288 -8.2936 44 1 5.7137 1.1252 -9.7414 45 1 5.5124 2.5607 -8.7079 46 1 2.3214 -2.8305 -0.6287 47 1 3.8053 -2.0557 -1.2748 48 1 4.1097 -0.7266 0.7122 49 1 3.4904 -2.2596 1.4039 50 1 3.1950 0.8130 2.0347 51 1 1.4631 0.8667 2.4421 52 1 2.9153 1.0554 4.7042 53 1 3.8747 -0.1596 8.9436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264716677.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:16 Heat of formation + Delta-G solvation = -88.578041 kcal Electronic energy + Delta-G solvation = -29628.950920 eV Core-core repulsion = 25534.440381 eV Total energy + Delta-G solvation = -4094.510540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38998 -40.40091 -39.32572 -38.48789 -36.03273 -35.29471 -34.21331 -33.73584 -32.30145 -32.20110 -28.84720 -28.46415 -27.97954 -26.22883 -25.64522 -24.15535 -22.59682 -21.71020 -21.47540 -21.24045 -20.83923 -20.18511 -18.10008 -17.76970 -17.47567 -16.99872 -16.72836 -16.45405 -16.31682 -16.22983 -15.85175 -15.57290 -15.54253 -15.11422 -15.03207 -14.64439 -14.55911 -14.38877 -14.16228 -13.83681 -13.61075 -13.29093 -13.18541 -13.00297 -12.96802 -12.84232 -12.72972 -12.59035 -12.43600 -12.38311 -12.33967 -12.26770 -12.20748 -12.11830 -11.95899 -11.74227 -11.53307 -11.47326 -10.85276 -10.39240 -10.22050 -10.07060 -9.32429 -9.28763 -8.39294 -6.00176 1.30548 1.37303 1.45795 1.68466 1.99575 2.12147 2.24784 2.66415 3.06403 3.16155 3.23505 3.46472 3.70792 3.78941 4.00241 4.02747 4.12986 4.17479 4.21980 4.26470 4.31317 4.37283 4.42456 4.45524 4.48776 4.52441 4.57282 4.67315 4.69699 4.74295 4.76941 4.80879 4.83146 4.92350 5.02443 5.03208 5.03811 5.05400 5.12603 5.21107 5.36343 5.39117 5.49997 5.55368 5.88917 5.96300 6.08390 6.09331 6.13325 6.58072 6.62469 6.91348 7.30624 7.42773 8.01386 8.78584 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.001764 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.211801 B =15866.703335 C =16418.848679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 H 0.087 0.913 4 C 0.147 3.853 5 H 0.088 0.912 6 N -0.712 5.712 7 C 0.510 3.490 8 O -0.585 6.585 9 C -0.130 4.130 10 C -0.096 4.096 11 C 0.058 3.942 12 N -0.570 5.570 13 C 0.021 3.979 14 C 0.024 3.976 15 C -0.124 4.124 16 C 0.044 3.956 17 N -0.513 5.513 18 C 0.047 3.953 19 C 0.452 3.548 20 O -0.608 6.608 21 N -0.593 5.593 22 C -0.327 4.327 23 H 0.052 0.948 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.258 1.258 28 H -0.277 1.277 29 H -0.228 1.228 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.030 0.970 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.121 0.879 52 H 0.389 0.611 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 15.733 -31.645 35.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.045 4.045 3 H 0.105 0.895 4 C 0.041 3.959 5 H 0.106 0.894 6 N -0.365 5.365 7 C 0.299 3.701 8 O -0.464 6.464 9 C -0.170 4.170 10 C -0.135 4.135 11 C -0.070 4.070 12 N -0.294 5.294 13 C -0.127 4.127 14 C -0.124 4.124 15 C -0.163 4.163 16 C -0.083 4.083 17 N -0.238 5.238 18 C -0.084 4.084 19 C 0.240 3.760 20 O -0.491 6.491 21 N -0.235 5.235 22 C -0.456 4.456 23 H 0.071 0.929 24 C -0.215 4.215 25 N -0.578 5.578 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.151 1.151 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.104 0.896 51 H 0.139 0.861 52 H 0.225 0.775 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.839 13.381 -31.613 34.339 hybrid contribution 0.622 1.740 0.914 2.061 sum 1.461 15.121 -30.699 34.252 Atomic orbital electron populations 1.21731 0.92709 1.02208 1.02402 1.22677 0.97288 0.96992 0.87560 0.89482 1.21623 0.93352 0.89894 0.91067 0.89385 1.46077 1.50935 1.31217 1.08252 1.21328 0.80916 0.85496 0.82362 1.90714 1.49849 1.32587 1.73292 1.21644 1.01429 0.99792 0.94127 1.21233 1.00053 0.99327 0.92846 1.22145 1.00903 0.96281 0.87647 1.61935 1.06851 1.57613 1.03030 1.22437 0.89981 0.99932 1.00350 1.22407 0.95662 0.95955 0.98329 1.22802 1.00275 0.98533 0.94682 1.23141 0.91091 0.98581 0.95501 1.64334 1.27979 1.25904 1.05597 1.22024 1.03532 0.93839 0.89009 1.20916 0.81100 0.88482 0.85548 1.90551 1.56062 1.16487 1.86028 1.42015 1.64863 1.08346 1.08297 1.18984 1.46812 0.92583 0.87257 0.92946 1.26134 0.96016 1.05637 0.93714 1.69820 1.47838 1.38940 1.01182 0.85348 0.79478 0.76201 0.80358 1.18222 1.20197 1.15134 0.93296 0.91955 0.90496 0.74812 0.86432 0.86130 0.92803 0.92609 0.93658 0.89703 0.95057 0.91018 0.91770 0.90846 0.91049 0.95113 0.91433 0.90445 0.92671 0.92618 0.89572 0.86144 0.77503 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.32 71.98 0.67 -1.86 16 2 C 0.06 1.24 2.83 45.06 0.13 1.36 16 3 H 0.09 1.20 7.26 -2.39 -0.02 1.18 16 4 C 0.15 2.98 2.98 45.87 0.14 3.11 16 5 H 0.09 2.09 7.10 -2.39 -0.02 2.07 16 6 N -0.71 -10.26 5.06 -438.39 -2.22 -12.47 16 7 C 0.51 8.90 7.83 87.66 0.69 9.59 16 8 O -0.58 -16.06 15.63 -3.02 -0.05 -16.11 16 9 C -0.13 -1.20 5.70 29.85 0.17 -1.03 16 10 C -0.10 -1.31 4.43 30.59 0.14 -1.17 16 11 C 0.06 0.60 4.96 86.30 0.43 1.03 16 12 N -0.57 -7.47 5.02 -948.87 -4.76 -12.23 16 13 C 0.02 0.25 9.32 127.69 1.19 1.44 16 14 C 0.02 0.23 9.57 127.69 1.22 1.45 16 15 C -0.12 -3.08 6.78 31.80 0.22 -2.87 16 16 C 0.04 1.30 5.94 86.65 0.51 1.81 16 17 N -0.51 -14.72 4.54 -862.62 -3.91 -18.63 16 18 C 0.05 1.36 5.19 85.55 0.44 1.81 16 19 C 0.45 20.04 7.61 87.65 0.67 20.70 16 20 O -0.61 -33.69 14.64 -3.09 -0.05 -33.73 16 21 N -0.59 -27.43 5.09 -306.98 -1.56 -28.99 16 22 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 23 H 0.05 3.68 7.39 -2.91 -0.02 3.65 16 24 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 25 N -0.94 -56.51 13.96 21.66 0.30 -56.21 16 26 Si 0.97 38.02 27.73 68.60 1.90 39.92 16 27 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 28 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 29 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 30 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.41 3.34 8.33 -92.70 -0.77 2.57 16 34 H 0.12 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.06 0.93 6.51 -2.39 -0.02 0.91 16 38 H 0.05 0.38 8.12 -2.39 -0.02 0.36 16 39 H 0.08 0.72 8.06 -2.39 -0.02 0.70 16 40 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 42 H 0.06 0.87 6.47 -2.39 -0.02 0.86 16 43 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 44 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 45 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 1.83 8.05 -2.39 -0.02 1.82 16 48 H 0.06 1.39 7.81 -2.39 -0.02 1.37 16 49 H 0.06 2.13 7.10 -2.39 -0.02 2.11 16 50 H 0.09 1.92 7.83 -2.38 -0.02 1.90 16 51 H 0.12 2.79 8.08 -2.39 -0.02 2.77 16 52 H 0.39 14.65 5.76 -92.71 -0.53 14.11 16 53 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -84.03 420.30 -2.88 -86.91 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.47 Total: 34.87 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 7.93 Total: 16.68 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -12.15 Total: -128.54 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.09 Total: -49.84 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.92 kcal Total: -84.03 -2.88 -86.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264716677.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.664 kcal (2) G-P(sol) polarization free energy of solvation -84.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds