Wall clock time and date at job start Sat Apr 11 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46854 * 2 1 4 4 C 1.53004 * 109.46705 * 119.99455 * 2 1 3 5 5 N 1.46904 * 109.46709 * 174.05140 * 4 2 1 6 6 C 1.46905 * 110.99597 * 193.88708 * 5 4 2 7 7 C 1.46899 * 111.00078 * 69.93563 * 5 4 2 8 8 C 1.50697 * 109.46878 * 189.99825 * 7 5 4 9 9 O 1.21291 * 120.00351 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99996 * 179.97438 * 8 7 5 11 11 C 1.37093 * 120.00183 * 179.97438 * 10 8 7 12 12 H 1.08005 * 119.99972 * 0.02562 * 11 10 8 13 13 C 1.38947 * 120.00272 * 180.02562 * 11 10 8 14 14 N 1.31419 * 119.99994 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00234 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47449 * 89.99994 * 15 13 11 17 17 H 1.48503 * 109.46864 * 210.00033 * 15 13 11 18 18 H 1.48500 * 109.46790 * 329.99748 * 15 13 11 19 19 N 1.46493 * 109.47343 * 239.99636 * 2 1 3 20 20 C 1.34772 * 120.00136 * 82.29205 * 19 2 1 21 21 O 1.21275 * 120.00422 * 5.17858 * 20 19 2 22 22 C 1.50706 * 119.99930 * 185.17744 * 20 19 2 23 23 N 1.46894 * 112.84757 * 170.40796 * 22 20 19 24 24 C 1.46903 * 111.00357 * 301.90169 * 23 22 20 25 25 C 1.46897 * 111.00022 * 65.85587 * 23 22 20 26 26 C 1.53787 * 113.61289 * 39.10673 * 22 20 19 27 27 C 1.53779 * 87.07870 * 220.01655 * 26 22 20 28 28 C 1.53775 * 113.61603 * 301.60719 * 22 20 19 29 29 H 1.09000 * 109.47496 * 300.00607 * 1 2 3 30 30 H 1.09006 * 109.46765 * 60.00524 * 1 2 3 31 31 H 1.09004 * 109.47141 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47009 * 54.05043 * 4 2 1 33 33 H 1.09001 * 109.47373 * 294.04799 * 4 2 1 34 34 H 1.09000 * 109.47067 * 65.04927 * 6 5 4 35 35 H 1.09004 * 109.46791 * 185.04769 * 6 5 4 36 36 H 1.09000 * 109.47056 * 305.04952 * 6 5 4 37 37 H 1.08996 * 109.47041 * 309.99647 * 7 5 4 38 38 H 1.08998 * 109.47128 * 69.99928 * 7 5 4 39 39 H 0.96999 * 120.00039 * 0.02562 * 10 8 7 40 40 H 0.96991 * 120.00056 * 180.02562 * 14 13 11 41 41 H 0.97005 * 119.99999 * 262.29077 * 19 2 1 42 42 H 1.08991 * 109.47008 * 65.63428 * 24 23 22 43 43 H 1.09003 * 109.47336 * 185.63681 * 24 23 22 44 44 H 1.08998 * 109.47234 * 305.63070 * 24 23 22 45 45 H 1.09004 * 109.47172 * 60.00019 * 25 23 22 46 46 H 1.09006 * 109.47839 * 179.97438 * 25 23 22 47 47 H 1.09000 * 109.47378 * 299.99840 * 25 23 22 48 48 H 1.09000 * 113.61190 * 334.56338 * 26 22 20 49 49 H 1.09001 * 113.61445 * 105.46592 * 26 22 20 50 50 H 1.09001 * 113.61456 * 270.88598 * 27 26 22 51 51 H 1.08999 * 113.68858 * 139.99406 * 27 26 22 52 52 H 1.08997 * 113.61725 * 254.52936 * 28 22 20 53 53 H 1.08998 * 113.61302 * 25.35300 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5019 -0.8467 1.1798 6 6 3.9958 -1.8063 2.1764 7 6 4.1509 0.4612 1.3414 8 6 5.6185 0.3365 1.0225 9 8 6.0786 -0.7364 0.6934 10 7 6.4198 1.4172 1.1029 11 6 7.7549 1.3037 0.8133 12 1 8.1646 0.3483 0.5202 13 6 8.5811 2.4178 0.8967 14 7 8.0828 3.5802 1.2538 15 14 10.4003 2.2632 0.5014 16 1 10.6161 2.5203 -0.9452 17 1 11.1662 3.2538 1.2998 18 1 10.8647 0.8928 0.8353 19 7 2.0184 -0.6906 -1.1960 20 6 2.0954 -0.0328 -2.3698 21 8 1.8506 1.1540 -2.4171 22 6 2.4859 -0.7721 -3.6237 23 7 2.3051 0.0320 -4.8396 24 6 0.9105 0.4728 -4.9768 25 6 3.2234 1.1785 -4.8540 26 6 1.8817 -2.1830 -3.7204 27 6 3.2365 -2.6390 -4.2872 28 6 3.8619 -1.4529 -3.5342 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.5922 -1.7133 1.3043 33 1 1.7662 -0.1494 2.1361 34 1 3.6231 -2.8024 1.9376 35 1 5.0858 -1.8138 2.1645 36 1 3.6452 -1.5148 3.1664 37 1 3.6917 1.1809 0.6638 38 1 4.0303 0.8020 2.3697 39 1 6.0519 2.2752 1.3665 40 1 8.6594 4.3579 1.3117 41 1 2.2863 -1.6215 -1.1432 42 1 0.6648 1.1585 -4.1660 43 1 0.7822 0.9800 -5.9331 44 1 0.2498 -0.3930 -4.9333 45 1 4.2524 0.8203 -4.8216 46 1 3.0689 1.7566 -5.7651 47 1 3.0308 1.8092 -3.9861 48 1 1.6431 -2.6231 -2.7522 49 1 1.0617 -2.2588 -4.4346 50 1 3.3071 -2.5538 -5.3716 51 1 3.5612 -3.6114 -3.9170 52 1 4.6406 -0.9393 -4.0981 53 1 4.1652 -1.6921 -2.5150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268734568.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:08 Heat of formation + Delta-G solvation = -53.128995 kcal Electronic energy + Delta-G solvation = -32262.529302 eV Core-core repulsion = 28169.555948 eV Total energy + Delta-G solvation = -4092.973354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.96944 -40.46224 -39.22058 -38.11358 -36.48602 -35.88191 -35.18271 -33.28706 -31.98400 -29.61597 -28.93864 -27.99741 -27.46453 -26.61750 -26.17450 -24.39353 -23.56984 -22.30092 -21.70238 -20.84451 -19.91951 -19.85351 -18.40051 -17.90369 -17.47638 -16.78034 -16.69291 -16.54357 -16.17496 -15.97675 -15.74430 -15.60296 -15.30445 -15.13366 -15.05197 -14.90240 -14.69708 -14.12728 -13.72388 -13.55559 -13.42483 -13.36334 -13.10887 -13.01632 -12.94644 -12.90772 -12.79477 -12.70359 -12.67858 -12.51834 -12.43853 -12.36886 -12.25786 -12.13790 -11.73029 -11.60534 -11.44863 -11.19976 -11.00443 -10.27430 -10.01383 -9.94368 -9.26348 -9.15060 -8.47631 -5.96449 1.36017 1.39199 1.52189 1.60064 2.03926 2.23431 2.28713 2.77886 2.81610 3.19157 3.35616 3.55324 3.63299 3.76131 3.87876 3.91257 4.11811 4.15040 4.15994 4.30316 4.37091 4.41934 4.49087 4.55079 4.56483 4.62618 4.64088 4.69933 4.71475 4.74120 4.76341 4.80737 4.91492 4.93042 5.01043 5.04086 5.12122 5.12291 5.21254 5.21904 5.26436 5.39131 5.41143 5.62408 5.85882 5.91217 5.97190 6.04969 6.19361 6.58318 6.64631 7.11462 7.32813 7.54692 8.09708 8.70161 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010011 B = 0.003691 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.230430 B = 7585.083756 C = 8872.410132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.142 3.858 3 H 0.051 0.949 4 C 0.050 3.950 5 N -0.527 5.527 6 C 0.029 3.971 7 C 0.059 3.941 8 C 0.444 3.556 9 O -0.605 6.605 10 N -0.578 5.578 11 C -0.329 4.329 12 H 0.081 0.919 13 C -0.015 4.015 14 N -0.924 5.924 15 Si 0.992 3.008 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.269 1.269 19 N -0.693 5.693 20 C 0.497 3.503 21 O -0.585 6.585 22 C 0.054 3.946 23 N -0.495 5.495 24 C 0.016 3.984 25 C 0.014 3.986 26 C -0.105 4.105 27 C -0.110 4.110 28 C -0.130 4.130 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.392 0.608 40 H 0.276 0.724 41 H 0.410 0.590 42 H 0.026 0.974 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.026 0.974 48 H 0.102 0.898 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.060 0.940 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.205 -11.118 -5.704 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.036 3.964 3 H 0.069 0.931 4 C -0.078 4.078 5 N -0.251 5.251 6 C -0.119 4.119 7 C -0.073 4.073 8 C 0.232 3.768 9 O -0.491 6.491 10 N -0.215 5.215 11 C -0.459 4.459 12 H 0.099 0.901 13 C -0.214 4.214 14 N -0.565 5.565 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.194 1.194 19 N -0.344 5.344 20 C 0.283 3.717 21 O -0.466 6.466 22 C -0.040 4.040 23 N -0.217 5.217 24 C -0.132 4.132 25 C -0.134 4.134 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.168 4.168 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.225 0.775 40 H 0.086 0.914 41 H 0.247 0.753 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.045 0.955 48 H 0.120 0.880 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.104 0.896 52 H 0.079 0.921 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.769 -11.303 -6.788 22.126 hybrid contribution 0.842 1.719 1.583 2.484 sum -16.926 -9.584 -5.205 20.136 Atomic orbital electron populations 1.22027 0.92985 1.03374 1.02288 1.20997 0.94796 0.96093 0.84500 0.93057 1.22559 0.86485 1.02721 0.96028 1.61511 1.04975 1.07281 1.51327 1.22416 1.01266 0.96207 0.91990 1.21677 0.91518 0.93233 1.00840 1.20656 0.89028 0.84287 0.82872 1.90450 1.77156 1.28351 1.53126 1.41975 1.08315 1.10349 1.60894 1.19655 0.84626 0.96798 1.44775 0.90080 1.26059 1.04603 0.94126 0.96649 1.69689 1.38341 1.00447 1.48065 0.84936 0.76792 0.78288 0.78397 1.19850 1.19571 1.19377 1.45867 1.65013 1.15876 1.07679 1.21917 0.75915 0.87323 0.86553 1.90594 1.52114 1.17013 1.86868 1.22638 1.00441 0.94565 0.86330 1.62388 1.06282 1.21358 1.31644 1.22499 0.88360 1.00748 1.01563 1.22460 0.96551 0.92826 1.01568 1.22988 0.98515 0.89907 1.02914 1.22656 0.94435 0.97133 1.00541 1.23035 0.94021 0.98108 1.01657 0.90192 0.94023 0.90165 0.87076 0.91896 0.89486 0.92943 0.94983 0.89712 0.91823 0.77521 0.91416 0.75327 0.95521 0.90270 0.90219 0.92246 0.90069 0.95487 0.87983 0.89172 0.89132 0.89582 0.92086 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.45 71.98 0.68 -1.92 16 2 C 0.14 3.27 2.47 44.99 0.11 3.38 16 3 H 0.05 1.56 6.21 -2.39 -0.01 1.54 16 4 C 0.05 1.00 4.51 86.30 0.39 1.39 16 5 N -0.53 -15.35 4.17 -927.04 -3.87 -19.22 16 6 C 0.03 0.81 9.21 127.69 1.18 1.99 16 7 C 0.06 2.11 5.31 85.56 0.45 2.56 16 8 C 0.44 21.43 7.42 87.66 0.65 22.08 16 9 O -0.61 -32.54 13.96 -3.06 -0.04 -32.59 16 10 N -0.58 -30.69 5.29 -306.99 -1.62 -32.31 16 11 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 12 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 13 C -0.02 -0.83 5.50 84.92 0.47 -0.36 16 14 N -0.92 -51.60 13.05 21.66 0.28 -51.32 16 15 Si 0.99 43.87 29.55 68.60 2.03 45.89 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 N -0.69 -16.91 4.45 -442.55 -1.97 -18.88 16 20 C 0.50 14.61 6.44 87.66 0.56 15.17 16 21 O -0.58 -21.52 12.01 -3.01 -0.04 -21.56 16 22 C 0.05 1.35 0.41 3.31 0.00 1.35 16 23 N -0.49 -12.59 4.81 -899.94 -4.32 -16.92 16 24 C 0.02 0.37 9.10 127.69 1.16 1.53 16 25 C 0.01 0.41 9.17 127.69 1.17 1.58 16 26 C -0.11 -1.80 7.02 31.12 0.22 -1.58 16 27 C -0.11 -2.00 8.00 31.12 0.25 -1.75 16 28 C -0.13 -3.35 7.07 31.12 0.22 -3.13 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 1.62 8.03 -2.39 -0.02 1.60 16 33 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.96 5.79 -2.39 -0.01 1.95 16 36 H 0.03 0.77 8.13 -2.39 -0.02 0.75 16 37 H 0.08 3.10 6.40 -2.39 -0.02 3.08 16 38 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 39 H 0.39 20.29 7.90 -92.71 -0.73 19.55 16 40 H 0.28 14.47 8.31 -92.72 -0.77 13.70 16 41 H 0.41 8.71 6.97 -92.70 -0.65 8.06 16 42 H 0.03 0.75 6.02 -2.39 -0.01 0.74 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.49 6.98 -2.39 -0.02 1.48 16 45 H 0.06 1.77 6.61 -2.38 -0.02 1.75 16 46 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.03 0.95 5.83 -2.39 -0.01 0.94 16 48 H 0.10 1.41 6.76 -2.39 -0.02 1.40 16 49 H 0.09 1.35 7.17 -2.39 -0.02 1.33 16 50 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.06 1.77 6.65 -2.39 -0.02 1.75 16 53 H 0.08 2.35 7.75 -2.39 -0.02 2.33 16 Total: -1.00 -72.49 409.33 -1.68 -74.17 By element: Atomic # 1 Polarization: 49.11 SS G_CDS: -0.45 Total: 48.66 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 8.33 Total: 24.07 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -11.50 Total: -138.65 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -0.08 Total: -54.14 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.49 -1.68 -74.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268734568.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.041 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds