Wall clock time and date at job start Sat Apr 11 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46892 * 109.47352 * 2 1 4 4 C 1.46905 * 110.99842 * 293.95346 * 3 2 1 5 5 C 1.46893 * 111.00174 * 170.00086 * 3 2 1 6 6 C 1.52998 * 109.47448 * 190.00030 * 5 3 2 7 7 C 1.50699 * 109.47460 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46716 * 324.99263 * 10 9 7 12 12 C 1.52996 * 109.47499 * 84.99568 * 10 9 7 13 13 C 1.53001 * 109.47094 * 204.99856 * 10 9 7 14 14 C 1.53932 * 113.73468 * 161.73052 * 13 10 9 15 15 N 1.47964 * 86.18072 * 221.92055 * 14 13 10 16 16 C 1.46896 * 111.00403 * 137.57956 * 15 14 13 17 17 C 1.50703 * 109.46760 * 90.63812 * 16 15 14 18 18 O 1.21291 * 120.00423 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99914 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00285 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99718 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00146 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99850 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99864 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46791 * 90.00421 * 24 22 20 26 26 H 1.48497 * 109.47290 * 209.99891 * 24 22 20 27 27 H 1.48492 * 109.47273 * 330.00322 * 24 22 20 28 28 C 1.47961 * 90.76259 * 24.68496 * 15 14 13 29 29 H 1.09004 * 109.46824 * 300.00319 * 1 2 3 30 30 H 1.09004 * 109.46954 * 59.99783 * 1 2 3 31 31 H 1.08994 * 109.47593 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46824 * 239.99212 * 2 1 3 33 33 H 1.08999 * 109.46506 * 120.00121 * 2 1 3 34 34 H 1.09002 * 109.46708 * 296.04552 * 4 3 2 35 35 H 1.08996 * 109.47174 * 56.04577 * 4 3 2 36 36 H 1.09004 * 109.47133 * 176.04544 * 4 3 2 37 37 H 1.09000 * 109.47615 * 69.99745 * 5 3 2 38 38 H 1.09009 * 109.47238 * 309.99799 * 5 3 2 39 39 H 1.09001 * 109.47473 * 59.99856 * 6 5 3 40 40 H 1.09005 * 109.46819 * 299.99594 * 6 5 3 41 41 H 0.97001 * 120.00484 * 359.97438 * 9 7 6 42 42 H 1.08995 * 109.47184 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47227 * 300.05407 * 12 10 9 44 44 H 1.09004 * 109.46864 * 60.04546 * 12 10 9 45 45 H 1.09005 * 112.93660 * 293.43649 * 13 10 9 46 46 H 1.09001 * 113.75723 * 336.23459 * 14 13 10 47 47 H 1.08994 * 113.76342 * 107.60578 * 14 13 10 48 48 H 1.08994 * 109.47232 * 210.63588 * 16 15 14 49 49 H 1.09001 * 109.46816 * 330.64308 * 16 15 14 50 50 H 0.97006 * 119.99926 * 359.97438 * 19 17 16 51 51 H 0.97007 * 119.99699 * 179.97438 * 23 22 20 52 52 H 1.08998 * 113.76224 * 220.99495 * 28 15 14 53 53 H 1.08998 * 113.85675 * 89.64701 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6703 2.0668 -1.2534 5 6 3.4685 1.4310 0.2381 6 6 3.9000 2.8790 0.4791 7 6 5.3864 2.9264 0.7227 8 8 6.0366 1.9027 0.7058 9 7 5.9930 4.1061 0.9604 10 6 7.4380 4.1521 1.1979 11 1 7.7453 3.2592 1.7422 12 6 8.1735 4.2108 -0.1424 13 6 7.7801 5.3948 2.0223 14 6 9.1589 5.3263 2.7032 15 7 8.4933 5.9134 3.8871 16 6 8.9391 5.2551 5.1223 17 6 10.1356 5.9846 5.6767 18 8 10.5735 6.9576 5.0998 19 7 10.7190 5.5560 6.8135 20 6 11.8072 6.2199 7.3181 21 1 12.1971 7.0863 6.8044 22 6 12.4084 5.7783 8.4904 23 7 11.9342 4.7238 9.1151 24 14 13.8914 6.6826 9.1775 25 1 13.4351 7.7477 10.1063 26 1 14.7591 5.7256 9.9101 27 1 14.6590 7.2933 8.0627 28 6 7.1873 5.3785 3.4428 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1771 1.5789 -2.0859 35 1 0.5921 2.0178 -1.4052 36 1 1.9825 3.1098 -1.1988 37 1 3.9926 1.0358 -0.6321 38 1 3.7123 0.8288 1.1135 39 1 3.3760 3.2743 1.3493 40 1 3.6564 3.4811 -0.3963 41 1 5.4730 4.9248 0.9743 42 1 9.2486 4.2446 0.0343 43 1 7.9291 3.3259 -0.7301 44 1 7.8668 5.1042 -0.6863 45 1 7.6010 6.3249 1.4828 46 1 9.5205 4.3103 2.8616 47 1 9.9053 5.9789 2.2505 48 1 8.1320 5.2718 5.8546 49 1 9.2117 4.2222 4.9054 50 1 10.3686 4.7780 7.2750 51 1 12.3541 4.4153 9.9333 52 1 6.3584 6.0728 3.5807 53 1 6.9704 4.3779 3.8167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282736993.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:54 Heat of formation + Delta-G solvation = -38.476022 kcal Electronic energy + Delta-G solvation = -29242.085381 eV Core-core repulsion = 25149.747428 eV Total energy + Delta-G solvation = -4092.337953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.60167 -39.63491 -38.16191 -37.70455 -35.43696 -33.84681 -32.92006 -31.57791 -31.14941 -29.83760 -29.27936 -27.12408 -26.01941 -25.75813 -24.28810 -23.41182 -21.72846 -21.13242 -20.59896 -19.62638 -19.16036 -17.87354 -17.50001 -16.65376 -16.35903 -15.98714 -15.85449 -15.55569 -15.37763 -14.92492 -14.75544 -14.55027 -14.24120 -14.12505 -13.83951 -13.70604 -13.47247 -13.16660 -12.96799 -12.66416 -12.57959 -12.56022 -12.32282 -12.27679 -12.21323 -11.96010 -11.74923 -11.54773 -11.31783 -11.28576 -11.27178 -11.05326 -10.90951 -10.83962 -10.56773 -10.36928 -10.18101 -10.01538 -9.46631 -9.32581 -8.80688 -8.69153 -8.13698 -7.92359 -6.38180 -3.78885 2.41294 2.80038 3.20147 3.28331 3.34331 3.54575 3.91461 3.96793 4.24018 4.32907 4.42665 4.52012 4.56061 4.65950 4.73108 4.77743 4.98759 4.99439 5.05182 5.06530 5.07814 5.12769 5.16522 5.21908 5.27571 5.36370 5.42849 5.46642 5.47601 5.50350 5.53899 5.56450 5.59817 5.68635 5.70740 5.75083 5.78550 5.79752 5.95159 6.00774 6.21429 6.30137 6.31814 6.58266 6.59361 6.60921 7.19623 7.26056 7.58308 7.99549 8.09791 8.66116 9.22088 9.58733 10.11291 10.79740 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.001624 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.328238 B =17242.334294 C =18014.960665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.070 3.930 6 C -0.138 4.138 7 C 0.515 3.485 8 O -0.543 6.543 9 N -0.723 5.723 10 C 0.150 3.850 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.126 4.126 14 C 0.023 3.977 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.005 3.995 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.401 0.599 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.057 0.943 50 H 0.391 0.609 51 H 0.271 0.729 52 H 0.087 0.913 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.001 -7.427 -20.349 30.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.269 5.269 4 C -0.132 4.132 5 C -0.058 4.058 6 C -0.178 4.178 7 C 0.301 3.699 8 O -0.420 6.420 9 N -0.374 5.374 10 C 0.045 3.955 11 H 0.106 0.894 12 C -0.219 4.219 13 C -0.145 4.145 14 C -0.107 4.107 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.124 4.124 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.235 0.765 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.087 0.913 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.075 0.925 50 H 0.224 0.776 51 H 0.081 0.919 52 H 0.106 0.894 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.300 -6.665 -20.014 29.978 hybrid contribution 0.638 -0.975 0.096 1.169 sum -20.662 -7.640 -19.918 29.699 Atomic orbital electron populations 1.21810 0.94723 1.01644 1.02494 1.22086 0.96147 0.88522 1.01044 1.61999 1.13829 1.16266 1.34840 1.22508 1.01607 0.99318 0.89753 1.21810 0.86530 0.95476 1.01965 1.21637 0.92241 0.99335 1.04604 1.20626 0.89931 0.83399 0.75983 1.90720 1.66943 1.33540 1.50770 1.46068 1.09218 1.09364 1.72770 1.21050 0.79603 0.98645 0.96212 0.89387 1.22131 1.00935 1.02023 0.96837 1.23342 0.97866 0.98189 0.95143 1.23916 0.95725 0.99284 0.91737 1.68378 1.01846 1.46577 1.00259 1.22479 0.98776 0.96488 0.94462 1.19695 0.86274 0.87378 0.83476 1.90515 1.65914 1.28659 1.60822 1.41883 1.28196 1.28686 1.21722 1.19697 1.05453 1.11356 1.06260 0.87976 1.25249 0.99495 0.96634 0.96614 1.69617 1.41877 1.24166 1.18811 0.85862 0.80701 0.78772 0.78969 1.20427 1.20967 1.19453 1.23967 0.95107 0.99544 0.93776 0.91744 0.92693 0.92248 0.94853 0.90577 0.95604 0.91040 0.91188 0.93963 0.89866 0.87897 0.88969 0.76512 0.91210 0.92304 0.92395 0.87748 0.91255 0.88798 0.89497 0.92460 0.77568 0.91939 0.89449 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.84 37.16 0.37 -0.41 16 2 C 0.05 0.32 5.68 -3.82 -0.02 0.30 16 3 N -0.54 -3.81 4.76 -242.92 -1.16 -4.97 16 4 C 0.02 0.09 9.13 60.07 0.55 0.64 16 5 C 0.07 0.56 4.25 -3.83 -0.02 0.54 16 6 C -0.14 -0.90 5.62 -27.88 -0.16 -1.06 16 7 C 0.51 4.84 7.79 -10.99 -0.09 4.76 16 8 O -0.54 -7.37 15.64 5.56 0.09 -7.28 16 9 N -0.72 -5.66 4.94 -53.81 -0.27 -5.93 16 10 C 0.15 1.43 2.29 -67.93 -0.16 1.28 16 11 H 0.09 1.05 7.48 -51.93 -0.39 0.66 16 12 C -0.16 -1.47 9.44 37.16 0.35 -1.12 16 13 C -0.13 -1.30 3.35 -89.69 -0.30 -1.60 16 14 C 0.02 0.32 7.41 -2.77 -0.02 0.30 16 15 N -0.45 -7.37 5.65 -239.74 -1.35 -8.73 16 16 C 0.01 0.18 5.28 -4.98 -0.03 0.16 16 17 C 0.45 10.86 7.83 -10.98 -0.09 10.77 16 18 O -0.58 -16.11 16.01 5.55 0.09 -16.02 16 19 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 20 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 24 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.01 0.06 7.38 -2.77 -0.02 0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.26 6.47 -51.93 -0.34 -0.07 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 33 H 0.08 0.49 7.93 -51.93 -0.41 0.08 16 34 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.07 0.35 6.30 -51.93 -0.33 0.02 16 36 H 0.07 0.33 6.47 -51.93 -0.34 -0.01 16 37 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 38 H 0.08 0.76 7.89 -51.92 -0.41 0.35 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.45 6.55 -51.93 -0.34 0.11 16 41 H 0.40 2.13 8.60 -40.82 -0.35 1.78 16 42 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 47 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 49 H 0.06 0.95 7.38 -51.93 -0.38 0.56 16 50 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 51 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 52 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 53 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 LS Contribution 426.03 15.07 6.42 6.42 Total: -1.00 -34.44 426.03 -9.80 -44.24 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -9.39 Total: 8.49 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 0.13 Total: 6.46 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -2.11 Total: -58.63 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.18 Total: -23.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.44 -9.80 -44.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282736993.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.760 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds