Wall clock time and date at job start Sat Apr 11 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47460 * 2 1 4 4 C 1.53002 * 109.47112 * 119.99906 * 2 1 3 5 5 N 1.46495 * 109.47368 * 65.72370 * 4 2 1 6 6 C 1.34777 * 120.00314 * 176.93237 * 5 4 2 7 7 O 1.21285 * 119.99619 * 359.72151 * 6 5 4 8 8 C 1.50702 * 120.00304 * 179.72436 * 6 5 4 9 9 H 1.08999 * 110.27073 * 331.60142 * 8 6 5 10 10 C 1.54595 * 110.30699 * 209.40449 * 8 6 5 11 11 C 1.54940 * 102.91890 * 219.12525 * 10 8 6 12 12 N 1.48534 * 103.22772 * 37.41573 * 11 10 8 13 13 C 1.46904 * 111.00190 * 200.27837 * 12 11 10 14 14 C 1.47900 * 105.81936 * 320.79357 * 12 11 10 15 15 H 1.09006 * 110.08366 * 265.88436 * 14 12 11 16 16 C 1.53001 * 109.91767 * 144.68551 * 14 12 11 17 17 N 1.46895 * 109.47260 * 239.99563 * 2 1 3 18 18 C 1.46904 * 111.00299 * 183.63588 * 17 2 1 19 19 C 1.46902 * 111.00043 * 59.68501 * 17 2 1 20 20 C 1.50693 * 109.47191 * 189.99989 * 19 17 2 21 21 O 1.21291 * 120.00746 * 359.97438 * 20 19 17 22 22 N 1.34781 * 120.00002 * 179.97438 * 20 19 17 23 23 C 1.37095 * 120.00083 * 180.02562 * 22 20 19 24 24 H 1.07997 * 119.99988 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00078 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00234 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99974 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.46975 * 89.99830 * 27 25 23 29 29 H 1.48500 * 109.47416 * 209.99835 * 27 25 23 30 30 H 1.48498 * 109.47008 * 330.00386 * 27 25 23 31 31 H 1.09010 * 109.46915 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47191 * 300.00138 * 1 2 3 33 33 H 1.08997 * 109.46996 * 60.00368 * 1 2 3 34 34 H 1.09006 * 109.46990 * 305.72436 * 4 2 1 35 35 H 1.08996 * 109.47317 * 185.72839 * 4 2 1 36 36 H 0.97001 * 119.99930 * 356.65040 * 5 4 2 37 37 H 1.08995 * 110.72751 * 337.47960 * 10 8 6 38 38 H 1.08998 * 110.72100 * 100.77305 * 10 8 6 39 39 H 1.09000 * 110.67045 * 278.98021 * 11 10 8 40 40 H 1.09000 * 110.66907 * 155.85092 * 11 10 8 41 41 H 1.08996 * 109.47026 * 177.39849 * 13 12 11 42 42 H 1.08995 * 109.46646 * 297.39591 * 13 12 11 43 43 H 1.09000 * 109.46848 * 57.39461 * 13 12 11 44 44 H 1.09003 * 109.46888 * 305.37581 * 16 14 12 45 45 H 1.08994 * 109.47467 * 65.37469 * 16 14 12 46 46 H 1.09004 * 109.47245 * 185.37916 * 16 14 12 47 47 H 1.09000 * 109.46709 * 60.48160 * 18 17 2 48 48 H 1.09001 * 109.47402 * 180.48198 * 18 17 2 49 49 H 1.08999 * 109.46717 * 300.48477 * 18 17 2 50 50 H 1.09003 * 109.46573 * 310.00079 * 19 17 2 51 51 H 1.08997 * 109.47223 * 69.99814 * 19 17 2 52 52 H 0.96996 * 120.00071 * 359.97438 * 22 20 19 53 53 H 0.96999 * 120.00498 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6674 -2.1364 1.1825 6 6 2.0666 -2.9849 2.1506 7 8 2.7385 -2.5776 3.0746 8 6 1.6781 -4.4395 2.0851 9 1 0.7345 -4.5547 1.5517 10 6 1.5673 -5.0299 3.5096 11 6 2.1721 -6.4469 3.3453 12 7 3.2880 -6.2313 2.3890 13 6 3.6772 -7.4912 1.7414 14 6 2.7853 -5.2579 1.3955 15 1 2.3763 -5.7820 0.5317 16 6 3.9198 -4.3313 0.9534 17 7 2.0197 -0.6926 -1.1993 18 6 3.4856 -0.7880 -1.1906 19 6 1.5425 -0.0309 -2.4210 20 6 1.8526 -0.8965 -3.6150 21 8 2.4161 -1.9598 -3.4633 22 7 1.5038 -0.4891 -4.8515 23 6 1.7854 -1.2768 -5.9376 24 1 2.2872 -2.2236 -5.8025 25 6 1.4253 -0.8571 -7.2123 26 7 1.6957 -1.6119 -8.2535 27 14 0.5568 0.7801 -7.4460 28 1 1.5655 1.8512 -7.6481 29 1 -0.3301 0.7048 -8.6347 30 1 -0.2553 1.0861 -6.2410 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.5953 -0.2699 2.1363 35 1 3.1251 -0.6333 1.3021 36 1 1.1299 -2.4621 0.4435 37 1 2.1507 -4.4413 4.2176 38 1 0.5249 -5.0894 3.8225 39 1 1.4354 -7.1336 2.9283 40 1 2.5486 -6.8175 4.2987 41 1 4.4644 -7.2972 1.0129 42 1 4.0431 -8.1889 2.4946 43 1 2.8128 -7.9222 1.2363 44 1 4.3710 -3.8658 1.8296 45 1 4.6742 -4.9095 0.4201 46 1 3.5222 -3.5584 0.2956 47 1 3.8078 -1.3508 -0.3145 48 1 3.8220 -1.2973 -2.0937 49 1 3.9146 0.2135 -1.1571 50 1 0.4655 0.1231 -2.3538 51 1 2.0411 0.9321 -2.5311 52 1 1.0528 0.3610 -4.9728 53 1 1.4447 -1.3188 -9.1434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275836243.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:48 Heat of formation + Delta-G solvation = -74.156531 kcal Electronic energy + Delta-G solvation = -31393.683079 eV Core-core repulsion = 27299.797903 eV Total energy + Delta-G solvation = -4093.885176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57727 -40.59017 -39.38139 -38.44125 -36.01157 -35.18927 -33.71486 -33.43404 -32.48546 -31.85721 -29.99500 -28.11363 -26.95655 -26.26104 -25.87599 -25.00274 -23.05668 -21.94458 -21.31527 -20.84025 -20.48687 -20.05762 -18.11156 -17.97471 -17.23078 -17.00709 -16.79527 -16.72950 -16.13628 -16.05664 -15.67838 -15.56525 -15.41242 -15.19892 -14.90475 -14.61726 -14.49625 -14.24851 -14.10982 -13.85124 -13.53840 -13.47665 -13.27253 -13.14561 -13.09079 -12.93206 -12.72561 -12.71170 -12.41546 -12.31020 -12.28066 -12.21296 -12.12651 -11.96632 -11.88920 -11.69048 -11.62893 -11.43012 -10.75053 -10.31204 -10.19336 -9.92249 -9.43245 -9.21591 -8.38548 -5.98518 1.31118 1.36693 1.45387 1.68935 2.01498 2.24706 2.28560 2.63277 2.97591 3.18236 3.27249 3.53832 3.56327 3.74654 3.90505 4.02634 4.12041 4.18554 4.28068 4.31284 4.35459 4.41092 4.42844 4.44813 4.48797 4.50299 4.57454 4.63303 4.69537 4.74441 4.76113 4.81675 4.82608 4.96693 4.98216 4.98829 5.02806 5.06043 5.19221 5.24170 5.28316 5.39396 5.55143 5.57175 5.89447 5.91841 6.02972 6.07139 6.19524 6.63364 6.66501 6.93009 7.34177 7.44768 8.02721 8.79193 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.002673 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.049985 B =10470.692567 C =11747.514517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.072 0.928 4 C 0.131 3.869 5 N -0.707 5.707 6 C 0.530 3.470 7 O -0.579 6.579 8 C -0.118 4.118 9 H 0.114 0.886 10 C -0.107 4.107 11 C 0.038 3.962 12 N -0.535 5.535 13 C 0.016 3.984 14 C 0.081 3.919 15 H 0.064 0.936 16 C -0.140 4.140 17 N -0.524 5.524 18 C 0.028 3.972 19 C 0.050 3.950 20 C 0.454 3.546 21 O -0.601 6.601 22 N -0.595 5.595 23 C -0.322 4.322 24 H 0.056 0.944 25 C -0.017 4.017 26 N -0.938 5.938 27 Si 0.963 3.037 28 H -0.260 1.260 29 H -0.278 1.278 30 H -0.228 1.228 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.412 0.588 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.030 0.970 50 H 0.126 0.874 51 H 0.075 0.925 52 H 0.388 0.612 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 1.144 22.797 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.037 4.037 3 H 0.090 0.910 4 C 0.006 3.994 5 N -0.359 5.359 6 C 0.317 3.683 7 O -0.459 6.459 8 C -0.140 4.140 9 H 0.132 0.868 10 C -0.145 4.145 11 C -0.089 4.089 12 N -0.259 5.259 13 C -0.133 4.133 14 C -0.028 4.028 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.249 5.249 18 C -0.120 4.120 19 C -0.081 4.081 20 C 0.241 3.759 21 O -0.484 6.484 22 N -0.237 5.237 23 C -0.451 4.451 24 H 0.074 0.926 25 C -0.215 4.215 26 N -0.579 5.579 27 Si 0.783 3.217 28 H -0.185 1.185 29 H -0.203 1.203 30 H -0.151 1.151 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.249 0.751 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.049 0.951 50 H 0.144 0.856 51 H 0.093 0.907 52 H 0.223 0.777 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.759 0.413 23.598 24.076 hybrid contribution -0.451 0.769 -1.865 2.067 sum -5.210 1.182 21.733 22.380 Atomic orbital electron populations 1.21936 0.92274 1.02960 1.03241 1.22028 0.97348 0.96269 0.88105 0.91035 1.21380 0.99617 0.81059 0.97294 1.45946 1.54870 1.08957 1.26103 1.20436 0.78507 0.88179 0.81191 1.90654 1.40283 1.79012 1.35979 1.22303 1.00431 0.91275 1.00016 0.86776 1.22475 1.02376 0.95485 0.94160 1.23293 0.91834 0.96517 0.97304 1.64689 1.36085 1.10379 1.14779 1.22547 1.00412 0.90869 0.99425 1.22182 0.93488 0.93206 0.93899 0.91781 1.21845 0.98472 0.98957 1.00519 1.61548 1.10587 1.52141 1.00630 1.22386 0.87267 0.99750 1.02596 1.21922 1.03714 0.94763 0.87691 1.20879 0.82394 0.88176 0.84411 1.90525 1.45992 1.26201 1.85730 1.42051 1.55281 1.20584 1.05802 1.18969 1.37551 1.03032 0.85566 0.92633 1.26088 0.98313 1.03122 0.93998 1.69805 1.48228 1.40165 0.99671 0.85396 0.79061 0.77326 0.79933 1.18498 1.20308 1.15134 0.92170 0.90048 0.91323 0.90171 0.92839 0.75081 0.91063 0.88474 0.92087 0.88997 0.91936 0.89979 0.94588 0.93113 0.92878 0.92349 0.91465 0.92724 0.95135 0.85648 0.90704 0.77662 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.86 71.98 0.64 -1.45 16 2 C 0.07 1.26 2.33 44.92 0.10 1.37 16 3 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 4 C 0.13 2.59 4.60 86.38 0.40 2.99 16 5 N -0.71 -15.04 4.60 -463.06 -2.13 -17.17 16 6 C 0.53 12.87 4.74 87.66 0.42 13.29 16 7 O -0.58 -18.10 15.00 -3.05 -0.05 -18.15 16 8 C -0.12 -2.38 3.38 -10.66 -0.04 -2.41 16 9 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 10 C -0.11 -1.92 6.56 31.80 0.21 -1.71 16 11 C 0.04 0.63 6.56 86.65 0.57 1.19 16 12 N -0.53 -11.37 5.18 -884.06 -4.58 -15.95 16 13 C 0.02 0.28 9.40 127.69 1.20 1.48 16 14 C 0.08 1.84 3.08 45.06 0.14 1.98 16 15 H 0.06 1.42 7.74 -2.38 -0.02 1.40 16 16 C -0.14 -3.78 8.37 71.98 0.60 -3.18 16 17 N -0.52 -13.52 3.82 -901.63 -3.45 -16.96 16 18 C 0.03 0.82 8.75 127.69 1.12 1.94 16 19 C 0.05 1.37 5.26 85.55 0.45 1.82 16 20 C 0.45 19.14 7.47 87.65 0.65 19.79 16 21 O -0.60 -31.14 13.91 -3.06 -0.04 -31.18 16 22 N -0.59 -26.78 5.09 -306.99 -1.56 -28.35 16 23 C -0.32 -18.34 10.16 84.04 0.85 -17.48 16 24 H 0.06 3.79 7.39 -2.91 -0.02 3.77 16 25 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 26 N -0.94 -55.98 13.96 21.66 0.30 -55.68 16 27 Si 0.96 37.87 27.74 68.60 1.90 39.78 16 28 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 29 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 30 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 31 H 0.06 0.94 7.16 -2.38 -0.02 0.93 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.92 6.19 -2.39 -0.01 0.91 16 34 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 35 H 0.05 1.24 6.70 -2.39 -0.02 1.23 16 36 H 0.41 8.59 7.30 -92.71 -0.68 7.91 16 37 H 0.07 1.66 6.89 -2.39 -0.02 1.64 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 0.83 7.96 -2.39 -0.02 0.81 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.04 0.58 8.01 -2.39 -0.02 0.56 16 44 H 0.05 1.55 7.11 -2.39 -0.02 1.53 16 45 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.68 6.66 -2.38 -0.02 1.66 16 47 H 0.07 1.91 6.05 -2.39 -0.01 1.89 16 48 H 0.05 2.09 5.82 -2.39 -0.01 2.07 16 49 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.13 2.73 5.82 -2.39 -0.01 2.72 16 51 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 52 H 0.39 14.40 5.76 -92.71 -0.53 13.87 16 53 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -77.12 405.45 -2.18 -79.29 By element: Atomic # 1 Polarization: 45.57 SS G_CDS: -0.35 Total: 45.22 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 7.78 Total: 19.15 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -11.42 Total: -134.11 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.09 Total: -49.33 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.90 Total: 39.78 kcal Total: -77.12 -2.18 -79.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275836243.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.137 kcal (2) G-P(sol) polarization free energy of solvation -77.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds