Wall clock time and date at job start Sat Apr 11 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47307 * 2 1 4 4 C 1.46843 * 110.99705 * 71.67552 * 3 2 1 5 5 C 1.53176 * 109.55259 * 185.83873 * 4 3 2 6 6 C 1.53110 * 109.20733 * 300.85780 * 5 4 3 7 7 C 1.53119 * 109.21448 * 57.62918 * 6 5 4 8 8 C 1.46848 * 110.99818 * 195.88709 * 3 2 1 9 9 H 1.09005 * 109.45932 * 294.17760 * 8 3 2 10 10 C 1.50695 * 109.45560 * 54.15029 * 8 3 2 11 11 O 1.21281 * 120.00136 * 28.88616 * 10 8 3 12 12 N 1.34780 * 120.00129 * 208.88548 * 10 8 3 13 13 C 1.46496 * 120.00490 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47404 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47036 * 64.99881 * 14 13 12 16 16 C 1.53003 * 109.47087 * 185.00177 * 14 13 12 17 17 N 1.46895 * 109.47175 * 304.99878 * 14 13 12 18 18 C 1.46899 * 111.00330 * 155.00020 * 17 14 13 19 19 C 1.50695 * 109.47500 * 179.97438 * 18 17 14 20 20 O 1.21300 * 119.99939 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00402 * 179.97438 * 19 18 17 22 22 C 1.37092 * 120.00311 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00043 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99905 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00248 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99837 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47278 * 90.00282 * 26 24 22 28 28 H 1.48499 * 109.46759 * 210.00125 * 26 24 22 29 29 H 1.48502 * 109.47088 * 329.99544 * 26 24 22 30 30 H 1.08994 * 109.47793 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46937 * 299.99796 * 1 2 3 32 32 H 1.09002 * 109.47246 * 59.99646 * 1 2 3 33 33 H 1.09004 * 109.46937 * 240.00204 * 2 1 3 34 34 H 1.09002 * 109.47246 * 120.00354 * 2 1 3 35 35 H 1.08994 * 109.46300 * 305.85341 * 4 3 2 36 36 H 1.09004 * 109.46233 * 65.82625 * 4 3 2 37 37 H 1.09006 * 109.58264 * 180.90938 * 5 4 3 38 38 H 1.08996 * 109.48502 * 60.75233 * 5 4 3 39 39 H 1.08995 * 109.52795 * 297.69062 * 6 5 4 40 40 H 1.08997 * 109.52355 * 177.56132 * 6 5 4 41 41 H 1.09005 * 109.50431 * 62.25276 * 7 6 5 42 42 H 1.09003 * 109.50786 * 182.33186 * 7 6 5 43 43 H 0.97008 * 119.99855 * 0.02562 * 12 10 8 44 44 H 1.09004 * 109.46966 * 300.00516 * 13 12 10 45 45 H 1.09005 * 109.46907 * 59.99705 * 13 12 10 46 46 H 1.08998 * 109.46800 * 179.97438 * 16 14 13 47 47 H 1.09005 * 109.46907 * 299.99950 * 16 14 13 48 48 H 1.08999 * 109.47425 * 59.99942 * 16 14 13 49 49 H 1.00901 * 111.00340 * 31.04893 * 17 14 13 50 50 H 1.09004 * 109.46784 * 300.00218 * 18 17 14 51 51 H 1.09000 * 109.46879 * 59.99594 * 18 17 14 52 52 H 0.96997 * 119.99441 * 0.02562 * 21 19 18 53 53 H 0.97005 * 120.00152 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7887 2.0248 1.3014 5 6 2.1761 3.5045 1.2211 6 6 3.6517 3.6184 0.8287 7 6 3.8748 2.9025 -0.5063 8 6 3.4383 1.4415 -0.3753 9 1 4.0368 0.9511 0.3924 10 6 3.6373 0.7379 -1.6929 11 8 2.7358 0.7018 -2.5034 12 7 4.8172 0.1486 -1.9708 13 6 5.0110 -0.5350 -3.2519 14 6 6.4266 -1.1120 -3.3131 15 1 6.5366 -1.8861 -2.5537 16 6 6.6714 -1.7167 -4.6971 17 7 7.4026 -0.0422 -3.0667 18 6 8.6592 -0.5877 -2.5365 19 6 9.6337 0.5366 -2.2973 20 8 9.3128 1.6801 -2.5437 21 7 10.8615 0.2718 -1.8086 22 6 11.7482 1.2945 -1.5915 23 1 11.4627 2.3126 -1.8117 24 6 13.0142 1.0214 -1.0881 25 7 13.3617 -0.2174 -0.8206 26 14 14.2222 2.4151 -0.7916 27 1 14.0549 2.9293 0.5914 28 1 15.6088 1.9144 -0.9692 29 1 13.9631 3.5094 -1.7614 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.7349 1.9394 1.5661 36 1 2.3951 1.5316 2.0612 37 1 2.0201 3.9762 2.1914 38 1 1.5606 4.0013 0.4712 39 1 4.2700 3.1557 1.5979 40 1 3.9217 4.6696 0.7278 41 1 3.2860 3.3899 -1.2835 42 1 4.9316 2.9449 -0.7699 43 1 5.5382 0.1771 -1.3223 44 1 4.2846 -1.3423 -3.3464 45 1 4.8729 0.1753 -4.0672 46 1 7.6801 -2.1274 -4.7408 47 1 5.9472 -2.5106 -4.8800 48 1 6.5615 -0.9426 -5.4565 49 1 7.0228 0.6582 -2.4475 50 1 8.4631 -1.1051 -1.5973 51 1 9.0830 -1.2886 -3.2557 52 1 11.1180 -0.6426 -1.6112 53 1 14.2457 -0.4081 -0.4696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266993825.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:43 Heat of formation + Delta-G solvation = -99.414555 kcal Electronic energy + Delta-G solvation = -30542.030867 eV Core-core repulsion = 26447.050421 eV Total energy + Delta-G solvation = -4094.980446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55435 -40.24594 -39.32635 -38.05428 -35.98046 -35.39161 -34.87133 -33.28417 -32.60038 -31.73929 -30.74050 -28.17957 -27.57674 -25.83507 -25.40225 -24.64946 -22.48798 -21.70817 -21.54732 -21.12202 -20.66214 -19.91971 -18.61576 -17.78606 -17.49675 -16.94595 -16.87441 -16.44776 -16.33370 -16.12913 -15.81066 -15.57773 -15.45642 -15.35977 -14.97130 -14.49500 -14.41376 -14.34189 -14.16597 -13.77574 -13.70213 -13.49755 -13.42126 -13.27573 -12.93704 -12.82462 -12.80149 -12.69147 -12.59517 -12.40864 -12.36297 -12.12793 -12.10927 -11.89529 -11.79305 -11.61373 -11.50205 -11.27016 -10.69068 -10.34104 -10.18766 -10.01065 -9.38240 -9.32435 -8.46578 -5.94876 1.37864 1.42313 1.51131 1.54540 1.96523 2.05717 2.28877 2.82554 2.87948 3.21113 3.47150 3.55730 3.70425 3.79123 3.90005 3.98694 4.08662 4.15502 4.21044 4.24023 4.26109 4.38111 4.40018 4.44930 4.54025 4.56421 4.59444 4.61434 4.69690 4.72293 4.80705 4.88337 4.91842 4.92176 5.03906 5.04899 5.07901 5.15735 5.19547 5.27551 5.33333 5.41435 5.42612 5.44845 5.87659 5.93157 6.08790 6.10668 6.34122 6.40080 6.60461 7.13266 7.13804 7.56918 8.12190 8.70663 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.002445 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.523604 B =11451.376273 C =13150.272046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.054 3.946 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.107 4.107 8 C 0.074 3.926 9 H 0.072 0.928 10 C 0.519 3.481 11 O -0.557 6.557 12 N -0.725 5.725 13 C 0.125 3.875 14 C 0.079 3.921 15 H 0.069 0.931 16 C -0.137 4.137 17 N -0.680 5.680 18 C 0.064 3.936 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.274 1.274 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.405 0.595 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.343 0.657 50 H 0.072 0.928 51 H 0.105 0.895 52 H 0.397 0.603 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.642 -3.687 5.612 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.073 4.073 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.145 4.145 8 C -0.038 4.038 9 H 0.089 0.911 10 C 0.305 3.695 11 O -0.434 6.434 12 N -0.379 5.379 13 C 0.001 3.999 14 C -0.030 4.030 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.315 5.315 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.241 0.759 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.072 0.928 49 H 0.163 0.837 50 H 0.090 0.910 51 H 0.123 0.877 52 H 0.231 0.769 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.373 -2.784 3.929 22.885 hybrid contribution 1.598 -0.450 1.666 2.352 sum -20.775 -3.234 5.595 21.756 Atomic orbital electron populations 1.21664 0.93592 1.02010 1.02105 1.22164 0.97557 0.88191 1.00272 1.61715 1.14790 1.18097 1.31093 1.22277 1.02117 0.94991 0.87879 1.21632 0.95770 0.95362 1.02509 1.21574 0.97274 1.01042 0.95625 1.21528 1.01082 0.92191 0.99695 1.21594 0.91207 0.97596 0.93361 0.91070 1.20758 0.81730 0.77790 0.89180 1.90684 1.42621 1.59923 1.50167 1.46096 1.15340 1.56337 1.20094 1.21534 0.96198 0.96936 0.85206 1.21847 0.88889 0.92600 0.99693 0.91333 1.21749 1.02432 1.00624 0.94731 1.60114 1.03797 1.14137 1.53446 1.21618 0.90210 0.94517 1.00469 1.20875 0.83785 0.90810 0.82049 1.90507 1.78526 1.24477 1.57395 1.41925 1.11960 1.09965 1.57120 1.19636 0.94567 0.90005 1.41924 0.90384 1.26000 0.99015 0.99802 0.96372 1.69663 1.22330 1.19467 1.44599 0.84966 0.77209 0.77672 0.78747 1.19520 1.19667 1.19923 0.91342 0.91637 0.93373 0.92283 0.94098 0.89156 0.94109 0.89360 0.91854 0.91209 0.90618 0.92061 0.91020 0.75923 0.89775 0.92163 0.92194 0.90050 0.92824 0.83678 0.90974 0.87738 0.76948 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.96 71.98 0.72 -1.51 16 2 C 0.05 0.88 5.32 86.30 0.46 1.34 16 3 N -0.53 -10.74 4.21 -875.23 -3.69 -14.42 16 4 C 0.05 0.82 5.31 86.37 0.46 1.28 16 5 C -0.12 -1.64 6.11 30.69 0.19 -1.45 16 6 C -0.12 -1.89 6.00 30.67 0.18 -1.71 16 7 C -0.11 -2.20 5.36 30.65 0.16 -2.04 16 8 C 0.07 1.54 2.23 44.19 0.10 1.64 16 9 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 10 C 0.52 12.98 5.69 87.65 0.50 13.48 16 11 O -0.56 -17.90 15.37 -3.03 -0.05 -17.95 16 12 N -0.73 -15.63 4.99 -463.07 -2.31 -17.94 16 13 C 0.13 2.69 5.31 86.38 0.46 3.15 16 14 C 0.08 1.65 2.81 44.92 0.13 1.78 16 15 H 0.07 1.21 7.80 -2.39 -0.02 1.19 16 16 C -0.14 -2.67 9.41 71.98 0.68 -1.99 16 17 N -0.68 -19.69 5.92 -495.60 -2.94 -22.63 16 18 C 0.06 2.01 5.96 85.56 0.51 2.52 16 19 C 0.44 19.89 7.82 87.66 0.69 20.58 16 20 O -0.62 -33.46 15.78 -3.09 -0.05 -33.51 16 21 N -0.57 -28.37 5.29 -306.98 -1.62 -29.99 16 22 C -0.33 -18.43 9.68 84.04 0.81 -17.61 16 23 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 25 N -0.92 -48.59 13.05 21.66 0.28 -48.31 16 26 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.88 6.65 -2.39 -0.02 0.87 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.40 5.68 -2.39 -0.01 1.38 16 34 H 0.04 0.68 8.06 -2.39 -0.02 0.66 16 35 H 0.09 1.18 6.49 -2.39 -0.02 1.17 16 36 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.40 7.70 7.37 -92.70 -0.68 7.02 16 44 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 47 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.34 10.40 6.41 -89.69 -0.58 9.82 16 50 H 0.07 1.88 8.06 -2.38 -0.02 1.86 16 51 H 0.10 2.99 7.43 -2.39 -0.02 2.98 16 52 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 53 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -70.34 416.71 -2.90 -73.25 By element: Atomic # 1 Polarization: 49.03 SS G_CDS: -1.07 Total: 47.96 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 6.51 Total: 19.30 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -10.27 Total: -133.29 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.10 Total: -51.45 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -70.34 -2.90 -73.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266993825.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.166 kcal (2) G-P(sol) polarization free energy of solvation -70.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds