Wall clock time and date at job start Sat Apr 11 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.46774 * 2 1 4 4 C 1.47011 * 111.00289 * 46.36672 * 3 2 1 5 5 C 1.53089 * 109.25961 * 182.39403 * 4 3 2 6 6 O 1.43020 * 109.25898 * 303.14883 * 5 4 3 7 7 C 1.43019 * 113.73802 * 58.66934 * 6 5 4 8 8 H 1.08998 * 109.54261 * 61.28752 * 7 6 5 9 9 C 1.50704 * 109.50482 * 181.40025 * 7 6 5 10 10 O 1.21274 * 120.00039 * 4.78032 * 9 7 6 11 11 N 1.34772 * 119.99366 * 184.78414 * 9 7 6 12 12 C 1.46509 * 119.99616 * 180.27295 * 11 9 7 13 13 C 1.52996 * 109.47092 * 179.72552 * 12 11 9 14 14 N 1.46897 * 109.47007 * 180.02562 * 13 12 11 15 15 C 1.46900 * 110.99941 * 294.29706 * 14 13 12 16 16 C 1.53243 * 109.33563 * 172.74734 * 15 14 13 17 17 N 1.47074 * 108.52251 * 53.83609 * 16 15 14 18 18 C 1.36932 * 120.88304 * 128.79256 * 17 16 15 19 19 H 1.08003 * 120.00307 * 206.93274 * 18 17 16 20 20 C 1.38820 * 120.00103 * 26.93135 * 18 17 16 21 21 N 1.31618 * 119.99941 * 17.12143 * 20 18 17 22 22 Si 1.86797 * 119.99810 * 197.12264 * 20 18 17 23 23 H 1.48501 * 109.47229 * 94.12944 * 22 20 18 24 24 H 1.48504 * 109.46905 * 214.12524 * 22 20 18 25 25 H 1.48498 * 109.47516 * 334.12293 * 22 20 18 26 26 C 1.47075 * 118.23464 * 308.80907 * 17 16 15 27 27 C 1.46903 * 111.00007 * 169.99761 * 14 13 12 28 28 C 1.47013 * 110.99750 * 169.99690 * 3 2 1 29 29 H 1.09004 * 109.47343 * 299.99597 * 1 2 3 30 30 H 1.08996 * 109.47315 * 60.00100 * 1 2 3 31 31 H 1.09000 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47622 * 240.00174 * 2 1 3 33 33 H 1.09004 * 109.47301 * 119.99592 * 2 1 3 34 34 H 1.09001 * 109.50546 * 302.32880 * 4 3 2 35 35 H 1.09000 * 109.51062 * 62.45419 * 4 3 2 36 36 H 1.08997 * 109.51228 * 63.08023 * 5 4 3 37 37 H 1.09000 * 109.50852 * 183.17258 * 5 4 3 38 38 H 0.97001 * 120.00725 * 359.97438 * 11 9 7 39 39 H 1.09001 * 109.46837 * 299.72271 * 12 11 9 40 40 H 1.08999 * 109.47138 * 59.72321 * 12 11 9 41 41 H 1.09003 * 109.47344 * 300.00038 * 13 12 11 42 42 H 1.08999 * 109.47317 * 59.99879 * 13 12 11 43 43 H 1.08993 * 109.49215 * 292.70843 * 15 14 13 44 44 H 1.09000 * 109.48994 * 52.78859 * 15 14 13 45 45 H 1.08999 * 109.63066 * 294.11934 * 16 15 14 46 46 H 1.09007 * 109.62438 * 173.54311 * 16 15 14 47 47 H 0.96995 * 119.99903 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.63071 * 291.47310 * 26 17 16 49 49 H 1.09002 * 109.62841 * 170.89991 * 26 17 16 50 50 H 1.09001 * 109.49502 * 307.21298 * 27 14 13 51 51 H 1.09003 * 109.49169 * 67.28980 * 27 14 13 52 52 H 1.09004 * 109.50353 * 57.67810 * 28 3 2 53 53 H 1.08998 * 109.51116 * 297.54137 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.3023 2.1975 0.9933 5 6 1.8007 3.6430 0.9183 6 8 3.2162 3.6651 1.1212 7 6 3.9463 2.8846 0.1709 8 1 3.7757 3.2774 -0.8315 9 6 5.4173 2.9470 0.4924 10 8 5.7960 3.5232 1.4901 11 7 6.3119 2.3627 -0.3290 12 6 7.7415 2.4182 -0.0133 13 6 8.5316 1.6779 -1.0943 14 7 9.9649 1.7331 -0.7774 15 6 10.4673 3.1117 -0.8496 16 6 11.9118 3.1526 -0.3396 17 7 12.7003 2.1633 -1.0896 18 6 13.8799 2.5140 -1.6902 19 1 14.2264 1.9718 -2.5576 20 6 14.6305 3.5664 -1.1841 21 7 14.4078 4.0065 0.0362 22 14 15.9565 4.3580 -2.2350 23 1 15.3927 5.5391 -2.9366 24 1 17.0835 4.7882 -1.3688 25 1 16.4477 3.3761 -3.2349 26 6 12.1881 0.7875 -1.1778 27 6 10.7328 0.8395 -1.6548 28 6 3.4695 1.4313 0.2384 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.2332 2.1697 0.7827 35 1 1.4876 1.7999 1.9912 36 1 1.5671 4.0582 -0.0621 37 1 1.3123 4.2370 1.6909 38 1 6.0090 1.9016 -1.1268 39 1 8.0649 3.4584 0.0249 40 1 7.9187 1.9468 0.9534 41 1 8.2081 0.6377 -1.1326 42 1 8.3543 2.1493 -2.0609 43 1 10.4366 3.4563 -1.8832 44 1 9.8447 3.7585 -0.2314 45 1 11.9322 2.9082 0.7224 46 1 12.3276 4.1479 -0.4972 47 1 14.9325 4.7416 0.3900 48 1 12.2351 0.3156 -0.1964 49 1 12.7866 0.2189 -1.8896 50 1 10.3028 -0.1615 -1.6207 51 1 10.6983 1.2158 -2.6773 52 1 3.9825 0.8443 -0.5235 53 1 3.6896 1.0214 1.2241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266296732.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:24 Heat of formation + Delta-G solvation = -58.176804 kcal Electronic energy + Delta-G solvation = -30153.948479 eV Core-core repulsion = 26060.756236 eV Total energy + Delta-G solvation = -4093.192243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.50196 -40.10787 -39.57632 -37.29566 -36.79866 -35.49189 -33.48581 -32.79634 -31.68477 -31.65175 -30.32443 -28.35480 -27.23067 -25.44644 -24.97307 -24.28767 -23.64137 -22.60222 -21.62926 -21.31283 -20.81672 -18.77451 -18.53200 -17.93186 -17.21586 -17.07845 -16.88636 -16.56266 -16.25868 -16.17921 -15.90364 -15.74977 -15.52273 -15.32375 -15.21911 -15.01363 -14.87053 -14.61900 -14.51298 -14.08453 -13.94160 -13.22442 -13.16549 -13.01053 -12.85788 -12.83184 -12.72566 -12.63317 -12.56505 -12.35864 -12.21791 -12.03524 -11.85882 -11.83666 -11.79926 -11.55699 -11.42127 -10.91889 -10.76463 -10.59746 -10.19468 -9.49090 -9.29747 -8.68776 -7.87897 -5.33119 1.42588 1.46250 1.47344 1.56987 1.67507 2.50432 2.65069 2.86905 3.17539 3.27841 3.60703 3.67224 3.69942 3.85857 3.88477 3.96296 4.05885 4.07969 4.22110 4.29537 4.30198 4.35407 4.44742 4.46656 4.48421 4.55347 4.59039 4.63378 4.65483 4.71631 4.73703 4.82281 4.87663 4.92431 4.99255 4.99933 5.04768 5.10844 5.20596 5.28791 5.29860 5.37385 5.61208 5.67054 5.81637 5.90923 5.98524 6.14018 6.23445 6.36931 6.46930 7.12522 7.13608 7.83740 8.38117 9.19038 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026740 B = 0.001801 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.885418 B =15543.785307 C =16245.857218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 N -0.536 5.536 4 C 0.010 3.990 5 C 0.057 3.943 6 O -0.393 6.393 7 C 0.085 3.915 8 H 0.116 0.884 9 C 0.516 3.484 10 O -0.572 6.572 11 N -0.704 5.704 12 C 0.130 3.870 13 C 0.055 3.945 14 N -0.544 5.544 15 C 0.050 3.950 16 C 0.184 3.816 17 N -0.614 5.614 18 C -0.263 4.263 19 H 0.071 0.929 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.141 3.859 27 C 0.059 3.941 28 C 0.035 3.965 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.030 0.970 34 H 0.116 0.884 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.420 0.580 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.074 0.926 45 H -0.005 1.005 46 H 0.054 0.946 47 H 0.249 0.751 48 H 0.014 0.986 49 H 0.063 0.937 50 H 0.102 0.898 51 H 0.030 0.970 52 H 0.117 0.883 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.227 -9.011 -5.018 33.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.080 4.080 3 N -0.261 5.261 4 C -0.117 4.117 5 C -0.019 4.019 6 O -0.311 6.311 7 C 0.023 3.977 8 H 0.133 0.867 9 C 0.302 3.698 10 O -0.450 6.450 11 N -0.359 5.359 12 C 0.005 3.995 13 C -0.073 4.073 14 N -0.269 5.269 15 C -0.080 4.080 16 C 0.058 3.942 17 N -0.338 5.338 18 C -0.393 4.393 19 H 0.088 0.912 20 C -0.249 4.249 21 N -0.584 5.584 22 Si 0.798 3.202 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.190 1.190 26 C 0.015 3.985 27 C -0.070 4.070 28 C -0.094 4.094 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.134 0.866 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.013 0.987 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.032 0.968 49 H 0.082 0.918 50 H 0.120 0.880 51 H 0.048 0.952 52 H 0.135 0.865 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -31.798 -8.377 -4.079 33.135 hybrid contribution 1.065 0.422 -0.311 1.187 sum -30.733 -7.955 -4.390 32.047 Atomic orbital electron populations 1.21909 0.93629 1.02914 1.02617 1.22225 0.96909 0.87414 1.01471 1.62381 1.02486 1.12549 1.48723 1.22975 1.01086 0.93965 0.93710 1.22999 0.79068 0.96247 1.03613 1.88103 1.19794 1.69711 1.53522 1.21945 0.87638 0.93095 0.94978 0.86677 1.20624 0.88424 0.78052 0.82720 1.90741 1.81410 1.44073 1.28767 1.45597 1.06034 1.56566 1.27667 1.21154 0.79000 1.00298 0.99010 1.22188 0.87118 1.02078 0.95897 1.61744 1.02615 1.08172 1.54381 1.22605 0.97098 0.89591 0.98659 1.20596 0.87806 0.93641 0.92147 1.44405 1.22149 1.05416 1.61847 1.19572 0.98015 1.15068 1.06622 0.91168 1.25845 1.00461 1.02191 0.96437 1.70204 1.43750 1.29171 1.15233 0.85217 0.78337 0.78624 0.78060 1.21358 1.22294 1.18977 1.21181 0.93249 0.86090 0.97960 1.22472 0.94178 0.97031 0.93345 1.22635 0.90299 0.94693 1.01749 0.92281 0.91457 0.90987 0.89196 0.95147 0.86617 0.94910 0.90795 0.86712 0.74232 0.93190 0.92176 0.87584 0.93227 0.95733 0.90781 0.98676 0.92789 0.94146 0.96769 0.91814 0.87958 0.95201 0.86499 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.18 71.98 0.66 -0.27 16 2 C 0.05 0.41 6.00 86.30 0.52 0.93 16 3 N -0.54 -6.20 4.88 -895.22 -4.37 -10.56 16 4 C 0.01 0.12 4.94 86.31 0.43 0.55 16 5 C 0.06 0.78 7.01 72.01 0.50 1.29 16 6 O -0.39 -9.04 10.01 -130.02 -1.30 -10.34 16 7 C 0.08 1.54 3.22 29.88 0.10 1.63 16 8 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 9 C 0.52 12.78 7.18 87.66 0.63 13.41 16 10 O -0.57 -20.99 16.51 15.95 0.26 -20.73 16 11 N -0.70 -13.12 5.52 -463.06 -2.56 -15.67 16 12 C 0.13 3.22 5.60 86.38 0.48 3.70 16 13 C 0.06 1.23 5.08 86.30 0.44 1.67 16 14 N -0.54 -17.64 4.63 -895.26 -4.14 -21.79 16 15 C 0.05 1.94 5.46 86.38 0.47 2.41 16 16 C 0.18 9.33 5.42 86.35 0.47 9.80 16 17 N -0.61 -31.63 3.04 -698.13 -2.12 -33.75 16 18 C -0.26 -14.66 9.63 84.04 0.81 -13.85 16 19 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -3.09 4.93 84.86 0.42 -2.67 16 21 N -0.94 -57.14 11.19 21.65 0.24 -56.90 16 22 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.14 5.82 6.69 86.35 0.58 6.40 16 27 C 0.06 1.85 5.62 86.38 0.49 2.34 16 28 C 0.04 0.48 4.86 86.32 0.42 0.90 16 29 H 0.06 0.36 6.28 -2.38 -0.01 0.34 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.03 0.31 8.08 -2.39 -0.02 0.29 16 34 H 0.12 0.83 6.05 -2.39 -0.01 0.82 16 35 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.42 4.25 8.34 -92.71 -0.77 3.47 16 39 H 0.05 1.50 6.40 -2.39 -0.02 1.48 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.11 1.76 7.97 -2.39 -0.02 1.74 16 42 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 2.72 6.16 -2.39 -0.01 2.71 16 45 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.05 3.07 6.15 -2.38 -0.01 3.05 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.06 2.49 7.95 -2.39 -0.02 2.47 16 50 H 0.10 2.47 7.99 -2.39 -0.02 2.45 16 51 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.12 0.97 8.01 -2.38 -0.02 0.95 16 53 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -78.22 407.02 -4.43 -82.65 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.11 Total: 11.31 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 7.41 Total: 28.22 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -12.94 Total: -138.67 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.04 Total: -31.07 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -78.22 -4.43 -82.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266296732.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.474 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds