Wall clock time and date at job start Sat Apr 11 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 C 1.52997 * 109.47250 * 120.00041 * 2 1 3 5 5 C 1.53007 * 109.47290 * 184.99868 * 4 2 1 6 6 C 1.52997 * 109.47290 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47125 * 179.97438 * 6 5 4 8 8 C 1.46898 * 110.99614 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46984 * 180.02562 * 8 7 6 10 10 O 1.21295 * 119.99863 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.37105 * 119.99873 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99509 * 359.71860 * 12 11 9 14 14 C 1.38950 * 120.00048 * 179.72298 * 12 11 9 15 15 N 1.31413 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47025 * 59.99851 * 16 14 12 18 18 H 1.48498 * 109.46692 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46740 * 299.99493 * 16 14 12 20 20 N 1.46494 * 109.46953 * 240.00121 * 2 1 3 21 21 C 1.34777 * 120.00431 * 85.00005 * 20 2 1 22 22 O 1.21285 * 119.99411 * 0.02562 * 21 20 2 23 23 C 1.50697 * 120.00631 * 179.97438 * 21 20 2 24 24 H 1.09000 * 110.27367 * 299.36513 * 23 21 20 25 25 C 1.54593 * 110.31330 * 177.16896 * 23 21 20 26 26 C 1.54940 * 102.92398 * 219.12968 * 25 23 21 27 27 N 1.48536 * 103.22576 * 37.41107 * 26 25 23 28 28 C 1.46893 * 110.99773 * 200.27737 * 27 26 25 29 29 C 1.47897 * 105.82034 * 320.79828 * 27 26 25 30 30 H 1.09001 * 109.47217 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47382 * 300.00085 * 1 2 3 32 32 H 1.08998 * 109.47529 * 59.99442 * 1 2 3 33 33 H 1.09002 * 109.46945 * 64.99892 * 4 2 1 34 34 H 1.08996 * 109.47478 * 304.99794 * 4 2 1 35 35 H 1.08998 * 109.46615 * 60.00144 * 5 4 2 36 36 H 1.08996 * 109.46800 * 300.00341 * 5 4 2 37 37 H 1.09002 * 109.46945 * 60.00024 * 6 5 4 38 38 H 1.09000 * 109.47247 * 300.00386 * 6 5 4 39 39 H 1.00890 * 111.00276 * 303.95677 * 7 6 5 40 40 H 1.09004 * 109.47320 * 60.00702 * 8 7 6 41 41 H 1.09001 * 109.47291 * 299.99999 * 8 7 6 42 42 H 0.96996 * 119.99858 * 359.72084 * 11 9 8 43 43 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 44 44 H 0.97009 * 120.00309 * 264.99596 * 20 2 1 45 45 H 1.09003 * 110.72246 * 337.48942 * 25 23 21 46 46 H 1.09002 * 110.72560 * 100.76838 * 25 23 21 47 47 H 1.09003 * 110.66327 * 278.98015 * 26 25 23 48 48 H 1.09000 * 110.80994 * 155.91793 * 26 25 23 49 49 H 1.09004 * 109.47365 * 177.39866 * 28 27 26 50 50 H 1.08995 * 109.47503 * 297.40193 * 28 27 26 51 51 H 1.09003 * 109.47367 * 57.40230 * 28 27 26 52 52 H 1.09011 * 109.91449 * 265.97527 * 29 27 26 53 53 H 1.08999 * 110.08362 * 144.77720 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3351 2.5625 7 7 5.5390 -1.2320 2.6240 8 6 6.0652 -1.9148 3.8134 9 6 7.5666 -1.7874 3.8427 10 8 8.1417 -1.1873 2.9593 11 7 8.2704 -2.3412 4.8498 12 6 9.6363 -2.2249 4.8767 13 1 10.1484 -1.6933 4.0883 14 6 10.3614 -2.7909 5.9181 15 7 9.7380 -3.4372 6.8775 16 14 12.2224 -2.6329 5.9542 17 1 12.5965 -1.1965 5.9957 18 1 12.7538 -3.3174 7.1601 19 1 12.7960 -3.2590 4.7359 20 7 2.0182 -0.6906 -1.1961 21 6 2.1469 -0.0183 -2.3572 22 8 1.8589 1.1586 -2.4114 23 6 2.6498 -0.7285 -3.5875 24 1 3.6539 -1.1162 -3.4159 25 6 2.6423 0.2295 -4.8008 26 6 2.1695 -0.6833 -5.9601 27 7 1.1565 -1.5564 -5.3137 28 6 0.9403 -2.7805 -6.0963 29 6 1.6935 -1.8725 -3.9725 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7516 -1.7715 1.2055 34 1 1.6054 -0.2618 2.1369 35 1 3.8531 0.4370 1.3573 36 1 3.9994 -1.0728 0.4259 37 1 3.7865 -2.3853 2.5184 38 1 3.6403 -0.8760 3.4505 39 1 5.9626 -1.5928 1.7824 40 1 5.7904 -2.9690 3.7786 41 1 5.6448 -1.4590 4.7099 42 1 7.8103 -2.8183 5.5580 43 1 10.2443 -3.8327 7.6043 44 1 2.2490 -1.6318 -1.1526 45 1 1.9391 1.0472 -4.6424 46 1 3.6438 0.6130 -4.9957 47 1 2.9989 -1.2765 -6.3454 48 1 1.7168 -0.0937 -6.7573 49 1 0.2286 -3.4227 -5.5774 50 1 0.5452 -2.5193 -7.0780 51 1 1.8868 -3.3082 -6.2144 52 1 2.2376 -2.8166 -4.0034 53 1 0.8806 -1.9362 -3.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277356242.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:59 Heat of formation + Delta-G solvation = -109.972537 kcal Electronic energy + Delta-G solvation = -29018.856585 eV Core-core repulsion = 24923.418311 eV Total energy + Delta-G solvation = -4095.438275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.35677 -40.16331 -39.29183 -37.93004 -36.64046 -35.84999 -33.76902 -33.30220 -32.99767 -31.48200 -29.80685 -28.64542 -26.80379 -26.64114 -24.95804 -23.68501 -22.39483 -22.19087 -21.67721 -21.05295 -20.89588 -19.90374 -18.34365 -17.85420 -17.44227 -17.12909 -16.99414 -16.50444 -16.24307 -16.00643 -15.67725 -15.52676 -15.27271 -15.19858 -15.09636 -14.78214 -14.37848 -14.11734 -14.05859 -13.95072 -13.51997 -13.37126 -13.21238 -13.08504 -12.98363 -12.90542 -12.76664 -12.52262 -12.44634 -12.43236 -12.35752 -12.15867 -12.12488 -12.06010 -11.79109 -11.67380 -11.56663 -11.50496 -10.78723 -10.35831 -10.06004 -10.02404 -9.43052 -9.29343 -8.47087 -5.96108 1.39595 1.41669 1.52585 1.64253 2.04599 2.21675 2.29025 2.92990 3.03358 3.20074 3.45252 3.50662 3.59528 3.78872 3.91076 4.07312 4.11700 4.26538 4.30060 4.32405 4.34737 4.38649 4.45018 4.50747 4.51692 4.54678 4.58592 4.64742 4.66697 4.71533 4.81926 4.84214 4.88534 4.91630 4.95137 4.98220 5.03272 5.11514 5.21583 5.27171 5.31571 5.39966 5.42691 5.61345 5.83855 5.90724 6.03329 6.13440 6.43730 6.58132 6.59729 7.11868 7.28665 7.55513 8.11051 8.69944 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015143 B = 0.001613 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.571222 B =17359.839190 C =18403.255623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.061 0.939 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.061 3.939 7 N -0.690 5.690 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.625 6.625 11 N -0.572 5.572 12 C -0.337 4.337 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.273 1.273 18 H -0.269 1.269 19 H -0.271 1.271 20 N -0.711 5.711 21 C 0.522 3.478 22 O -0.582 6.582 23 C -0.121 4.121 24 H 0.122 0.878 25 C -0.112 4.112 26 C 0.038 3.962 27 N -0.543 5.543 28 C 0.015 3.985 29 C 0.050 3.950 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.343 0.657 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.413 0.587 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.060 0.940 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.037 0.963 52 H 0.074 0.926 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.309 -2.527 -19.295 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.067 4.067 7 N -0.323 5.323 8 C -0.066 4.066 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.467 4.467 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.194 1.194 19 H -0.196 1.196 20 N -0.363 5.363 21 C 0.309 3.691 22 O -0.461 6.461 23 C -0.142 4.142 24 H 0.140 0.860 25 C -0.150 4.150 26 C -0.090 4.090 27 N -0.268 5.268 28 C -0.133 4.133 29 C -0.078 4.078 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.249 0.751 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.093 0.907 51 H 0.056 0.944 52 H 0.092 0.908 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.594 -0.548 -19.377 29.770 hybrid contribution 1.592 -1.642 0.259 2.301 sum -21.002 -2.190 -19.118 28.485 Atomic orbital electron populations 1.22098 0.94465 1.02856 1.01974 1.20955 0.94365 0.96634 0.84326 0.92072 1.21778 0.94138 1.02224 0.96853 1.21475 0.95754 1.00539 0.97023 1.22069 0.85830 0.99326 0.99468 1.60054 1.06373 1.61325 1.04540 1.21526 0.90281 0.98614 0.96219 1.20957 0.90673 0.82766 0.83328 1.90488 1.72855 1.47377 1.40497 1.41929 1.06844 1.49096 1.23081 1.19641 0.83110 1.34697 1.09213 0.90397 1.26038 1.04933 0.95657 0.94551 1.69663 1.38365 1.35850 1.12089 0.84988 0.76761 0.78556 0.78023 1.19874 1.19382 1.19626 1.46033 1.66687 1.14550 1.09052 1.20773 0.76409 0.86709 0.85250 1.90676 1.51842 1.18110 1.85522 1.22261 1.01721 0.97203 0.93052 0.86012 1.22425 1.02476 0.97627 0.92487 1.23278 0.93751 0.95123 0.96828 1.64723 1.42548 1.16649 1.02843 1.22565 1.01044 0.90919 0.98780 1.22829 0.96855 0.96102 0.92057 0.90900 0.90534 0.94461 0.89122 0.89116 0.93138 0.91966 0.93612 0.90575 0.83891 0.91370 0.87965 0.76916 0.91254 0.75061 0.91479 0.89819 0.92159 0.89529 0.90739 0.90746 0.94406 0.90791 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 71.98 0.68 -1.48 16 2 C 0.14 2.18 2.57 44.99 0.12 2.30 16 3 H 0.06 1.32 7.58 -2.39 -0.02 1.31 16 4 C -0.11 -1.33 4.75 30.60 0.15 -1.18 16 5 C -0.11 -1.96 5.36 30.60 0.16 -1.79 16 6 C 0.06 1.27 5.69 86.30 0.49 1.76 16 7 N -0.69 -21.33 6.12 -517.92 -3.17 -24.50 16 8 C 0.07 2.22 6.17 85.56 0.53 2.75 16 9 C 0.44 20.80 7.82 87.66 0.69 21.49 16 10 O -0.63 -35.08 15.78 -3.08 -0.05 -35.13 16 11 N -0.57 -29.42 5.29 -306.97 -1.62 -31.04 16 12 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 13 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 14 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 15 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 16 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 N -0.71 -10.12 4.36 -442.56 -1.93 -12.05 16 21 C 0.52 10.29 6.92 87.66 0.61 10.89 16 22 O -0.58 -16.90 15.11 -3.05 -0.05 -16.95 16 23 C -0.12 -1.71 3.38 -10.66 -0.04 -1.75 16 24 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 25 C -0.11 -1.80 6.39 31.80 0.20 -1.60 16 26 C 0.04 0.48 6.56 86.65 0.57 1.05 16 27 N -0.54 -7.47 5.55 -909.16 -5.05 -12.52 16 28 C 0.02 0.14 9.40 127.69 1.20 1.34 16 29 C 0.05 0.57 6.28 86.45 0.54 1.12 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.09 7.75 -2.39 -0.02 1.07 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.34 11.07 8.43 -89.70 -0.76 10.32 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 43 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.41 3.56 8.58 -92.70 -0.80 2.76 16 45 H 0.07 1.48 6.91 -2.39 -0.02 1.46 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 0.61 7.96 -2.39 -0.02 0.59 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.04 0.30 8.00 -2.39 -0.02 0.28 16 52 H 0.07 0.58 7.73 -2.38 -0.02 0.56 16 53 H 0.08 0.97 7.59 -2.39 -0.02 0.95 16 Total: -1.00 -75.45 428.14 -3.75 -79.21 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -1.37 Total: 40.83 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 7.18 Total: 16.31 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -11.49 Total: -129.15 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.09 Total: -52.08 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -75.45 -3.75 -79.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277356242.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.766 kcal (2) G-P(sol) polarization free energy of solvation -75.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds