Wall clock time and date at job start Sat Apr 11 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47230 * 239.99573 * 2 1 3 5 5 N 1.46898 * 109.46921 * 184.83504 * 4 2 1 6 6 C 1.46900 * 111.00013 * 163.81348 * 5 4 2 7 7 C 1.46904 * 111.00133 * 287.76197 * 5 4 2 8 8 C 1.50706 * 109.47362 * 169.99636 * 7 5 4 9 9 O 1.21287 * 119.99530 * 0.02562 * 8 7 5 10 10 N 1.34771 * 120.00177 * 180.02562 * 8 7 5 11 11 C 1.37096 * 120.00312 * 180.02562 * 10 8 7 12 12 H 1.08004 * 119.99730 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00290 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99919 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99926 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47101 * 59.99818 * 15 13 11 17 17 H 1.48497 * 109.46854 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47015 * 299.99595 * 15 13 11 19 19 N 1.46499 * 109.46601 * 119.99797 * 2 1 3 20 20 C 1.34779 * 119.99897 * 275.14483 * 19 2 1 21 21 O 1.21276 * 120.00065 * 0.02562 * 20 19 2 22 22 C 1.50700 * 119.99852 * 180.02562 * 20 19 2 23 23 N 1.46895 * 109.47229 * 173.74934 * 22 20 19 24 24 C 1.47908 * 111.00260 * 183.91079 * 23 22 20 25 25 C 1.53994 * 107.05916 * 145.84115 * 24 23 22 26 26 C 1.54600 * 105.14081 * 358.77567 * 25 24 23 27 27 H 1.09008 * 110.72068 * 96.57678 * 26 25 24 28 28 C 1.52998 * 110.72408 * 219.68095 * 26 25 24 29 29 C 1.48531 * 110.99926 * 301.30690 * 23 22 20 30 30 H 1.08998 * 109.47631 * 300.00622 * 1 2 3 31 31 H 1.09006 * 109.47152 * 60.00469 * 1 2 3 32 32 H 1.09002 * 109.47547 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47804 * 304.83427 * 4 2 1 34 34 H 1.09004 * 109.47316 * 64.83881 * 4 2 1 35 35 H 1.09000 * 109.46998 * 66.35683 * 6 5 4 36 36 H 1.09006 * 109.47198 * 186.35403 * 6 5 4 37 37 H 1.08992 * 109.47208 * 306.35409 * 6 5 4 38 38 H 1.08994 * 109.47282 * 290.00540 * 7 5 4 39 39 H 1.09001 * 109.46998 * 50.00406 * 7 5 4 40 40 H 0.97005 * 119.99774 * 0.02562 * 10 8 7 41 41 H 0.96998 * 120.00216 * 179.97438 * 14 13 11 42 42 H 0.97002 * 120.00396 * 95.14717 * 19 2 1 43 43 H 1.09002 * 109.47138 * 53.74705 * 22 20 19 44 44 H 1.09002 * 109.47406 * 293.75245 * 22 20 19 45 45 H 1.08994 * 109.91684 * 26.49096 * 24 23 22 46 46 H 1.09000 * 110.07820 * 265.29035 * 24 23 22 47 47 H 1.08992 * 110.31091 * 239.86012 * 25 24 23 48 48 H 1.09005 * 110.38858 * 117.73231 * 25 24 23 49 49 H 1.09000 * 109.46843 * 58.54608 * 28 26 25 50 50 H 1.08993 * 109.46947 * 298.54731 * 28 26 25 51 51 H 1.09000 * 109.46732 * 178.54765 * 28 26 25 52 52 H 1.09003 * 110.67154 * 81.84483 * 29 23 22 53 53 H 1.09003 * 110.66841 * 318.71085 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5043 -0.8232 -1.1921 6 6 4.0003 -1.8213 -2.1491 7 6 4.1325 0.4846 -1.4226 8 6 5.6054 0.3955 -1.1166 9 8 6.0848 -0.6543 -0.7436 10 7 6.3899 1.4823 -1.2573 11 6 7.7300 1.4011 -0.9793 12 1 8.1570 0.4660 -0.6480 13 6 8.5387 2.5217 -1.1239 14 7 8.0191 3.6592 -1.5276 15 14 10.3644 2.4111 -0.7445 16 1 10.9934 1.3981 -1.6295 17 1 10.9989 3.7337 -0.9758 18 1 10.5520 2.0140 0.6741 19 7 2.0182 -0.6906 1.1962 20 6 2.1441 -0.0189 2.3579 21 8 1.8528 1.1571 2.4130 22 6 2.6468 -0.7291 3.5883 23 7 2.8351 0.2437 4.6727 24 6 3.4168 -0.4023 5.8693 25 6 4.3377 0.6341 6.5396 26 6 4.2636 1.8853 5.6344 27 1 3.5360 2.5987 6.0214 28 6 5.6406 2.5384 5.4998 29 6 3.7977 1.3031 4.2762 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6078 -1.7209 -1.2935 34 1 1.7492 -0.1599 -2.1371 35 1 3.8084 -1.4769 -3.1653 36 1 5.0725 -1.9584 -2.0083 37 1 3.4881 -2.7690 -1.9838 38 1 3.9946 0.7754 -2.4640 39 1 3.6710 1.2288 -0.7735 40 1 6.0064 2.3220 -1.5552 41 1 8.5836 4.4416 -1.6281 42 1 2.2509 -1.6312 1.1523 43 1 3.5977 -1.2133 3.3653 44 1 1.9200 -1.4807 3.8965 45 1 3.9957 -1.2775 5.5744 46 1 2.6249 -0.6960 6.5583 47 1 5.3602 0.2592 6.5837 48 1 3.9782 0.8700 7.5412 49 1 6.3452 1.8183 5.0839 50 1 5.9874 2.8606 6.4816 51 1 5.5701 3.4017 4.8381 52 1 3.3026 2.0689 3.6790 53 1 4.6394 0.8742 3.7325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268746883.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:13 Heat of formation + Delta-G solvation = -86.797395 kcal Electronic energy + Delta-G solvation = -31417.667442 eV Core-core repulsion = 27323.234117 eV Total energy + Delta-G solvation = -4094.433325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.16317 -40.39840 -39.53717 -38.17408 -36.11286 -35.50704 -34.41966 -33.29040 -32.18694 -30.64007 -29.61180 -28.30833 -27.95468 -26.61664 -26.07285 -23.77399 -22.50756 -21.78516 -21.34853 -21.10805 -20.84297 -19.85839 -18.28843 -17.82107 -17.37412 -16.88553 -16.70283 -16.62821 -16.42755 -16.12076 -15.81293 -15.41542 -15.27483 -15.15713 -14.94261 -14.57144 -14.37413 -14.15024 -13.93007 -13.73396 -13.58219 -13.47007 -13.38483 -13.11863 -12.98840 -12.94318 -12.86415 -12.78386 -12.64575 -12.48625 -12.40021 -12.23434 -12.15048 -11.83683 -11.69643 -11.61814 -11.45232 -11.45025 -10.66954 -10.28389 -10.01892 -9.92816 -9.43422 -9.21298 -8.47330 -5.96297 1.37247 1.38672 1.49868 1.73882 2.03762 2.20257 2.27130 2.77212 3.05475 3.19198 3.36233 3.61783 3.72528 3.80730 3.92871 4.03509 4.13852 4.18780 4.26436 4.29736 4.33436 4.36110 4.41872 4.48784 4.50465 4.57360 4.58094 4.65521 4.72042 4.74778 4.77287 4.78637 4.81187 4.84422 4.99681 5.03897 5.08369 5.20464 5.22840 5.25867 5.31220 5.37211 5.38770 5.64805 5.81855 5.86553 5.94675 6.05266 6.21067 6.58662 6.71488 7.11430 7.41143 7.54659 8.09998 8.70105 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006997 B = 0.004278 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4000.839251 B = 6542.849454 C = 9586.517448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 H 0.053 0.947 4 C 0.050 3.950 5 N -0.528 5.528 6 C 0.028 3.972 7 C 0.058 3.942 8 C 0.443 3.557 9 O -0.609 6.609 10 N -0.577 5.577 11 C -0.331 4.331 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.922 5.922 15 Si 0.991 3.009 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.699 5.699 20 C 0.509 3.491 21 O -0.571 6.571 22 C 0.029 3.971 23 N -0.511 5.511 24 C 0.033 3.967 25 C -0.122 4.122 26 C -0.093 4.093 27 H 0.082 0.918 28 C -0.142 4.142 29 C 0.042 3.958 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.393 0.607 41 H 0.277 0.723 42 H 0.411 0.589 43 H 0.064 0.936 44 H 0.133 0.867 45 H 0.051 0.949 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.091 0.909 49 H 0.044 0.956 50 H 0.077 0.923 51 H 0.045 0.955 52 H 0.068 0.932 53 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 -9.168 8.487 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.071 0.929 4 C -0.078 4.078 5 N -0.253 5.253 6 C -0.119 4.119 7 C -0.073 4.073 8 C 0.231 3.769 9 O -0.495 6.495 10 N -0.214 5.214 11 C -0.460 4.460 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.814 3.186 16 H -0.194 1.194 17 H -0.195 1.195 18 H -0.198 1.198 19 N -0.350 5.350 20 C 0.295 3.705 21 O -0.451 6.451 22 C -0.102 4.102 23 N -0.235 5.235 24 C -0.094 4.094 25 C -0.160 4.160 26 C -0.113 4.113 27 H 0.101 0.899 28 C -0.200 4.200 29 C -0.086 4.086 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.226 0.774 41 H 0.086 0.914 42 H 0.247 0.753 43 H 0.082 0.918 44 H 0.151 0.849 45 H 0.070 0.930 46 H 0.116 0.884 47 H 0.090 0.910 48 H 0.109 0.891 49 H 0.063 0.937 50 H 0.096 0.904 51 H 0.064 0.936 52 H 0.087 0.913 53 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -14.828 -8.813 9.288 19.591 hybrid contribution 1.642 0.344 -1.350 2.154 sum -13.186 -8.469 7.938 17.567 Atomic orbital electron populations 1.22034 0.93120 1.03301 1.02342 1.20955 0.94681 0.96078 0.84265 0.92908 1.22568 0.86280 1.02817 0.96151 1.61496 1.05564 1.05667 1.52527 1.22437 1.01778 0.95448 0.92284 1.21713 0.91484 0.93353 1.00742 1.20683 0.89252 0.84063 0.82932 1.90438 1.76470 1.30237 1.52310 1.41961 1.08162 1.11372 1.59899 1.19598 0.84470 0.97790 1.44170 0.90230 1.26038 1.04582 0.94133 0.96532 1.69676 1.38451 1.01339 1.46847 0.85020 0.76876 0.77823 0.78831 1.19421 1.19521 1.19791 1.45715 1.66326 1.14597 1.08392 1.20800 0.77219 0.87069 0.85374 1.90645 1.51315 1.17515 1.85589 1.22251 1.02411 0.95492 0.90050 1.64609 1.43928 1.10496 1.04492 1.23004 0.97893 0.96433 0.92050 1.22490 0.99866 0.94017 0.99624 1.22051 0.97386 0.97636 0.94189 0.89918 1.21760 0.95630 1.00200 1.02394 1.23258 0.92707 0.95159 0.97499 0.93878 0.90270 0.90293 0.87126 0.91852 0.95518 0.92799 0.89146 0.91683 0.89480 0.77426 0.91367 0.75260 0.91804 0.84924 0.93048 0.88430 0.90966 0.89058 0.93690 0.90368 0.93562 0.91340 0.96352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.48 71.98 0.68 -2.01 16 2 C 0.15 3.38 2.52 44.99 0.11 3.49 16 3 H 0.05 1.60 6.23 -2.39 -0.01 1.59 16 4 C 0.05 1.01 4.53 86.30 0.39 1.40 16 5 N -0.53 -15.60 4.18 -927.05 -3.88 -19.47 16 6 C 0.03 0.80 9.19 127.69 1.17 1.97 16 7 C 0.06 2.10 5.30 85.56 0.45 2.55 16 8 C 0.44 21.47 7.52 87.66 0.66 22.13 16 9 O -0.61 -33.06 13.88 -3.05 -0.04 -33.11 16 10 N -0.58 -30.58 5.29 -306.99 -1.62 -32.20 16 11 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 12 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 13 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 14 N -0.92 -51.18 13.05 21.66 0.28 -50.90 16 15 Si 0.99 43.66 29.55 68.60 2.03 45.68 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 N -0.70 -16.86 4.81 -442.54 -2.13 -18.99 16 20 C 0.51 15.01 7.42 87.66 0.65 15.66 16 21 O -0.57 -21.51 13.92 -3.02 -0.04 -21.56 16 22 C 0.03 0.71 5.32 85.56 0.46 1.16 16 23 N -0.51 -13.70 5.12 -887.55 -4.54 -18.24 16 24 C 0.03 0.67 6.70 86.45 0.58 1.25 16 25 C -0.12 -2.39 6.51 31.47 0.20 -2.19 16 26 C -0.09 -2.35 3.66 -9.59 -0.04 -2.38 16 27 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 28 C -0.14 -3.55 9.15 71.98 0.66 -2.89 16 29 C 0.04 1.32 5.01 86.65 0.43 1.76 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.62 7.86 -2.39 -0.02 1.60 16 34 H 0.06 1.15 8.05 -2.38 -0.02 1.13 16 35 H 0.03 0.69 8.12 -2.39 -0.02 0.67 16 36 H 0.05 2.03 5.93 -2.38 -0.01 2.02 16 37 H 0.09 1.96 7.94 -2.39 -0.02 1.94 16 38 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 39 H 0.09 3.15 6.50 -2.39 -0.02 3.13 16 40 H 0.39 20.22 7.90 -92.70 -0.73 19.49 16 41 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.41 8.20 8.60 -92.71 -0.80 7.41 16 43 H 0.06 1.57 7.98 -2.39 -0.02 1.55 16 44 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 0.97 7.67 -2.39 -0.02 0.95 16 46 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.36 7.85 -2.39 -0.02 1.35 16 48 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 50 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 51 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.07 2.61 6.40 -2.39 -0.02 2.59 16 53 H 0.02 0.66 7.91 -2.39 -0.02 0.64 16 Total: -1.00 -74.09 418.52 -2.87 -76.95 By element: Atomic # 1 Polarization: 49.09 SS G_CDS: -0.62 Total: 48.47 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 7.70 Total: 23.36 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -11.89 Total: -139.81 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.08 Total: -54.66 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.09 -2.87 -76.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268746883.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.844 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds