Wall clock time and date at job start Sat Apr 11 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47171 * 2 1 4 4 C 1.52995 * 109.47223 * 120.00658 * 2 1 3 5 5 N 1.46901 * 109.47356 * 175.00244 * 4 2 1 6 6 C 1.46902 * 111.00040 * 66.04114 * 5 4 2 7 7 C 1.46899 * 111.00103 * 189.99936 * 5 4 2 8 8 C 1.50703 * 109.47107 * 169.99758 * 7 5 4 9 9 O 1.21286 * 120.00016 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 5 11 11 C 1.37091 * 120.00108 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00333 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99712 * 179.97438 * 11 10 8 14 14 N 1.31411 * 120.00268 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99720 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47171 * 89.99944 * 15 13 11 17 17 H 1.48508 * 109.46868 * 210.00078 * 15 13 11 18 18 H 1.48507 * 109.47197 * 329.99774 * 15 13 11 19 19 N 1.46506 * 109.47009 * 240.00655 * 2 1 3 20 20 C 1.34769 * 120.00111 * 84.99822 * 19 2 1 21 21 O 1.21279 * 120.00357 * 0.02562 * 20 19 2 22 22 C 1.50702 * 119.99877 * 179.97438 * 20 19 2 23 23 C 1.53006 * 109.47295 * 180.02562 * 22 20 19 24 24 H 1.09002 * 110.28564 * 52.87054 * 23 22 20 25 25 C 1.54252 * 110.32540 * 175.00192 * 23 22 20 26 26 C 1.54380 * 105.06190 * 118.89359 * 25 23 22 27 27 N 1.48561 * 104.59184 * 23.85289 * 26 25 23 28 28 C 1.46904 * 110.99918 * 200.95866 * 27 26 25 29 29 C 1.48559 * 104.22383 * 320.51402 * 27 26 25 30 30 H 1.08994 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47024 * 299.99571 * 1 2 3 32 32 H 1.08996 * 109.46755 * 59.99741 * 1 2 3 33 33 H 1.08998 * 109.47352 * 54.99611 * 4 2 1 34 34 H 1.09007 * 109.47234 * 294.99826 * 4 2 1 35 35 H 1.09005 * 109.46528 * 183.95480 * 6 5 4 36 36 H 1.09000 * 109.46785 * 303.95569 * 6 5 4 37 37 H 1.08997 * 109.47044 * 63.96124 * 6 5 4 38 38 H 1.09002 * 109.47043 * 289.99738 * 7 5 4 39 39 H 1.09001 * 109.47354 * 49.99799 * 7 5 4 40 40 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 41 41 H 0.96996 * 119.99832 * 179.97438 * 14 13 11 42 42 H 0.96999 * 119.99573 * 264.99897 * 19 2 1 43 43 H 1.08995 * 109.47627 * 300.00055 * 22 20 19 44 44 H 1.09004 * 109.47207 * 60.00182 * 22 20 19 45 45 H 1.08995 * 110.32683 * 237.78819 * 25 23 22 46 46 H 1.09004 * 110.32502 * 359.97438 * 25 23 22 47 47 H 1.08995 * 110.41200 * 142.62860 * 26 25 23 48 48 H 1.08993 * 110.41174 * 264.95760 * 26 25 23 49 49 H 1.08995 * 109.46826 * 60.12738 * 28 27 26 50 50 H 1.09003 * 109.47208 * 180.12681 * 28 27 26 51 51 H 1.09003 * 109.46852 * 300.12729 * 28 27 26 52 52 H 1.09000 * 110.41335 * 280.70565 * 29 27 26 53 53 H 1.08996 * 110.41020 * 158.26134 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5041 -0.8267 1.1903 6 6 4.1311 0.4993 1.2720 7 6 4.0108 -1.7146 2.2453 8 6 5.4725 -1.9939 2.0076 9 8 6.0365 -1.5022 1.0531 10 7 6.1528 -2.7909 2.8552 11 6 7.4827 -3.0446 2.6393 12 1 7.9851 -2.6061 1.7898 13 6 8.1841 -3.8659 3.5135 14 7 7.5727 -4.3999 4.5469 15 14 9.9963 -4.2110 3.2197 16 1 10.8147 -3.1874 3.9181 17 1 10.3351 -5.5583 3.7446 18 1 10.2798 -4.1618 1.7627 19 7 2.0184 -0.6905 -1.1963 20 6 2.1470 -0.0181 -2.3572 21 8 1.8590 1.1588 -2.4115 22 6 2.6499 -0.7283 -3.5875 23 6 2.7018 0.2550 -4.7586 24 1 3.2692 1.1435 -4.4812 25 6 3.3311 -0.4179 -5.9958 26 6 2.2298 -0.3795 -7.0770 27 7 1.3509 0.7491 -6.6761 28 6 0.0195 0.6210 -7.2836 29 6 1.2732 0.6434 -5.1963 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6054 -1.7199 1.2950 34 1 1.7517 -0.1585 2.1370 35 1 5.2102 0.3986 1.1557 36 1 3.7380 1.1363 0.4797 37 1 3.9102 0.9465 2.2411 38 1 3.8858 -1.2340 3.2156 39 1 3.4546 -2.6518 2.2296 40 1 5.7016 -3.1845 3.6184 41 1 8.0623 -4.9735 5.1568 42 1 2.2490 -1.6317 -1.1528 43 1 3.6492 -1.1201 -3.3981 44 1 1.9777 -1.5506 -3.8327 45 1 4.2062 0.1412 -6.3269 46 1 3.6034 -1.4487 -5.7687 47 1 2.6664 -0.1914 -8.0578 48 1 1.6708 -1.3152 -7.0836 49 1 -0.4409 -0.3113 -6.9566 50 1 -0.6029 1.4612 -6.9755 51 1 0.1144 0.6181 -8.3695 52 1 0.5631 -0.1314 -4.9072 53 1 0.9896 1.6017 -4.7612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268750607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:30 Heat of formation + Delta-G solvation = -91.185258 kcal Electronic energy + Delta-G solvation = -30289.257676 eV Core-core repulsion = 26194.634079 eV Total energy + Delta-G solvation = -4094.623597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12263 -40.34597 -39.61155 -38.23023 -36.08679 -35.47080 -34.35318 -33.24464 -32.18777 -30.58587 -29.47807 -28.20650 -27.99970 -26.64689 -25.90823 -23.98302 -22.30957 -22.00423 -21.24276 -20.93593 -20.74433 -19.82346 -18.27529 -17.72160 -17.33776 -16.77369 -16.65764 -16.49592 -16.36078 -16.15741 -15.97577 -15.60305 -15.21761 -15.07522 -15.02173 -14.84549 -14.32526 -14.14806 -13.91389 -13.65093 -13.55528 -13.38388 -13.18843 -13.09236 -12.94256 -12.88611 -12.73396 -12.64420 -12.44168 -12.40852 -12.36766 -12.30629 -12.11549 -12.09245 -11.78919 -11.68544 -11.44445 -11.43700 -10.69253 -10.24878 -9.96833 -9.90200 -9.46989 -9.20318 -8.44370 -5.92128 1.38566 1.42531 1.54630 1.79144 2.10001 2.28877 2.35712 2.77336 3.10233 3.22966 3.45112 3.65006 3.70820 3.80789 3.89968 4.10112 4.17619 4.22985 4.28146 4.35587 4.39871 4.42914 4.48982 4.53148 4.54526 4.56249 4.58338 4.60539 4.68146 4.71259 4.75055 4.80203 4.82824 4.87934 4.96352 4.98812 5.07753 5.08284 5.18600 5.25796 5.30019 5.34789 5.43532 5.66863 5.87106 5.89106 6.07102 6.07323 6.19931 6.64269 6.72559 7.16639 7.41742 7.60977 8.17321 8.72910 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.002210 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.910547 B =12663.905797 C =14273.838291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.061 0.939 4 C 0.047 3.953 5 N -0.526 5.526 6 C 0.031 3.969 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.613 6.613 10 N -0.576 5.576 11 C -0.328 4.328 12 H 0.078 0.922 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.989 3.011 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.703 5.703 20 C 0.509 3.491 21 O -0.584 6.584 22 C -0.128 4.128 23 C -0.074 4.074 24 H 0.061 0.939 25 C -0.120 4.120 26 C 0.032 3.968 27 N -0.539 5.539 28 C 0.014 3.986 29 C 0.053 3.947 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.396 0.604 41 H 0.276 0.724 42 H 0.411 0.589 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.033 0.967 50 H 0.066 0.934 51 H 0.079 0.921 52 H 0.044 0.956 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.917 3.326 -14.150 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.081 4.081 5 N -0.250 5.250 6 C -0.117 4.117 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.499 6.499 10 N -0.214 5.214 11 C -0.458 4.458 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.814 3.186 16 H -0.199 1.199 17 H -0.196 1.196 18 H -0.198 1.198 19 N -0.353 5.353 20 C 0.297 3.703 21 O -0.465 6.465 22 C -0.168 4.168 23 C -0.094 4.094 24 H 0.079 0.921 25 C -0.158 4.158 26 C -0.095 4.095 27 N -0.263 5.263 28 C -0.135 4.135 29 C -0.075 4.075 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.247 0.753 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.052 0.948 50 H 0.085 0.915 51 H 0.098 0.902 52 H 0.062 0.938 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.362 4.663 -15.289 23.600 hybrid contribution 0.438 -0.930 1.599 1.901 sum -16.924 3.733 -13.690 22.086 Atomic orbital electron populations 1.22046 0.93384 1.03128 1.02390 1.20915 0.94478 0.96295 0.84103 0.92092 1.22572 0.86363 1.02536 0.96589 1.61496 1.05495 1.11362 1.46678 1.22342 1.00582 0.89484 0.99304 1.21771 0.92133 0.99423 0.94000 1.20814 0.89967 0.82185 0.84078 1.90474 1.71606 1.55094 1.32750 1.41935 1.09840 1.43791 1.25803 1.19608 0.86581 1.28451 1.11155 0.90449 1.25984 1.04201 0.96087 0.95075 1.69664 1.38727 1.33032 1.14748 0.84977 0.77366 0.77889 0.78409 1.19922 1.19605 1.19803 1.45859 1.66092 1.14604 1.08757 1.21041 0.76666 0.87004 0.85582 1.90655 1.52311 1.17615 1.85916 1.21827 1.04223 0.99286 0.91501 1.21555 0.96160 0.97698 0.94006 0.92071 1.22410 0.98140 1.01729 0.93478 1.23169 0.94384 0.92453 0.99542 1.65359 1.12286 1.42698 1.05936 1.22526 0.89632 1.00627 1.00680 1.23001 0.96237 1.00419 0.87876 0.90726 0.90345 0.93597 0.87881 0.92037 0.92695 0.91931 0.95384 0.91669 0.86496 0.77058 0.91423 0.75331 0.87816 0.86763 0.90963 0.89269 0.89461 0.92798 0.94842 0.91545 0.90220 0.93786 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.48 71.98 0.68 -1.81 16 2 C 0.15 3.11 2.36 44.99 0.11 3.22 16 3 H 0.06 1.63 6.15 -2.39 -0.01 1.61 16 4 C 0.05 0.94 4.52 86.30 0.39 1.33 16 5 N -0.53 -15.27 4.22 -927.03 -3.92 -19.19 16 6 C 0.03 1.01 9.01 127.69 1.15 2.16 16 7 C 0.06 1.81 5.45 85.56 0.47 2.28 16 8 C 0.44 20.05 7.51 87.66 0.66 20.70 16 9 O -0.61 -32.61 13.89 -3.05 -0.04 -32.66 16 10 N -0.58 -28.57 5.29 -306.99 -1.62 -30.19 16 11 C -0.33 -18.26 9.68 84.04 0.81 -17.44 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 14 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 15 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 N -0.70 -15.24 4.80 -442.53 -2.12 -17.36 16 20 C 0.51 12.65 7.60 87.66 0.67 13.32 16 21 O -0.58 -18.71 14.61 -3.03 -0.04 -18.75 16 22 C -0.13 -2.43 4.88 29.85 0.15 -2.29 16 23 C -0.07 -1.56 2.66 -9.90 -0.03 -1.59 16 24 H 0.06 1.62 7.91 -2.39 -0.02 1.60 16 25 C -0.12 -1.97 6.65 31.49 0.21 -1.76 16 26 C 0.03 0.50 6.49 86.45 0.56 1.06 16 27 N -0.54 -10.56 5.66 -907.62 -5.14 -15.70 16 28 C 0.01 0.21 9.53 127.69 1.22 1.43 16 29 C 0.05 1.13 5.18 86.45 0.45 1.58 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.61 7.93 -2.39 -0.02 1.59 16 34 H 0.06 1.09 8.12 -2.38 -0.02 1.07 16 35 H 0.05 2.26 5.88 -2.38 -0.01 2.24 16 36 H 0.06 1.98 6.40 -2.39 -0.02 1.96 16 37 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 39 H 0.12 3.04 7.93 -2.39 -0.02 3.02 16 40 H 0.40 18.60 7.90 -92.70 -0.73 17.87 16 41 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 42 H 0.41 7.81 8.60 -92.71 -0.80 7.01 16 43 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.11 1.57 7.98 -2.38 -0.02 1.55 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.09 1.18 7.71 -2.38 -0.02 1.16 16 47 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 0.72 7.97 -2.39 -0.02 0.70 16 49 H 0.03 0.46 7.97 -2.39 -0.02 0.44 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.04 0.88 7.51 -2.39 -0.02 0.86 16 53 H 0.06 1.67 7.74 -2.39 -0.02 1.65 16 Total: -1.00 -71.10 419.48 -3.25 -74.35 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.63 Total: 41.61 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 7.96 Total: 21.93 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -12.52 Total: -131.00 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.09 Total: -51.41 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.10 -3.25 -74.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268750607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.837 kcal (2) G-P(sol) polarization free energy of solvation -71.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds