Wall clock time and date at job start Sat Apr 11 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46930 * 2 1 4 4 C 1.53001 * 109.47144 * 240.00132 * 2 1 3 5 5 N 1.46900 * 109.46927 * 184.99880 * 4 2 1 6 6 C 1.46903 * 110.99907 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47024 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00201 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99742 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99803 * 179.97438 * 9 7 6 11 11 H 1.07995 * 119.99561 * 0.02562 * 10 9 7 12 12 C 1.38946 * 119.99760 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99678 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00358 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47164 * 89.99637 * 14 12 10 16 16 H 1.48496 * 109.47189 * 210.00489 * 14 12 10 17 17 H 1.48510 * 109.46665 * 330.00120 * 14 12 10 18 18 N 1.46499 * 109.47047 * 120.00234 * 2 1 3 19 19 C 1.34779 * 120.00120 * 274.99883 * 18 2 1 20 20 O 1.21281 * 119.99751 * 0.02562 * 19 18 2 21 21 C 1.50693 * 120.00413 * 180.02562 * 19 18 2 22 22 C 1.52999 * 109.47338 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46848 * 185.30747 * 22 21 19 24 24 H 1.08997 * 110.42852 * 57.81346 * 23 22 21 25 25 C 1.54909 * 110.37098 * 180.12795 * 23 22 21 26 26 C 1.55139 * 101.65374 * 155.89671 * 25 23 22 27 27 C 1.54319 * 103.01920 * 324.34605 * 26 25 23 28 28 N 1.47439 * 107.23272 * 22.28378 * 27 26 25 29 29 C 1.46905 * 111.00057 * 123.26148 * 28 27 26 30 30 H 1.08991 * 109.47095 * 299.99402 * 1 2 3 31 31 H 1.09001 * 109.46781 * 60.00299 * 1 2 3 32 32 H 1.08999 * 109.46763 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47364 * 304.99994 * 4 2 1 34 34 H 1.08998 * 109.47354 * 65.00252 * 4 2 1 35 35 H 1.00900 * 111.00181 * 303.95467 * 5 4 2 36 36 H 1.08998 * 109.47338 * 300.00026 * 6 5 4 37 37 H 1.09002 * 109.47276 * 59.99767 * 6 5 4 38 38 H 0.96998 * 120.00053 * 0.02562 * 9 7 6 39 39 H 0.97009 * 120.00000 * 179.97438 * 13 12 10 40 40 H 0.96994 * 120.00198 * 95.00493 * 18 2 1 41 41 H 1.09006 * 109.46932 * 59.99911 * 21 19 18 42 42 H 1.09001 * 109.47379 * 300.00434 * 21 19 18 43 43 H 1.08995 * 109.47171 * 65.30575 * 22 21 19 44 44 H 1.09002 * 109.46674 * 305.30094 * 22 21 19 45 45 H 1.09005 * 110.99259 * 37.80641 * 25 23 22 46 46 H 1.08998 * 110.99221 * 273.98930 * 25 23 22 47 47 H 1.09005 * 110.70914 * 205.96433 * 26 25 23 48 48 H 1.09000 * 110.85534 * 82.79616 * 26 25 23 49 49 H 1.09004 * 109.89180 * 262.87657 * 27 26 25 50 50 H 1.09000 * 110.02297 * 141.76548 * 27 26 25 51 51 H 1.08998 * 109.47464 * 54.27070 * 29 28 27 52 52 H 1.08999 * 109.46629 * 294.26659 * 29 28 27 53 53 H 1.08999 * 109.47060 * 174.27612 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.0304 -1.5147 -2.3767 7 6 5.5317 -1.6043 -2.2807 8 8 6.1066 -1.1409 -1.3185 9 7 6.2355 -2.2002 -3.2636 10 6 7.6014 -2.2812 -3.1765 11 1 8.1132 -1.8679 -2.3200 12 6 8.3269 -2.8951 -4.1900 13 7 9.6360 -2.9732 -4.1063 14 14 7.4416 -3.6094 -5.6717 15 1 7.3225 -2.5701 -6.7257 16 1 8.2120 -4.7639 -6.1996 17 1 6.0861 -4.0621 -5.2676 18 7 2.0183 -0.6907 1.1961 19 6 2.1471 -0.0184 2.3572 20 8 1.8582 1.1583 2.4118 21 6 2.6499 -0.7286 3.5874 22 6 2.7007 0.2543 4.7589 23 6 3.3344 -0.4301 5.9717 24 1 4.3334 -0.7904 5.7263 25 6 3.3933 0.5469 7.1724 26 6 3.4380 -0.4346 8.3731 27 6 2.5323 -1.5943 7.9080 28 7 2.4839 -1.5470 6.4352 29 6 2.9250 -2.8215 5.8527 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1583 -2.1370 35 1 3.9280 0.0826 -1.0823 36 1 3.6097 -2.5188 -2.4310 37 1 3.7559 -0.9569 -3.2721 38 1 5.7758 -2.5711 -4.0330 39 1 10.1426 -3.4021 -4.8137 40 1 2.2491 -1.6317 1.1526 41 1 3.6493 -1.1204 3.3978 42 1 1.9778 -1.5510 3.8325 43 1 1.6891 0.5737 5.0093 44 1 3.2971 1.1227 4.4789 45 1 2.5008 1.1715 7.2118 46 1 4.2947 1.1585 7.1344 47 1 3.0333 0.0346 9.2698 48 1 4.4546 -0.7863 8.5491 49 1 1.5295 -1.4684 8.3163 50 1 2.9487 -2.5472 8.2349 51 1 2.3387 -3.6369 6.2763 52 1 3.9801 -2.9777 6.0773 53 1 2.7836 -2.7954 4.7722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268648270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:01 Heat of formation + Delta-G solvation = -101.894590 kcal Electronic energy + Delta-G solvation = -29620.390225 eV Core-core repulsion = 25525.302236 eV Total energy + Delta-G solvation = -4095.087988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.94888 -40.29247 -39.96072 -37.80729 -36.06033 -35.09433 -34.30707 -33.73330 -33.00470 -31.98906 -29.22686 -29.02899 -26.70398 -26.59417 -24.85998 -24.24887 -22.22474 -21.97168 -21.27638 -21.21215 -20.77737 -20.24282 -18.18462 -17.87894 -17.44325 -17.30390 -16.74565 -16.42316 -16.29935 -16.16805 -15.74367 -15.37588 -15.06097 -14.95666 -14.84932 -14.76721 -14.46588 -14.25717 -14.11715 -14.00310 -13.81432 -13.49739 -13.23988 -13.15516 -13.11690 -12.98824 -12.79858 -12.65795 -12.42230 -12.40851 -12.12115 -12.04131 -11.97659 -11.84161 -11.71635 -11.65367 -11.50718 -11.46429 -10.71454 -10.43318 -10.24472 -9.92989 -9.33997 -9.26932 -8.40927 -6.01946 1.30590 1.36324 1.45345 1.77627 1.97387 2.23590 2.35538 2.72848 3.03165 3.15771 3.40392 3.66699 3.71971 3.83626 3.96434 4.08518 4.13128 4.17038 4.23889 4.25605 4.38986 4.45125 4.48688 4.50088 4.55675 4.57849 4.59901 4.64468 4.67229 4.77764 4.79143 4.84606 4.92033 4.94633 5.01112 5.05606 5.10365 5.11482 5.19703 5.29497 5.34162 5.37960 5.52919 5.66613 5.90219 6.04045 6.05491 6.16526 6.30315 6.60244 6.71070 6.88970 7.40338 7.40763 7.98000 8.76770 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.002076 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.508203 B =13484.905886 C =15119.138291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.058 0.942 4 C 0.056 3.944 5 N -0.682 5.682 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.615 6.615 9 N -0.591 5.591 10 C -0.328 4.328 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.228 1.228 18 N -0.703 5.703 19 C 0.509 3.491 20 O -0.592 6.592 21 C -0.132 4.132 22 C -0.077 4.077 23 C 0.071 3.929 24 H 0.053 0.947 25 C -0.126 4.126 26 C -0.139 4.139 27 C 0.039 3.961 28 N -0.539 5.539 29 C 0.010 3.990 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.339 0.661 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.412 0.588 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.061 0.939 51 H 0.076 0.924 52 H 0.025 0.975 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.925 -0.520 14.817 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.076 0.924 4 C -0.073 4.073 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.500 6.500 9 N -0.233 5.233 10 C -0.457 4.457 11 H 0.071 0.929 12 C -0.216 4.216 13 N -0.576 5.576 14 Si 0.786 3.214 15 H -0.183 1.183 16 H -0.202 1.202 17 H -0.151 1.151 18 N -0.354 5.354 19 C 0.297 3.703 20 O -0.473 6.473 21 C -0.172 4.172 22 C -0.115 4.115 23 C -0.037 4.037 24 H 0.071 0.929 25 C -0.165 4.165 26 C -0.177 4.177 27 C -0.089 4.089 28 N -0.264 5.264 29 C -0.138 4.138 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.248 0.752 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.097 0.903 50 H 0.079 0.921 51 H 0.094 0.906 52 H 0.043 0.957 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.077 0.036 15.618 27.865 hybrid contribution 1.424 -0.133 -1.249 1.899 sum -21.653 -0.097 14.369 25.987 Atomic orbital electron populations 1.22041 0.93363 1.03178 1.02392 1.20946 0.94765 0.96200 0.84327 0.92358 1.22370 0.86601 1.02239 0.96081 1.60066 1.05515 1.26365 1.39453 1.21646 0.89266 1.02570 0.93439 1.21072 0.90884 0.81475 0.83044 1.90554 1.73000 1.51959 1.34445 1.42035 1.06069 1.53938 1.21273 1.18989 0.81993 1.37436 1.07300 0.92862 1.26155 0.96220 0.97354 1.01893 1.69813 1.07550 1.44499 1.35774 0.85341 0.79791 0.78751 0.77476 1.18286 1.20159 1.15122 1.45878 1.66102 1.14656 1.08748 1.21163 0.76499 0.86881 0.85739 1.90647 1.52655 1.17969 1.86034 1.21768 1.03382 1.00259 0.91789 1.21138 1.01309 0.96696 0.92372 1.22638 0.94383 0.91681 0.95038 0.92893 1.22746 1.02734 0.97431 0.93548 1.22764 1.00137 0.96131 0.98657 1.22875 1.00359 0.98389 0.87246 1.63478 1.51954 1.03881 1.07098 1.22770 0.98353 0.91266 1.01405 0.93861 0.90133 0.90653 0.88131 0.91983 0.84321 0.86214 0.90502 0.77426 0.91190 0.75165 0.88848 0.86709 0.91907 0.92564 0.90723 0.90431 0.89546 0.91350 0.90339 0.92095 0.90563 0.95653 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.87 2.81 44.99 0.13 3.00 16 3 H 0.06 1.50 7.58 -2.39 -0.02 1.49 16 4 C 0.06 0.98 5.24 86.30 0.45 1.43 16 5 N -0.68 -18.07 5.85 -517.92 -3.03 -21.10 16 6 C 0.06 1.73 6.17 85.56 0.53 2.26 16 7 C 0.45 19.47 7.82 87.66 0.69 20.15 16 8 O -0.62 -33.55 15.78 -3.04 -0.05 -33.60 16 9 N -0.59 -27.12 5.09 -306.99 -1.56 -28.68 16 10 C -0.33 -19.03 10.16 84.04 0.85 -18.17 16 11 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 12 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 13 N -0.94 -56.23 13.96 21.66 0.30 -55.93 16 14 Si 0.97 38.04 27.74 68.60 1.90 39.94 16 15 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 16 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 17 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 18 N -0.70 -14.97 4.80 -442.54 -2.12 -17.09 16 19 C 0.51 13.05 7.79 87.65 0.68 13.73 16 20 O -0.59 -19.76 15.58 -3.03 -0.05 -19.81 16 21 C -0.13 -2.67 4.49 29.85 0.13 -2.53 16 22 C -0.08 -1.64 4.30 30.59 0.13 -1.50 16 23 C 0.07 1.27 2.59 45.39 0.12 1.39 16 24 H 0.05 1.01 7.70 -2.39 -0.02 0.99 16 25 C -0.13 -1.97 6.49 31.98 0.21 -1.77 16 26 C -0.14 -1.76 6.94 31.77 0.22 -1.54 16 27 C 0.04 0.53 6.89 86.65 0.60 1.13 16 28 N -0.54 -8.97 4.92 -886.63 -4.36 -13.33 16 29 C 0.01 0.15 8.82 127.69 1.13 1.27 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.34 10.61 8.43 -89.69 -0.76 9.86 16 36 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.39 14.60 5.76 -92.71 -0.53 14.07 16 39 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 40 H 0.41 7.47 8.60 -92.71 -0.80 6.67 16 41 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.11 1.91 6.19 -2.39 -0.01 1.89 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.38 7.94 -2.39 -0.02 1.37 16 45 H 0.07 1.21 8.06 -2.38 -0.02 1.19 16 46 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 50 H 0.06 0.75 7.58 -2.39 -0.02 0.73 16 51 H 0.08 0.94 8.13 -2.39 -0.02 0.93 16 52 H 0.02 0.38 7.97 -2.39 -0.02 0.36 16 53 H 0.08 1.07 5.38 -2.39 -0.01 1.06 16 Total: -1.00 -80.44 420.80 -3.18 -83.62 By element: Atomic # 1 Polarization: 50.60 SS G_CDS: -1.23 Total: 49.37 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 7.01 Total: 16.61 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -10.78 Total: -136.13 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -0.10 Total: -53.41 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -80.44 -3.18 -83.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268648270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.274 kcal (2) G-P(sol) polarization free energy of solvation -80.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds