Wall clock time and date at job start Sat Apr 11 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47035 * 2 1 4 4 N 1.46900 * 109.47076 * 120.00220 * 2 1 3 5 5 C 1.46902 * 111.00071 * 56.04596 * 4 2 1 6 6 C 1.46900 * 110.99560 * 179.97438 * 4 2 1 7 7 C 1.50700 * 109.46778 * 170.00191 * 6 4 2 8 8 O 1.21275 * 120.00393 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99632 * 180.02562 * 7 6 4 10 10 C 1.47017 * 125.65357 * 0.02562 * 9 7 6 11 11 C 1.54315 * 107.27451 * 178.90670 * 10 9 7 12 12 H 1.09005 * 110.72207 * 96.17382 * 11 10 9 13 13 N 1.46903 * 110.72128 * 219.44378 * 11 10 9 14 14 C 1.46895 * 111.00277 * 268.52182 * 13 11 10 15 15 C 1.50704 * 109.47392 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99554 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99857 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99745 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00039 * 0.02562 * 18 17 15 20 20 C 1.38943 * 120.00080 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00056 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47297 * 60.00126 * 22 20 18 24 24 H 1.48507 * 109.47355 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46976 * 300.00030 * 22 20 18 26 26 C 1.55156 * 102.94436 * 337.80810 * 11 10 9 27 27 C 1.47471 * 125.62668 * 179.97438 * 9 7 6 28 28 H 1.09008 * 110.34870 * 85.31950 * 27 9 7 29 29 C 1.53001 * 110.40642 * 322.98869 * 27 9 7 30 30 H 1.09007 * 109.46740 * 299.99423 * 1 2 3 31 31 H 1.08994 * 109.47451 * 59.99810 * 1 2 3 32 32 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46431 * 240.00297 * 2 1 3 34 34 H 1.09001 * 109.47444 * 60.00284 * 3 2 1 35 35 H 1.08998 * 109.46810 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47158 * 300.00579 * 3 2 1 37 37 H 1.09000 * 109.47359 * 183.95163 * 5 4 2 38 38 H 1.08997 * 109.47128 * 303.95185 * 5 4 2 39 39 H 1.09000 * 109.46781 * 63.95059 * 5 4 2 40 40 H 1.09003 * 109.47340 * 50.00237 * 6 4 2 41 41 H 1.08996 * 109.47636 * 290.00026 * 6 4 2 42 42 H 1.08998 * 109.88206 * 59.48651 * 10 9 7 43 43 H 1.09007 * 109.88177 * 298.32523 * 10 9 7 44 44 H 1.00898 * 110.99667 * 32.48098 * 13 11 10 45 45 H 1.09002 * 109.47366 * 300.00226 * 14 13 11 46 46 H 1.09006 * 109.46971 * 59.99689 * 14 13 11 47 47 H 0.97002 * 120.00006 * 0.02562 * 17 15 14 48 48 H 0.96998 * 120.00208 * 179.97438 * 21 20 18 49 49 H 1.09002 * 111.00677 * 153.57697 * 26 11 10 50 50 H 1.09002 * 111.00564 * 277.38955 * 26 11 10 51 51 H 1.08998 * 109.46676 * 304.59236 * 29 27 9 52 52 H 1.09000 * 109.47559 * 64.59168 * 29 27 9 53 53 H 1.09001 * 109.47084 * 184.59703 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4730 -2.0536 1.2815 6 6 3.4882 -0.7126 1.2330 7 6 3.9531 -1.2051 2.5792 8 8 3.1413 -1.5089 3.4273 9 7 5.2713 -1.3069 2.8410 10 6 6.3584 -0.9724 1.9094 11 6 7.6892 -1.2191 2.6505 12 1 8.0858 -2.2063 2.4129 13 7 8.6672 -0.1724 2.3249 14 6 9.4911 -0.5617 1.1727 15 6 10.4798 0.5343 0.8688 16 8 10.4967 1.5406 1.5459 17 7 11.3457 0.3959 -0.1546 18 6 12.2448 1.3933 -0.4313 19 1 12.2594 2.2896 0.1709 20 6 13.1373 1.2509 -1.4867 21 7 13.1199 0.1600 -2.2193 22 14 14.3627 2.6095 -1.8634 23 1 15.2358 2.8300 -0.6826 24 1 15.1952 2.2162 -3.0286 25 1 13.6310 3.8626 -2.1789 26 6 7.2756 -1.1386 4.1438 27 6 5.8618 -1.7713 4.1101 28 1 5.9323 -2.8590 4.1197 29 6 5.0301 -1.2800 5.2967 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.7949 -2.5189 2.2132 38 1 0.3842 -2.0100 1.2544 39 1 1.8343 -2.6417 0.4379 40 1 3.8694 0.2943 1.0629 41 1 3.8604 -1.3783 0.4542 42 1 6.2860 0.0748 1.6160 43 1 6.3009 -1.6113 1.0280 44 1 8.2094 0.7115 2.1600 45 1 10.0278 -1.4818 1.4041 46 1 8.8502 -0.7232 0.3059 47 1 11.3324 -0.4090 -0.6957 48 1 13.7427 0.0608 -2.9563 49 1 7.9506 -1.7237 4.7683 50 1 7.2327 -0.1032 4.4820 51 1 4.9353 -0.1952 5.2495 52 1 4.0396 -1.7333 5.2586 53 1 5.5231 -1.5615 6.2272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278423991.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:18 Heat of formation + Delta-G solvation = -76.206111 kcal Electronic energy + Delta-G solvation = -30314.649701 eV Core-core repulsion = 26220.675648 eV Total energy + Delta-G solvation = -4093.974052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.47881 -40.18021 -39.45369 -38.22861 -36.19672 -35.54611 -33.49924 -33.24562 -32.63937 -31.13094 -29.90356 -27.94127 -27.34601 -26.65963 -25.79352 -25.47984 -23.01354 -21.93308 -21.09305 -20.89084 -19.95112 -19.89034 -18.15563 -17.77170 -17.71547 -17.19420 -16.69900 -16.29796 -16.19048 -15.93980 -15.91158 -15.69834 -15.28438 -15.13794 -14.75293 -14.71197 -14.16619 -14.07541 -13.80463 -13.57002 -13.48986 -13.45071 -13.36150 -13.21851 -13.04729 -13.00014 -12.85105 -12.80388 -12.71459 -12.42263 -12.39484 -12.29946 -12.12878 -12.03270 -11.96720 -11.71970 -11.58809 -11.48274 -10.55332 -10.31600 -9.99358 -9.71016 -9.32909 -9.27612 -8.45014 -5.93232 1.40914 1.43303 1.53485 1.61014 1.82652 2.08560 2.30376 2.84078 2.96171 3.22853 3.38040 3.46948 3.66274 3.85683 3.91092 4.01070 4.07276 4.13034 4.20064 4.23811 4.27742 4.35583 4.38692 4.43187 4.51207 4.55450 4.56035 4.62499 4.63962 4.70670 4.78614 4.80313 4.88766 4.90360 4.95710 5.00029 5.07200 5.10292 5.22598 5.27471 5.28059 5.36988 5.42894 5.50827 5.90872 5.93742 6.10447 6.11819 6.34207 6.52589 6.62475 7.15029 7.20157 7.59360 8.14788 8.71956 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.002204 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.251304 B =12702.639105 C =14307.351098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.148 4.148 4 N -0.536 5.536 5 C 0.021 3.979 6 C 0.037 3.963 7 C 0.527 3.473 8 O -0.552 6.552 9 N -0.614 5.614 10 C 0.072 3.928 11 C 0.083 3.917 12 H 0.112 0.888 13 N -0.666 5.666 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.110 4.110 27 C 0.134 3.866 28 H 0.085 0.915 29 C -0.152 4.152 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.347 0.653 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.099 0.901 50 H 0.070 0.930 51 H 0.040 0.960 52 H 0.063 0.937 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.419 -7.478 3.634 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.205 4.205 4 N -0.262 5.262 5 C -0.127 4.127 6 C -0.093 4.093 7 C 0.316 3.684 8 O -0.430 6.430 9 N -0.350 5.350 10 C -0.053 4.053 11 C -0.028 4.028 12 H 0.130 0.870 13 N -0.298 5.298 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.813 3.187 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.149 4.149 27 C 0.031 3.969 28 H 0.103 0.897 29 C -0.210 4.210 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.167 0.833 45 H 0.127 0.873 46 H 0.092 0.908 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.088 0.912 51 H 0.060 0.940 52 H 0.082 0.918 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.502 -6.969 5.200 23.194 hybrid contribution 0.479 0.029 -1.900 1.960 sum -21.024 -6.940 3.299 22.384 Atomic orbital electron populations 1.21887 0.93214 1.02386 1.02578 1.21749 0.96648 0.95103 0.89871 1.21926 1.00958 0.94988 1.02665 1.61727 1.05673 1.18538 1.40224 1.22527 1.01187 0.88048 1.00953 1.22054 0.90103 1.03506 0.93667 1.20512 0.80508 0.77349 0.90005 1.90607 1.53003 1.50604 1.48779 1.48605 1.04717 1.65674 1.15958 1.23004 0.87348 1.01353 0.93597 1.22703 0.88368 0.96388 0.95331 0.87020 1.60141 1.24948 1.05342 1.39380 1.21631 0.94881 0.96651 0.93664 1.20945 0.84834 0.89723 0.82052 1.90507 1.74439 1.33752 1.52432 1.41927 1.31176 1.19309 1.28648 1.19603 1.12908 0.99523 1.14195 0.90397 1.25988 0.99769 0.99937 0.95499 1.69655 1.38886 1.27548 1.19966 0.85036 0.77795 0.77912 0.77907 1.19846 1.19602 1.19713 1.22845 0.94020 1.02016 0.96013 1.22027 0.92400 0.98854 0.83580 0.89704 1.22008 1.00879 1.00634 0.97476 0.92572 0.90656 0.92116 0.93610 0.92592 0.92651 0.90593 0.91588 0.90182 0.95495 0.86915 0.90800 0.91201 0.89505 0.83291 0.87335 0.90816 0.76887 0.91339 0.88251 0.91150 0.94042 0.91848 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.84 71.98 0.64 -1.21 16 2 C 0.07 1.11 2.67 44.92 0.12 1.23 16 3 C -0.15 -2.12 8.99 71.98 0.65 -1.47 16 4 N -0.54 -10.33 4.37 -901.61 -3.94 -14.27 16 5 C 0.02 0.38 8.84 127.69 1.13 1.51 16 6 C 0.04 0.68 4.45 85.56 0.38 1.06 16 7 C 0.53 12.03 7.36 87.66 0.64 12.68 16 8 O -0.55 -15.95 12.03 -3.02 -0.04 -15.99 16 9 N -0.61 -12.11 3.24 -788.02 -2.56 -14.67 16 10 C 0.07 1.21 6.21 86.73 0.54 1.75 16 11 C 0.08 1.54 3.28 46.10 0.15 1.69 16 12 H 0.11 1.76 7.83 -2.38 -0.02 1.74 16 13 N -0.67 -17.84 6.01 -489.45 -2.94 -20.78 16 14 C 0.06 1.88 6.03 85.56 0.52 2.39 16 15 C 0.44 19.42 7.82 87.66 0.69 20.11 16 16 O -0.62 -33.10 15.78 -3.07 -0.05 -33.15 16 17 N -0.57 -28.00 5.29 -306.99 -1.62 -29.62 16 18 C -0.33 -18.34 9.68 84.04 0.81 -17.53 16 19 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 20 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 21 N -0.92 -48.28 13.05 21.66 0.28 -48.00 16 22 Si 0.99 42.00 29.55 68.60 2.03 44.03 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C -0.11 -2.01 6.19 31.99 0.20 -1.82 16 27 C 0.13 2.51 3.77 45.47 0.17 2.68 16 28 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 29 C -0.15 -3.15 8.59 71.98 0.62 -2.53 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 6.26 -2.38 -0.01 0.73 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.79 6.20 -2.39 -0.01 0.78 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 1.53 5.88 -2.39 -0.01 1.52 16 38 H 0.08 1.31 6.01 -2.39 -0.01 1.29 16 39 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.11 1.90 5.83 -2.39 -0.01 1.89 16 41 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 42 H 0.07 1.22 7.49 -2.39 -0.02 1.20 16 43 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.35 10.02 7.74 -89.70 -0.69 9.33 16 45 H 0.11 2.82 8.08 -2.39 -0.02 2.80 16 46 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.40 18.26 7.90 -92.71 -0.73 17.53 16 48 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 49 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 51 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.06 1.59 6.10 -2.39 -0.01 1.57 16 53 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -69.12 413.53 -1.63 -70.75 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.51 Total: 41.32 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 7.72 Total: 20.39 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -10.78 Total: -127.34 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.08 Total: -49.14 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -69.12 -1.63 -70.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278423991.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.460 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds