Wall clock time and date at job start Sat Apr 11 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46705 * 2 1 4 4 N 1.46494 * 109.46982 * 119.99654 * 2 1 3 5 5 C 1.34784 * 119.99635 * 155.00372 * 4 2 1 6 6 O 1.21279 * 119.99925 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99961 * 180.02562 * 5 4 2 8 8 N 1.46895 * 109.47051 * 180.02562 * 7 5 4 9 9 C 1.46895 * 111.00567 * 66.04495 * 8 7 5 10 10 C 1.46902 * 110.99880 * 190.00048 * 8 7 5 11 11 C 1.50700 * 109.47492 * 169.99500 * 10 8 7 12 12 O 1.21286 * 119.99664 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00176 * 179.97438 * 11 10 8 14 14 C 1.47023 * 125.64591 * 179.71601 * 13 11 10 15 15 C 1.54337 * 107.26447 * 178.85386 * 14 13 11 16 16 H 1.09003 * 110.51452 * 96.45184 * 15 14 13 17 17 C 1.52993 * 111.00158 * 219.60281 * 15 14 13 18 18 C 1.55158 * 103.01815 * 338.14273 * 15 14 13 19 19 H 1.08999 * 111.03268 * 153.39748 * 18 15 14 20 20 N 1.46495 * 111.00138 * 277.22892 * 18 15 14 21 21 C 1.36936 * 119.99818 * 198.65196 * 20 18 15 22 22 H 1.08007 * 120.00393 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00076 * 180.02562 * 21 20 18 24 24 N 1.31624 * 120.00200 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99994 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47501 * 89.99959 * 25 23 21 27 27 H 1.48499 * 109.47194 * 210.00006 * 25 23 21 28 28 H 1.48501 * 109.46989 * 329.99704 * 25 23 21 29 29 C 1.47418 * 125.64873 * 0.03481 * 13 11 10 30 30 H 1.08996 * 109.47170 * 300.00241 * 1 2 3 31 31 H 1.09005 * 109.47238 * 60.00512 * 1 2 3 32 32 H 1.09002 * 109.46770 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47451 * 240.00485 * 2 1 3 34 34 H 1.09005 * 109.46855 * 299.99723 * 3 2 1 35 35 H 1.08996 * 109.47503 * 59.99963 * 3 2 1 36 36 H 1.08997 * 109.47041 * 180.02562 * 3 2 1 37 37 H 0.96995 * 120.00292 * 335.27805 * 4 2 1 38 38 H 1.09004 * 109.46932 * 300.00223 * 7 5 4 39 39 H 1.08997 * 109.47392 * 59.99562 * 7 5 4 40 40 H 1.09000 * 109.46782 * 59.99875 * 9 8 7 41 41 H 1.08999 * 109.47650 * 180.02562 * 9 8 7 42 42 H 1.08998 * 109.46728 * 300.00478 * 9 8 7 43 43 H 1.09005 * 109.47323 * 289.99879 * 10 8 7 44 44 H 1.09004 * 109.47507 * 49.99516 * 10 8 7 45 45 H 1.08999 * 109.88621 * 298.40082 * 14 13 11 46 46 H 1.09002 * 109.88162 * 59.56863 * 14 13 11 47 47 H 1.09002 * 109.47281 * 173.78372 * 17 15 14 48 48 H 1.09003 * 109.47310 * 293.78016 * 17 15 14 49 49 H 1.08998 * 109.47645 * 53.78162 * 17 15 14 50 50 H 0.96994 * 120.00379 * 18.65651 * 20 18 15 51 51 H 0.96995 * 120.00412 * 180.02562 * 24 23 21 52 52 H 1.09000 * 110.36532 * 322.91808 * 29 13 11 53 53 H 1.08995 * 110.37248 * 85.24718 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 3.2404 -1.2590 1.1944 6 8 3.9355 -1.1993 0.2024 7 6 3.7425 -1.9699 2.4247 8 7 5.0895 -2.4977 2.1697 9 6 6.0547 -1.4071 1.9778 10 6 5.5169 -3.3947 3.2517 11 6 6.7830 -4.1040 2.8457 12 8 7.2807 -3.8835 1.7618 13 7 7.3630 -4.9824 3.6873 14 6 8.5907 -5.7449 3.4176 15 6 8.8871 -6.5946 4.6715 16 1 8.4990 -7.6057 4.5483 17 6 10.3871 -6.6254 4.9710 18 6 8.1188 -5.8444 5.7915 19 1 7.8391 -6.5239 6.5966 20 7 8.9057 -4.7209 6.3060 21 6 8.6017 -4.1729 7.5236 22 1 7.7817 -4.5687 8.1045 23 6 9.3469 -3.1080 8.0109 24 7 9.0545 -2.5809 9.1810 25 14 10.7639 -2.4220 7.0055 26 1 10.2635 -1.3426 6.1170 27 1 11.7980 -1.8720 7.9184 28 1 11.3568 -3.5061 6.1818 29 6 6.8677 -5.3428 5.0282 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.6766 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.4606 -0.7420 1.9881 38 1 3.7790 -1.2698 3.2594 39 1 3.0700 -2.7920 2.6692 40 1 6.0860 -0.7877 2.8742 41 1 7.0435 -1.8258 1.7904 42 1 5.7508 -0.7986 1.1261 43 1 5.7000 -2.8129 4.1551 44 1 4.7350 -4.1292 3.4450 45 1 8.4421 -6.3937 2.5544 46 1 9.4186 -5.0608 3.2315 47 1 10.5580 -7.1367 5.9183 48 1 10.9062 -7.1561 4.1728 49 1 10.7658 -5.6053 5.0352 50 1 9.6419 -4.3651 5.7843 51 1 9.5750 -1.8365 9.5214 52 1 6.4459 -4.4687 5.5244 53 1 6.1233 -6.1358 4.9573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281406625.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:28 Heat of formation + Delta-G solvation = -65.934971 kcal Electronic energy + Delta-G solvation = -30787.510889 eV Core-core repulsion = 26693.982226 eV Total energy + Delta-G solvation = -4093.528662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36512 -40.83911 -39.28992 -37.62368 -36.59210 -35.72101 -33.99770 -32.77130 -32.64160 -30.06775 -29.60959 -28.91049 -28.10523 -27.11410 -25.52867 -24.46155 -23.18385 -22.08105 -21.41506 -20.81633 -20.20901 -19.73587 -18.34414 -18.00491 -17.47471 -17.11381 -16.87013 -16.53733 -16.33535 -16.02136 -15.79785 -15.63701 -15.30084 -14.92678 -14.90237 -14.65506 -14.44469 -14.10688 -13.93478 -13.90390 -13.76752 -13.38174 -13.20464 -13.16435 -13.08362 -13.07849 -12.97147 -12.88820 -12.66333 -12.57561 -12.27555 -12.25743 -12.12188 -11.93252 -11.91640 -11.60152 -11.40077 -11.09344 -10.99070 -10.61071 -10.09089 -9.68769 -9.38919 -9.18639 -8.01961 -5.32109 1.32131 1.35560 1.40214 1.64045 1.66329 1.82784 2.23677 2.45403 2.98880 3.29096 3.43911 3.60877 3.76050 3.80855 3.90374 3.98324 4.05424 4.12197 4.14803 4.25767 4.31296 4.32318 4.33593 4.40792 4.50274 4.55691 4.62867 4.65146 4.72427 4.74947 4.77719 4.83853 4.92787 4.97111 4.98497 5.01309 5.08536 5.19351 5.24146 5.26055 5.31473 5.41015 5.47403 5.59294 5.78977 5.82083 5.84848 6.23561 6.59226 6.62921 7.09237 7.22531 7.33907 7.86999 8.03257 9.19151 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.002558 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.581757 B =10942.753864 C =11918.285730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 C -0.160 4.160 4 N -0.715 5.715 5 C 0.511 3.489 6 O -0.568 6.568 7 C 0.035 3.965 8 N -0.526 5.526 9 C 0.026 3.974 10 C 0.048 3.952 11 C 0.520 3.480 12 O -0.574 6.574 13 N -0.610 5.610 14 C 0.113 3.887 15 C -0.099 4.099 16 H 0.123 0.877 17 C -0.134 4.134 18 C 0.162 3.838 19 H 0.091 0.909 20 N -0.740 5.740 21 C -0.211 4.211 22 H 0.076 0.924 23 C -0.054 4.054 24 N -0.978 5.978 25 Si 0.929 3.071 26 H -0.294 1.294 27 H -0.298 1.298 28 H -0.256 1.256 29 C 0.077 3.923 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.416 0.584 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.030 0.970 50 H 0.361 0.639 51 H 0.255 0.745 52 H 0.069 0.931 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.095 -2.137 -13.675 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.029 3.971 3 C -0.218 4.218 4 N -0.370 5.370 5 C 0.298 3.702 6 O -0.446 6.446 7 C -0.095 4.095 8 N -0.251 5.251 9 C -0.122 4.122 10 C -0.082 4.082 11 C 0.309 3.691 12 O -0.454 6.454 13 N -0.344 5.344 14 C -0.010 4.010 15 C -0.118 4.118 16 H 0.141 0.859 17 C -0.192 4.192 18 C 0.053 3.947 19 H 0.108 0.892 20 N -0.383 5.383 21 C -0.343 4.343 22 H 0.094 0.906 23 C -0.246 4.246 24 N -0.630 5.630 25 Si 0.760 3.240 26 H -0.222 1.222 27 H -0.225 1.225 28 H -0.181 1.181 29 C -0.048 4.048 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.253 0.747 38 H 0.104 0.896 39 H 0.157 0.843 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.049 0.951 50 H 0.195 0.805 51 H 0.064 0.936 52 H 0.088 0.912 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.493 -2.166 -15.240 23.301 hybrid contribution 1.272 1.581 0.720 2.153 sum -16.220 -0.585 -14.520 21.778 Atomic orbital electron populations 1.22012 0.91428 1.03234 1.04134 1.20974 0.95844 0.92455 0.87873 1.22155 1.00200 0.96197 1.03294 1.46002 1.17067 1.56176 1.17727 1.20856 0.81680 0.78139 0.89552 1.90689 1.57125 1.60300 1.36498 1.22152 0.91108 1.01386 0.94892 1.61232 1.01947 1.19187 1.42697 1.22457 0.96664 0.92834 1.00209 1.21978 0.95917 0.97447 0.92887 1.20630 0.86300 0.78814 0.83364 1.90650 1.66109 1.64722 1.23892 1.48497 1.26511 1.41658 1.17699 1.22004 0.86332 0.93936 0.98683 1.22512 0.96920 0.99900 0.92463 0.85915 1.21626 0.94309 1.00950 1.02281 1.21671 0.90018 0.88607 0.94430 0.89173 1.42803 1.37356 1.38400 1.19727 1.19069 1.11519 1.09617 0.94056 0.90648 1.25205 1.01803 0.99952 0.97653 1.69817 1.44066 1.28387 1.20685 0.85806 0.81056 0.78808 0.78367 1.22170 1.22506 1.18123 1.23313 0.98913 1.01328 0.81221 0.90490 0.90077 0.91643 0.92100 0.90431 0.91186 0.95138 0.74674 0.89564 0.84333 0.95791 0.92491 0.90886 0.91105 0.84488 0.90805 0.94272 0.91680 0.90811 0.95076 0.80541 0.93614 0.91214 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.38 71.98 0.68 -0.44 16 2 C 0.13 1.92 3.18 45.00 0.14 2.06 16 3 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 4 N -0.72 -10.29 5.08 -442.53 -2.25 -12.54 16 5 C 0.51 11.55 7.52 87.66 0.66 12.21 16 6 O -0.57 -18.88 13.98 -3.03 -0.04 -18.92 16 7 C 0.03 0.66 5.45 85.56 0.47 1.13 16 8 N -0.53 -14.93 4.24 -931.66 -3.95 -18.87 16 9 C 0.03 0.87 8.85 127.69 1.13 2.00 16 10 C 0.05 1.25 4.45 85.56 0.38 1.63 16 11 C 0.52 17.54 7.54 87.66 0.66 18.20 16 12 O -0.57 -24.05 14.66 -3.05 -0.04 -24.09 16 13 N -0.61 -18.58 3.33 -811.78 -2.70 -21.28 16 14 C 0.11 3.28 6.47 86.73 0.56 3.84 16 15 C -0.10 -2.44 3.40 -9.60 -0.03 -2.48 16 16 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.13 -3.51 8.73 71.98 0.63 -2.88 16 18 C 0.16 4.96 3.44 46.39 0.16 5.12 16 19 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 20 N -0.74 -30.80 4.54 -316.38 -1.44 -32.24 16 21 C -0.21 -10.85 10.47 84.03 0.88 -9.97 16 22 H 0.08 4.10 8.06 -2.91 -0.02 4.08 16 23 C -0.05 -3.05 5.50 84.86 0.47 -2.58 16 24 N -0.98 -60.04 13.97 21.65 0.30 -59.74 16 25 Si 0.93 45.41 27.74 68.60 1.90 47.31 16 26 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 27 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 28 H -0.26 -11.48 6.52 99.48 0.65 -10.83 16 29 C 0.08 2.07 6.38 86.86 0.55 2.62 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 1.23 7.58 -2.39 -0.02 1.21 16 34 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.42 3.00 8.60 -92.71 -0.80 2.20 16 38 H 0.09 1.32 8.12 -2.38 -0.02 1.30 16 39 H 0.14 1.64 7.93 -2.39 -0.02 1.62 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 2.22 5.82 -2.39 -0.01 2.20 16 42 H 0.07 2.55 5.88 -2.39 -0.01 2.53 16 43 H 0.07 1.86 7.83 -2.38 -0.02 1.84 16 44 H 0.14 2.54 7.93 -2.38 -0.02 2.52 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.04 1.31 7.78 -2.39 -0.02 1.29 16 47 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.03 0.99 6.37 -2.39 -0.02 0.97 16 50 H 0.36 15.62 3.95 -92.71 -0.37 15.25 16 51 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 52 H 0.07 2.10 7.48 -2.39 -0.02 2.08 16 53 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -80.30 415.99 -0.52 -80.82 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.32 Total: 30.77 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 8.02 Total: 28.78 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -10.03 Total: -144.67 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.09 Total: -43.01 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Total: -80.30 -0.52 -80.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281406625.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.887 kcal (2) G-P(sol) polarization free energy of solvation -80.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds