Wall clock time and date at job start Sat Apr 11 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46828 * 2 1 4 4 N 1.46495 * 109.47548 * 120.00164 * 2 1 3 5 5 C 1.34778 * 120.00415 * 154.99885 * 4 2 1 6 6 O 1.21279 * 119.99634 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00087 * 180.02562 * 5 4 2 8 8 N 1.46901 * 109.47069 * 179.97438 * 7 5 4 9 9 C 1.46906 * 110.99703 * 66.04710 * 8 7 5 10 10 C 1.46897 * 111.00251 * 190.00069 * 8 7 5 11 11 C 1.50704 * 109.47317 * 170.00395 * 10 8 7 12 12 O 1.21276 * 120.00040 * 359.97438 * 11 10 8 13 13 N 1.34780 * 119.99770 * 179.97438 * 11 10 8 14 14 C 1.47743 * 125.81887 * 179.97438 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 H 1.08989 * 111.04037 * 279.00643 * 15 14 13 17 17 C 1.53010 * 111.00288 * 155.16710 * 15 14 13 18 18 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 19 19 H 1.09004 * 110.72010 * 206.13157 * 18 15 14 20 20 N 1.46501 * 110.72431 * 82.85828 * 18 15 14 21 21 C 1.36932 * 120.00386 * 160.02463 * 20 18 15 22 22 H 1.08009 * 119.99883 * 359.97438 * 21 20 18 23 23 C 1.38813 * 120.00314 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99928 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 119.99689 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47546 * 90.00289 * 25 23 21 27 27 H 1.48502 * 109.47170 * 209.99994 * 25 23 21 28 28 H 1.48497 * 109.47512 * 329.99564 * 25 23 21 29 29 C 1.47020 * 125.64983 * 0.02562 * 13 11 10 30 30 H 1.09002 * 109.47359 * 299.99441 * 1 2 3 31 31 H 1.08999 * 109.47747 * 60.00009 * 1 2 3 32 32 H 1.09000 * 109.47118 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46862 * 240.00379 * 2 1 3 34 34 H 1.09008 * 109.46900 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47370 * 300.00160 * 3 2 1 36 36 H 1.09002 * 109.47089 * 60.00519 * 3 2 1 37 37 H 0.97000 * 119.99707 * 335.00561 * 4 2 1 38 38 H 1.09000 * 109.47444 * 60.00124 * 7 5 4 39 39 H 1.09003 * 109.47438 * 299.99752 * 7 5 4 40 40 H 1.09001 * 109.47206 * 183.95532 * 9 8 7 41 41 H 1.09003 * 109.47127 * 303.94938 * 9 8 7 42 42 H 1.09001 * 109.47189 * 63.95598 * 9 8 7 43 43 H 1.08992 * 109.47200 * 49.99877 * 10 8 7 44 44 H 1.09005 * 109.46707 * 290.00341 * 10 8 7 45 45 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 46 46 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 47 47 H 1.08996 * 109.46861 * 307.81105 * 17 15 14 48 48 H 1.08998 * 109.46481 * 67.80518 * 17 15 14 49 49 H 1.09002 * 109.46945 * 187.80738 * 17 15 14 50 50 H 0.97003 * 119.99337 * 340.02145 * 20 18 15 51 51 H 0.96999 * 119.99334 * 180.02562 * 24 23 21 52 52 H 1.09002 * 109.88367 * 61.60808 * 29 13 11 53 53 H 1.09000 * 109.88319 * 300.59426 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9358 -1.1986 0.2025 7 6 3.7425 -1.9700 2.4245 8 7 5.0889 -2.4990 2.1691 9 6 6.0549 -1.4091 1.9765 10 6 5.5162 -3.3960 3.2510 11 6 6.7817 -4.1062 2.8446 12 8 7.2786 -3.8870 1.7602 13 7 7.3614 -4.9849 3.6863 14 6 8.5972 -5.7499 3.4211 15 6 9.1620 -6.0898 4.8229 16 1 9.7102 -5.2448 5.2393 17 6 10.0432 -7.3396 4.7709 18 6 7.8618 -6.3592 5.6256 19 1 8.0165 -6.1645 6.6869 20 7 7.3953 -7.7313 5.4115 21 6 6.5338 -8.3090 6.3055 22 1 6.1986 -7.7532 7.1688 23 6 6.0913 -9.6089 6.1024 24 7 5.2629 -10.1640 6.9615 25 14 6.6717 -10.5704 4.6097 26 1 7.9134 -11.3106 4.9497 27 1 5.6178 -11.5334 4.2008 28 1 6.9451 -9.6319 3.4919 29 6 6.8678 -5.3435 5.0239 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.4622 -0.7388 1.9893 38 1 3.0699 -2.7922 2.6690 39 1 3.7790 -1.2700 3.2592 40 1 7.0282 -1.8273 1.7199 41 1 5.7143 -0.7600 1.1697 42 1 6.1389 -0.8312 2.8969 43 1 4.7339 -4.1299 3.4448 44 1 5.7001 -2.8140 4.1542 45 1 9.3076 -5.1393 2.8638 46 1 8.3706 -6.6636 2.8716 47 1 9.4964 -8.1498 4.2887 48 1 10.9476 -7.1229 4.2024 49 1 10.3133 -7.6361 5.7844 50 1 7.6966 -8.2306 4.6363 51 1 4.9541 -11.0725 6.8196 52 1 5.8789 -5.7951 4.9454 53 1 6.8203 -4.4541 5.6523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281406627.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:31 Heat of formation + Delta-G solvation = -64.593310 kcal Electronic energy + Delta-G solvation = -30455.369969 eV Core-core repulsion = 26361.899485 eV Total energy + Delta-G solvation = -4093.470484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35733 -40.83338 -39.30348 -37.61865 -36.58472 -35.74441 -34.00507 -32.76019 -32.61462 -30.06193 -29.58190 -28.86280 -28.10098 -27.11395 -25.49138 -24.43480 -23.26477 -22.07132 -21.40511 -20.85662 -20.13232 -19.77226 -18.35705 -17.99052 -17.40943 -17.10667 -16.90653 -16.45043 -16.28889 -15.97854 -15.78924 -15.68615 -15.30915 -14.95887 -14.88698 -14.60212 -14.50868 -14.23843 -13.94375 -13.83833 -13.64272 -13.37009 -13.20541 -13.16677 -13.07852 -13.00286 -12.93580 -12.85267 -12.63136 -12.54270 -12.36534 -12.27186 -12.08521 -11.93234 -11.91154 -11.59128 -11.38006 -11.09813 -10.96519 -10.61000 -10.08375 -9.63376 -9.31196 -9.27583 -7.99429 -5.30977 1.37841 1.39259 1.44987 1.63055 1.67084 1.81422 2.22906 2.48838 3.01265 3.31145 3.42276 3.59954 3.76613 3.81710 3.87776 3.98553 4.03664 4.13816 4.17324 4.23749 4.32401 4.33582 4.37806 4.41241 4.55004 4.59405 4.62158 4.63002 4.67781 4.73400 4.75636 4.84271 4.92525 4.97333 4.99741 5.02534 5.14608 5.20695 5.25997 5.26936 5.31887 5.33209 5.47949 5.59712 5.83572 5.84642 5.91424 6.25380 6.58946 6.63562 7.10845 7.20962 7.34569 7.87717 8.04368 9.21574 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.002318 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.609687 B =12075.165985 C =13241.987777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.132 3.868 3 C -0.158 4.158 4 N -0.716 5.716 5 C 0.510 3.490 6 O -0.568 6.568 7 C 0.037 3.963 8 N -0.537 5.537 9 C 0.028 3.972 10 C 0.050 3.950 11 C 0.521 3.479 12 O -0.572 6.572 13 N -0.613 5.613 14 C 0.112 3.888 15 C -0.099 4.099 16 H 0.114 0.886 17 C -0.133 4.133 18 C 0.166 3.834 19 H 0.088 0.912 20 N -0.741 5.741 21 C -0.216 4.216 22 H 0.073 0.927 23 C -0.057 4.057 24 N -0.979 5.979 25 Si 0.936 3.064 26 H -0.278 1.278 27 H -0.302 1.302 28 H -0.264 1.264 29 C 0.080 3.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.416 0.584 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.045 0.955 47 H 0.036 0.964 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.363 0.637 51 H 0.255 0.745 52 H 0.060 0.940 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 23.638 -6.247 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.370 5.370 5 C 0.297 3.703 6 O -0.447 6.447 7 C -0.093 4.093 8 N -0.262 5.262 9 C -0.120 4.120 10 C -0.080 4.080 11 C 0.310 3.690 12 O -0.451 6.451 13 N -0.347 5.347 14 C -0.011 4.011 15 C -0.119 4.119 16 H 0.132 0.868 17 C -0.190 4.190 18 C 0.056 3.944 19 H 0.105 0.895 20 N -0.384 5.384 21 C -0.347 4.347 22 H 0.091 0.909 23 C -0.248 4.248 24 N -0.630 5.630 25 Si 0.765 3.235 26 H -0.204 1.204 27 H -0.230 1.230 28 H -0.189 1.189 29 C -0.045 4.045 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.135 0.865 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.197 0.803 51 H 0.064 0.936 52 H 0.079 0.921 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.387 23.557 -7.834 25.210 hybrid contribution -0.109 -0.910 -0.011 0.916 sum -4.496 22.647 -7.844 24.385 Atomic orbital electron populations 1.22017 0.91674 1.03050 1.04188 1.20968 0.95698 0.92718 0.87849 1.22133 1.00317 0.95812 1.03333 1.46010 1.17184 1.56232 1.17590 1.20905 0.81671 0.78085 0.89682 1.90693 1.57194 1.60270 1.36498 1.22106 0.91083 1.01114 0.95035 1.61124 1.02149 1.19735 1.43178 1.22476 0.96458 0.92628 1.00453 1.21951 0.95233 0.97269 0.93587 1.20697 0.86042 0.78951 0.83280 1.90653 1.65752 1.65466 1.23259 1.48640 1.26720 1.41366 1.17955 1.22299 0.86064 0.94822 0.97885 1.22611 0.95691 0.99976 0.93619 0.86772 1.21567 0.98919 0.95918 1.02646 1.21459 0.91337 0.82924 0.98649 0.89462 1.42849 1.55279 1.12595 1.27653 1.19053 1.17283 0.95881 1.02479 0.90918 1.25276 1.00422 0.98498 1.00651 1.69836 1.38920 1.15100 1.39155 0.85705 0.77507 0.79044 0.81228 1.20408 1.22960 1.18924 1.23048 0.99516 0.99607 0.82362 0.90311 0.90101 0.92048 0.92388 0.94842 0.90564 0.90970 0.74698 0.85518 0.88501 0.92144 0.91342 0.94412 0.86464 0.88841 0.90648 0.93683 0.94479 0.90721 0.91656 0.80273 0.93582 0.92117 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.38 71.98 0.68 -0.46 16 2 C 0.13 1.83 3.18 44.99 0.14 1.97 16 3 C -0.16 -2.04 9.48 71.98 0.68 -1.35 16 4 N -0.72 -9.65 5.08 -442.55 -2.25 -11.90 16 5 C 0.51 10.86 7.49 87.66 0.66 11.52 16 6 O -0.57 -18.17 13.99 -3.03 -0.04 -18.22 16 7 C 0.04 0.63 5.45 85.56 0.47 1.09 16 8 N -0.54 -13.80 4.24 -931.64 -3.95 -17.75 16 9 C 0.03 0.74 8.85 127.69 1.13 1.87 16 10 C 0.05 1.16 4.64 85.56 0.40 1.56 16 11 C 0.52 16.48 7.58 87.66 0.66 17.15 16 12 O -0.57 -22.70 14.58 -3.02 -0.04 -22.75 16 13 N -0.61 -18.28 3.34 -810.98 -2.71 -20.99 16 14 C 0.11 3.30 6.38 86.79 0.55 3.85 16 15 C -0.10 -2.54 3.51 -9.40 -0.03 -2.57 16 16 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 17 C -0.13 -3.41 8.85 71.99 0.64 -2.77 16 18 C 0.17 5.17 3.37 46.18 0.16 5.32 16 19 H 0.09 2.63 8.12 -2.38 -0.02 2.61 16 20 N -0.74 -30.63 4.42 -317.32 -1.40 -32.03 16 21 C -0.22 -11.08 10.46 84.03 0.88 -10.20 16 22 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 23 C -0.06 -3.16 5.50 84.86 0.47 -2.70 16 24 N -0.98 -59.91 13.97 21.65 0.30 -59.61 16 25 Si 0.94 44.56 27.74 68.60 1.90 46.46 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 28 H -0.26 -11.79 6.52 99.48 0.65 -11.14 16 29 C 0.08 2.23 6.22 86.73 0.54 2.77 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 1.16 7.58 -2.39 -0.02 1.15 16 34 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.42 2.65 8.60 -92.71 -0.80 1.85 16 38 H 0.13 1.61 7.93 -2.39 -0.02 1.60 16 39 H 0.10 1.03 8.12 -2.39 -0.02 1.01 16 40 H 0.06 1.96 5.88 -2.39 -0.01 1.95 16 41 H 0.07 2.04 5.82 -2.39 -0.01 2.02 16 42 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.12 2.47 7.93 -2.39 -0.02 2.45 16 44 H 0.09 1.62 8.12 -2.38 -0.02 1.60 16 45 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 46 H 0.04 1.50 7.98 -2.39 -0.02 1.48 16 47 H 0.04 1.11 6.37 -2.39 -0.02 1.10 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.36 15.29 3.96 -92.71 -0.37 14.93 16 51 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 52 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 53 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -79.07 416.87 -0.50 -79.56 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.32 Total: 30.17 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 8.01 Total: 27.04 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -10.00 Total: -142.27 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.09 Total: -40.96 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal Total: -79.07 -0.50 -79.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281406627.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.971 kcal (2) G-P(sol) polarization free energy of solvation -79.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds