Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46903 * 109.47092 * 179.97438 * 5 4 2 7 7 C 1.46898 * 111.00201 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47125 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99983 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99660 * 180.02562 * 8 7 6 11 11 C 1.37105 * 119.99884 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99576 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00154 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99905 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00177 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46968 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47325 * 120.00056 * 15 13 11 18 18 H 1.48503 * 109.46909 * 240.00516 * 15 13 11 19 19 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 20 20 C 1.34777 * 119.99525 * 84.99977 * 19 2 1 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 2 22 22 C 1.50700 * 119.99675 * 179.72583 * 20 19 2 23 23 H 1.09003 * 109.46467 * 320.29718 * 22 20 19 24 24 C 1.53038 * 109.46618 * 80.27790 * 22 20 19 25 25 C 1.53118 * 109.28213 * 179.19503 * 24 22 20 26 26 C 1.53123 * 109.15812 * 302.34594 * 25 24 22 27 27 C 1.53038 * 109.27851 * 57.65226 * 26 25 24 28 28 N 1.46847 * 109.52695 * 300.82069 * 27 26 25 29 29 C 1.46898 * 110.99788 * 185.83871 * 28 27 26 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 32 32 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 33 33 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 34 34 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 35 35 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 36 36 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 37 37 H 1.00904 * 110.99825 * 303.96096 * 6 5 4 38 38 H 1.08997 * 109.47108 * 300.00338 * 7 6 5 39 39 H 1.09007 * 109.46810 * 60.00256 * 7 6 5 40 40 H 0.96998 * 120.00421 * 0.02562 * 10 8 7 41 41 H 0.97003 * 119.99938 * 179.97438 * 14 13 11 42 42 H 0.97000 * 120.00580 * 265.00723 * 19 2 1 43 43 H 1.08996 * 109.49889 * 299.14008 * 24 22 20 44 44 H 1.09002 * 109.50114 * 59.25003 * 24 22 20 45 45 H 1.08994 * 109.52044 * 62.24760 * 25 24 22 46 46 H 1.08996 * 109.52422 * 182.37781 * 25 24 22 47 47 H 1.09003 * 109.49866 * 177.59361 * 26 25 24 48 48 H 1.08998 * 109.50415 * 297.71382 * 26 25 24 49 49 H 1.09008 * 109.46082 * 60.84043 * 27 26 25 50 50 H 1.08994 * 109.46230 * 180.80998 * 27 26 25 51 51 H 1.08992 * 109.47273 * 295.78727 * 29 28 27 52 52 H 1.09000 * 109.47066 * 55.79001 * 29 28 27 53 53 H 1.09005 * 109.46718 * 175.78852 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0544 -1.3050 2.5137 7 6 5.5180 -1.2225 2.6087 8 6 5.9823 -1.9422 3.8486 9 8 5.1736 -2.4721 4.5809 10 7 7.2962 -1.9969 4.1438 11 6 7.7186 -2.6512 5.2722 12 1 6.9984 -3.1231 5.9242 13 6 9.0732 -2.7082 5.5762 14 7 9.9494 -2.1344 4.7825 15 14 9.6487 -3.6003 7.1132 16 1 8.4743 -4.1570 7.8315 17 1 10.5639 -4.7054 6.7307 18 1 10.3656 -2.6480 7.9990 19 7 2.0185 -0.6908 -1.1960 20 6 2.1472 -0.0185 -2.3570 21 8 1.8591 1.1584 -2.4116 22 6 2.6554 -0.7275 -3.5859 23 1 3.4602 -1.4074 -3.3062 24 6 1.5145 -1.5232 -4.2241 25 6 2.0304 -2.2255 -5.4831 26 6 2.5963 -1.1785 -6.4465 27 6 3.7058 -0.3928 -5.7438 28 7 3.1619 0.2608 -4.5467 29 6 4.1639 1.1356 -3.9233 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 -0.3633 0.5137 -0.8900 33 1 1.6053 -0.2615 2.1370 34 1 1.7516 -1.7714 1.2059 35 1 3.9995 -1.0728 0.4262 36 1 3.8531 0.4371 1.3574 37 1 3.6164 -0.9393 3.3460 38 1 5.9658 -1.6870 1.7302 39 1 5.8203 -0.1765 2.6606 40 1 7.9429 -1.5728 3.5584 41 1 10.8951 -2.1738 4.9950 42 1 2.2491 -1.6319 -1.1524 43 1 1.1493 -2.2671 -3.5161 44 1 0.7036 -0.8457 -4.4917 45 1 2.8148 -2.9316 -5.2107 46 1 1.2108 -2.7593 -5.9642 47 1 3.0040 -1.6763 -7.3263 48 1 1.8025 -0.4956 -6.7490 49 1 4.5057 -1.0743 -5.4539 50 1 4.1011 0.3631 -6.4223 51 1 5.0001 0.5341 -3.5671 52 1 4.5223 1.8579 -4.6568 53 1 3.7127 1.6640 -3.0834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272865544.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -105.826847 kcal Electronic energy + Delta-G solvation = -29856.445789 eV Core-core repulsion = 25761.187285 eV Total energy + Delta-G solvation = -4095.258504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47253 -40.18608 -39.28751 -37.79474 -36.29388 -35.71155 -34.44338 -33.32697 -33.12580 -31.59281 -30.26328 -27.84670 -27.76651 -25.86059 -25.13882 -23.91154 -23.27685 -22.10299 -21.46609 -21.08144 -20.62837 -19.92116 -18.31783 -17.84148 -17.51034 -17.04103 -16.52755 -16.39654 -16.32073 -15.96262 -15.78554 -15.44282 -15.38910 -15.26692 -15.03407 -14.83721 -14.43837 -14.28006 -13.97620 -13.90303 -13.82491 -13.56866 -13.50756 -13.24923 -13.01829 -12.94248 -12.82019 -12.68797 -12.42446 -12.35800 -12.20818 -12.12330 -12.11267 -11.85986 -11.74646 -11.62823 -11.52646 -11.34046 -10.57029 -10.37411 -10.06401 -10.03213 -9.37038 -9.31212 -8.48182 -5.97129 1.36009 1.41530 1.55840 1.61095 2.02942 2.08800 2.28090 2.86818 2.93893 3.18946 3.46811 3.65606 3.81119 3.93056 3.97973 4.03606 4.09151 4.09407 4.16325 4.30056 4.31553 4.41650 4.44848 4.49412 4.49786 4.51283 4.57845 4.61495 4.66594 4.75801 4.81675 4.84345 4.90732 4.96955 5.02771 5.04015 5.08175 5.18066 5.20781 5.23939 5.32325 5.40027 5.44789 5.57491 5.86551 5.93375 6.07706 6.08803 6.37766 6.58047 6.59429 7.10957 7.28537 7.54202 8.09075 8.69433 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.001899 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.706501 B =14740.468914 C =15867.786260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.150 3.850 3 H 0.069 0.931 4 C -0.114 4.114 5 C 0.063 3.937 6 N -0.680 5.680 7 C 0.064 3.936 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.333 4.333 12 H 0.080 0.920 13 C -0.015 4.015 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.271 1.271 19 N -0.713 5.713 20 C 0.517 3.483 21 O -0.562 6.562 22 C 0.069 3.931 23 H 0.073 0.927 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.117 4.117 27 C 0.053 3.947 28 N -0.537 5.537 29 C 0.018 3.982 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.345 0.655 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.412 0.588 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.062 0.938 49 H 0.039 0.961 50 H 0.082 0.918 51 H 0.025 0.975 52 H 0.075 0.925 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 2.642 -22.787 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.312 5.312 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.508 6.508 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.196 1.196 19 N -0.366 5.366 20 C 0.304 3.696 21 O -0.440 6.440 22 C -0.042 4.042 23 H 0.090 0.910 24 C -0.141 4.141 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.074 4.074 28 N -0.263 5.263 29 C -0.130 4.130 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.164 0.836 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.248 0.752 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.081 0.919 49 H 0.057 0.943 50 H 0.100 0.900 51 H 0.044 0.956 52 H 0.094 0.906 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.976 2.825 -22.764 27.954 hybrid contribution 1.815 0.149 1.115 2.136 sum -14.160 2.975 -21.649 26.040 Atomic orbital electron populations 1.22089 0.94217 1.02876 1.02193 1.20849 0.94582 0.96487 0.83549 0.91285 1.21773 0.93853 1.02397 0.97149 1.22014 0.95984 0.95796 0.92781 1.60100 1.03658 1.61050 1.06379 1.21524 0.90330 0.98935 0.96014 1.20853 0.82427 0.85073 0.89118 1.90487 1.54196 1.51987 1.54153 1.41954 1.06348 1.49232 1.23558 1.19716 0.92372 1.31998 1.02178 0.90225 1.26069 0.95190 0.98111 1.02047 1.69683 1.02935 1.44566 1.39003 0.84854 0.78073 0.78004 0.77307 1.19707 1.19571 1.19632 1.46105 1.66902 1.14651 1.08984 1.20770 0.77174 0.86920 0.84773 1.90663 1.50665 1.17440 1.85224 1.21681 0.99105 0.93073 0.90376 0.90967 1.21547 0.95877 0.98321 0.98355 1.21587 1.01459 0.97538 0.94916 1.21622 0.98016 0.97500 0.98363 1.22231 0.96390 0.97533 0.91221 1.61669 1.37424 1.20486 1.06700 1.22490 0.92948 0.96992 1.00554 0.91144 0.90665 0.93728 0.89642 0.89638 0.90646 0.95443 0.83649 0.87925 0.92033 0.77015 0.91291 0.75186 0.89393 0.92071 0.91110 0.90006 0.89623 0.91888 0.94320 0.90004 0.95608 0.90596 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 71.98 0.68 -1.70 16 2 C 0.15 2.54 2.57 45.00 0.12 2.66 16 3 H 0.07 1.47 7.58 -2.39 -0.02 1.45 16 4 C -0.11 -1.92 5.01 30.60 0.15 -1.77 16 5 C 0.06 1.36 5.57 86.30 0.48 1.84 16 6 N -0.68 -20.36 6.12 -517.92 -3.17 -23.53 16 7 C 0.06 2.18 6.17 85.56 0.53 2.71 16 8 C 0.44 20.72 7.82 87.66 0.69 21.40 16 9 O -0.62 -34.19 15.78 -3.05 -0.05 -34.24 16 10 N -0.57 -29.41 5.29 -306.99 -1.62 -31.03 16 11 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 14 N -0.92 -49.62 13.05 21.66 0.28 -49.33 16 15 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 N -0.71 -11.18 4.53 -442.52 -2.00 -13.18 16 20 C 0.52 10.47 6.23 87.66 0.55 11.01 16 21 O -0.56 -15.95 14.19 -3.04 -0.04 -15.99 16 22 C 0.07 1.12 2.24 44.19 0.10 1.22 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 24 C -0.10 -1.29 5.36 30.65 0.16 -1.13 16 25 C -0.12 -1.11 6.00 30.67 0.18 -0.93 16 26 C -0.12 -1.25 6.09 30.65 0.19 -1.06 16 27 C 0.05 0.72 5.46 86.33 0.47 1.19 16 28 N -0.54 -9.94 4.51 -901.59 -4.06 -14.00 16 29 C 0.02 0.35 9.10 127.69 1.16 1.52 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.54 7.75 -2.39 -0.02 1.52 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.34 10.87 8.43 -89.69 -0.76 10.11 16 38 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 41 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.41 4.70 8.60 -92.71 -0.80 3.90 16 43 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 50 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 51 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 53 H 0.06 1.60 5.63 -2.38 -0.01 1.59 16 Total: -1.00 -71.99 422.58 -3.28 -75.27 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -1.38 Total: 42.69 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 6.74 Total: 18.58 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -10.58 Total: -131.09 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.09 Total: -50.23 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.99 -3.28 -75.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272865544.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.560 kcal (2) G-P(sol) polarization free energy of solvation -71.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds