Wall clock time and date at job start Sat Apr 11 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.47323 * 2 1 4 4 C 1.46904 * 110.99454 * 76.02342 * 3 2 1 5 5 C 1.53003 * 109.46960 * 199.54750 * 4 3 2 6 6 N 1.46499 * 109.46958 * 174.88849 * 5 4 3 7 7 C 1.34779 * 119.99932 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00255 * 179.72648 * 7 6 5 10 10 H 1.09000 * 109.46217 * 40.29741 * 9 7 6 11 11 C 1.53039 * 109.46360 * 280.33155 * 9 7 6 12 12 C 1.53124 * 109.27726 * 180.80190 * 11 9 7 13 13 C 1.53115 * 109.15961 * 57.65323 * 12 11 9 14 14 C 1.53035 * 109.28004 * 302.34583 * 13 12 11 15 15 N 1.46841 * 109.52532 * 59.17825 * 14 13 12 16 16 C 1.46903 * 111.00057 * 174.16104 * 15 14 13 17 17 C 1.46890 * 111.00628 * 199.98049 * 3 2 1 18 18 C 1.50702 * 109.46970 * 66.04405 * 17 3 2 19 19 O 1.21292 * 120.00150 * 0.02562 * 18 17 3 20 20 N 1.34782 * 119.99655 * 180.02562 * 18 17 3 21 21 C 1.37098 * 119.99768 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99817 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00314 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99797 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00264 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46890 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46892 * 119.99991 * 25 23 21 28 28 H 1.48499 * 109.46921 * 239.99930 * 25 23 21 29 29 H 1.08993 * 109.47221 * 294.86792 * 1 2 3 30 30 H 1.08998 * 109.46987 * 54.87263 * 1 2 3 31 31 H 1.09003 * 109.46800 * 174.86700 * 1 2 3 32 32 H 1.08999 * 109.47223 * 240.00197 * 2 1 3 33 33 H 1.08997 * 109.47675 * 120.00042 * 2 1 3 34 34 H 1.09003 * 109.46798 * 79.55137 * 4 3 2 35 35 H 1.08997 * 109.47340 * 319.54668 * 4 3 2 36 36 H 1.09008 * 109.47193 * 54.89270 * 5 4 3 37 37 H 1.09000 * 109.47251 * 294.89293 * 5 4 3 38 38 H 0.96999 * 120.00222 * 0.02562 * 6 5 4 39 39 H 1.09004 * 109.49889 * 300.74350 * 11 9 7 40 40 H 1.08998 * 109.50559 * 60.85921 * 11 9 7 41 41 H 1.08993 * 109.51941 * 297.74783 * 12 11 9 42 42 H 1.08999 * 109.51751 * 177.55697 * 12 11 9 43 43 H 1.08997 * 109.50368 * 182.40000 * 13 12 11 44 44 H 1.09006 * 109.50097 * 62.28518 * 13 12 11 45 45 H 1.09001 * 109.45836 * 299.16211 * 14 13 12 46 46 H 1.09008 * 109.45158 * 179.19165 * 14 13 12 47 47 H 1.09000 * 109.47125 * 184.20805 * 16 15 14 48 48 H 1.09003 * 109.47015 * 304.21159 * 16 15 14 49 49 H 1.08999 * 109.47149 * 64.21244 * 16 15 14 50 50 H 1.09000 * 109.47725 * 186.04765 * 17 3 2 51 51 H 1.09002 * 109.47246 * 306.04936 * 17 3 2 52 52 H 0.96997 * 120.00680 * 0.02562 * 20 18 17 53 53 H 0.96998 * 120.00361 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8828 1.9917 1.3309 5 6 1.9278 3.5157 1.2037 6 7 1.6696 4.1227 2.5118 7 6 1.6594 5.4641 2.6421 8 8 1.8635 6.1687 1.6763 9 6 1.3878 6.0886 3.9864 10 1 1.8983 5.5177 4.7619 11 6 -0.1185 6.0820 4.2568 12 6 -0.3913 6.7354 5.6145 13 6 0.1753 8.1578 5.6105 14 6 1.6730 8.1043 5.3009 15 7 1.8813 7.4717 3.9922 16 6 3.2958 7.5275 3.5996 17 6 3.4102 1.4518 -0.4686 18 6 3.4711 1.0500 -1.9198 19 8 2.4559 0.7391 -2.5061 20 7 4.6538 1.0362 -2.5660 21 6 4.7092 0.6712 -3.8864 22 1 3.8052 0.3943 -4.4084 23 6 5.9284 0.6564 -4.5526 24 7 7.0284 0.9928 -3.9173 25 14 6.0040 0.1584 -6.3514 26 1 4.6381 -0.1725 -6.8311 27 1 6.5523 1.2815 -7.1534 28 1 6.8816 -1.0304 -6.4995 29 1 -0.3633 0.4321 0.9323 30 1 -0.3633 0.5913 -0.8405 31 1 -0.3633 -1.0236 -0.0919 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.7004 1.6561 1.9689 35 1 0.9318 1.6917 1.7709 36 1 1.1676 3.8438 0.4946 37 1 2.9119 3.8219 0.8489 38 1 1.5060 3.5592 3.2842 39 1 -0.6311 6.6413 3.4741 40 1 -0.4817 5.0543 4.2679 41 1 0.0891 6.1541 6.4015 42 1 -1.4662 6.7719 5.7916 43 1 0.0219 8.6134 6.5888 44 1 -0.3328 8.7498 4.8491 45 1 2.1823 7.5239 6.0701 46 1 2.0764 9.1169 5.2832 47 1 3.4105 7.1196 2.5954 48 1 3.6357 8.5631 3.6123 49 1 3.8907 6.9413 4.3000 50 1 3.7826 2.4702 -0.3576 51 1 4.0258 0.7735 0.1223 52 1 5.4658 1.2845 -2.0971 53 1 7.8797 0.9821 -4.3822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266398994.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:29 Heat of formation + Delta-G solvation = -89.905464 kcal Electronic energy + Delta-G solvation = -30171.272339 eV Core-core repulsion = 26076.704238 eV Total energy + Delta-G solvation = -4094.568101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42760 -40.47407 -39.10916 -38.25036 -36.05330 -35.66438 -34.39017 -33.31127 -32.58911 -31.87379 -30.29344 -28.04580 -27.55392 -26.07503 -24.99324 -23.92919 -23.36784 -22.29845 -21.49604 -20.92538 -20.59358 -19.86752 -18.35313 -17.86173 -17.40461 -16.95294 -16.52600 -16.42456 -16.38083 -15.95437 -15.77676 -15.60700 -15.48131 -15.32383 -15.16801 -14.98659 -14.51144 -14.19059 -14.03800 -13.93056 -13.76154 -13.65919 -13.43959 -13.11585 -12.98589 -12.83706 -12.73923 -12.63049 -12.53837 -12.40842 -12.35534 -12.13999 -12.00262 -11.86513 -11.74356 -11.61125 -11.41343 -11.32591 -10.64796 -10.26184 -10.11102 -9.99382 -9.28827 -9.23261 -8.46777 -5.95076 1.35602 1.40468 1.54804 1.58092 1.92783 2.05802 2.28757 2.80544 2.97656 3.20151 3.37158 3.66470 3.81912 3.88330 3.98923 4.04132 4.07425 4.16855 4.17508 4.26947 4.31453 4.39132 4.44199 4.46385 4.50318 4.56379 4.58649 4.60388 4.72844 4.77229 4.80621 4.83483 4.91854 4.97615 5.03203 5.05739 5.07835 5.20131 5.22604 5.26683 5.39638 5.41153 5.43498 5.46941 5.89587 5.93904 6.08969 6.11656 6.21657 6.57535 6.60621 7.13309 7.26968 7.56863 8.12675 8.71026 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002064 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.031637 B =13565.636771 C =14912.346897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.535 5.535 4 C 0.054 3.946 5 C 0.131 3.869 6 N -0.712 5.712 7 C 0.510 3.490 8 O -0.568 6.568 9 C 0.076 3.924 10 H 0.084 0.916 11 C -0.106 4.106 12 C -0.115 4.115 13 C -0.119 4.119 14 C 0.055 3.945 15 N -0.544 5.544 16 C 0.018 3.982 17 C 0.056 3.944 18 C 0.441 3.559 19 O -0.611 6.611 20 N -0.577 5.577 21 C -0.329 4.329 22 H 0.079 0.921 23 C -0.016 4.016 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.417 0.583 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.032 0.968 50 H 0.100 0.900 51 H 0.072 0.928 52 H 0.395 0.605 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 8.030 27.350 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.073 4.073 3 N -0.260 5.260 4 C -0.073 4.073 5 C 0.006 3.994 6 N -0.365 5.365 7 C 0.297 3.703 8 O -0.445 6.445 9 C -0.035 4.035 10 H 0.102 0.898 11 C -0.144 4.144 12 C -0.152 4.152 13 C -0.157 4.157 14 C -0.072 4.072 15 N -0.270 5.270 16 C -0.130 4.130 17 C -0.075 4.075 18 C 0.228 3.772 19 O -0.496 6.496 20 N -0.215 5.215 21 C -0.459 4.459 22 H 0.097 0.903 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.195 1.195 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.254 0.746 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.051 0.949 50 H 0.118 0.882 51 H 0.090 0.910 52 H 0.228 0.772 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.768 8.849 25.529 29.471 hybrid contribution 1.801 -1.050 0.053 2.086 sum -9.967 7.799 25.582 28.541 Atomic orbital electron populations 1.21634 0.93754 1.01678 1.01852 1.22094 0.97240 0.87498 1.00484 1.61356 1.18745 1.20279 1.25625 1.22252 1.03729 0.92190 0.89162 1.21080 1.00549 0.93073 0.84718 1.45744 1.72467 1.06355 1.11981 1.21043 0.75797 0.82186 0.91321 1.90707 1.49367 1.62468 1.42004 1.21643 0.99202 0.90022 0.92661 0.89796 1.21590 0.91180 1.02639 0.98992 1.21577 1.02161 0.95767 0.95695 1.21642 0.94161 0.97641 1.02274 1.22223 0.97796 0.99494 0.87642 1.61608 1.18928 1.16041 1.30415 1.22476 0.87163 1.02526 1.00786 1.21770 0.90924 1.02774 0.92022 1.20768 0.83322 0.82922 0.90140 1.90484 1.35163 1.54178 1.69811 1.41960 1.08278 1.60294 1.10922 1.19680 0.94853 1.43806 0.87540 0.90321 1.26046 0.94134 0.97018 1.04322 1.69679 0.99078 1.48598 1.38955 0.84873 0.78243 0.78201 0.77034 1.19793 1.19787 1.19471 0.90947 0.94302 0.91561 0.92906 0.93093 0.91891 0.87650 0.93000 0.93330 0.74572 0.92714 0.88991 0.90369 0.90087 0.89345 0.92397 0.93636 0.90172 0.92355 0.90640 0.94902 0.88221 0.91043 0.77166 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.96 71.98 0.72 -2.63 16 2 C 0.05 1.62 5.18 86.30 0.45 2.06 16 3 N -0.53 -16.51 4.10 -900.80 -3.69 -20.20 16 4 C 0.05 1.12 4.92 86.30 0.42 1.55 16 5 C 0.13 3.16 5.70 86.38 0.49 3.66 16 6 N -0.71 -12.79 5.56 -463.05 -2.57 -15.36 16 7 C 0.51 11.86 6.26 87.66 0.55 12.41 16 8 O -0.57 -19.41 14.52 -3.03 -0.04 -19.45 16 9 C 0.08 1.25 2.24 44.19 0.10 1.35 16 10 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 11 C -0.11 -1.35 5.36 30.65 0.16 -1.19 16 12 C -0.11 -0.96 6.00 30.67 0.18 -0.78 16 13 C -0.12 -1.22 6.09 30.64 0.19 -1.03 16 14 C 0.06 0.71 5.46 86.33 0.47 1.18 16 15 N -0.54 -10.45 4.51 -901.61 -4.06 -14.51 16 16 C 0.02 0.38 9.10 127.69 1.16 1.54 16 17 C 0.06 1.96 5.27 85.56 0.45 2.41 16 18 C 0.44 21.35 7.29 87.66 0.64 21.99 16 19 O -0.61 -33.96 14.12 -3.07 -0.04 -34.01 16 20 N -0.58 -30.28 5.29 -306.97 -1.62 -31.91 16 21 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 24 N -0.92 -50.79 13.05 21.66 0.28 -50.51 16 25 Si 0.99 43.95 29.55 68.60 2.03 45.97 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H 0.07 1.39 6.91 -2.39 -0.02 1.38 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 2.06 5.85 -2.39 -0.01 2.05 16 33 H 0.05 1.22 7.99 -2.39 -0.02 1.20 16 34 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16 35 H 0.11 1.67 6.58 -2.39 -0.02 1.66 16 36 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.05 1.38 6.95 -2.39 -0.02 1.37 16 38 H 0.42 4.05 8.47 -92.71 -0.79 3.26 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 44 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.08 0.98 8.09 -2.38 -0.02 0.96 16 47 H 0.06 1.59 5.62 -2.39 -0.01 1.57 16 48 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 49 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.10 3.27 6.71 -2.39 -0.02 3.26 16 51 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 52 H 0.39 19.78 7.90 -92.71 -0.73 19.05 16 53 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -77.34 414.52 -3.07 -80.42 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.61 Total: 35.70 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 7.27 Total: 23.87 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -11.67 Total: -132.50 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.09 Total: -53.46 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.34 -3.07 -80.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266398994.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.488 kcal (2) G-P(sol) polarization free energy of solvation -77.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds