Wall clock time and date at job start Sat Apr 11 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46892 * 109.47352 * 2 1 4 4 C 1.46905 * 110.99842 * 293.95346 * 3 2 1 5 5 C 1.46893 * 111.00174 * 170.00086 * 3 2 1 6 6 C 1.52998 * 109.47448 * 190.00030 * 5 3 2 7 7 C 1.50699 * 109.47460 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46716 * 324.99263 * 10 9 7 12 12 C 1.52996 * 109.47499 * 84.99568 * 10 9 7 13 13 C 1.53001 * 109.47094 * 204.99856 * 10 9 7 14 14 C 1.53932 * 113.73468 * 161.73052 * 13 10 9 15 15 N 1.47964 * 86.18072 * 221.92055 * 14 13 10 16 16 C 1.46896 * 111.00403 * 137.57956 * 15 14 13 17 17 C 1.50703 * 109.46760 * 90.63812 * 16 15 14 18 18 O 1.21291 * 120.00423 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99914 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00285 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99718 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00146 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99850 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99864 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46791 * 90.00421 * 24 22 20 26 26 H 1.48497 * 109.47290 * 209.99891 * 24 22 20 27 27 H 1.48492 * 109.47273 * 330.00322 * 24 22 20 28 28 C 1.47961 * 90.76259 * 24.68496 * 15 14 13 29 29 H 1.09004 * 109.46824 * 300.00319 * 1 2 3 30 30 H 1.09004 * 109.46954 * 59.99783 * 1 2 3 31 31 H 1.08994 * 109.47593 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46824 * 239.99212 * 2 1 3 33 33 H 1.08999 * 109.46506 * 120.00121 * 2 1 3 34 34 H 1.09002 * 109.46708 * 296.04552 * 4 3 2 35 35 H 1.08996 * 109.47174 * 56.04577 * 4 3 2 36 36 H 1.09004 * 109.47133 * 176.04544 * 4 3 2 37 37 H 1.09000 * 109.47615 * 69.99745 * 5 3 2 38 38 H 1.09009 * 109.47238 * 309.99799 * 5 3 2 39 39 H 1.09001 * 109.47473 * 59.99856 * 6 5 3 40 40 H 1.09005 * 109.46819 * 299.99594 * 6 5 3 41 41 H 0.97001 * 120.00484 * 359.97438 * 9 7 6 42 42 H 1.08995 * 109.47184 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47227 * 300.05407 * 12 10 9 44 44 H 1.09004 * 109.46864 * 60.04546 * 12 10 9 45 45 H 1.09005 * 112.93660 * 293.43649 * 13 10 9 46 46 H 1.09001 * 113.75723 * 336.23459 * 14 13 10 47 47 H 1.08994 * 113.76342 * 107.60578 * 14 13 10 48 48 H 1.08994 * 109.47232 * 210.63588 * 16 15 14 49 49 H 1.09001 * 109.46816 * 330.64308 * 16 15 14 50 50 H 0.97006 * 119.99926 * 359.97438 * 19 17 16 51 51 H 0.97007 * 119.99699 * 179.97438 * 23 22 20 52 52 H 1.08998 * 113.76224 * 220.99495 * 28 15 14 53 53 H 1.08998 * 113.85675 * 89.64701 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6703 2.0668 -1.2534 5 6 3.4685 1.4310 0.2381 6 6 3.9000 2.8790 0.4791 7 6 5.3864 2.9264 0.7227 8 8 6.0366 1.9027 0.7058 9 7 5.9930 4.1061 0.9604 10 6 7.4380 4.1521 1.1979 11 1 7.7453 3.2592 1.7422 12 6 8.1735 4.2108 -0.1424 13 6 7.7801 5.3948 2.0223 14 6 9.1589 5.3263 2.7032 15 7 8.4933 5.9134 3.8871 16 6 8.9391 5.2551 5.1223 17 6 10.1356 5.9846 5.6767 18 8 10.5735 6.9576 5.0998 19 7 10.7190 5.5560 6.8135 20 6 11.8072 6.2199 7.3181 21 1 12.1971 7.0863 6.8044 22 6 12.4084 5.7783 8.4904 23 7 11.9342 4.7238 9.1151 24 14 13.8914 6.6826 9.1775 25 1 13.4351 7.7477 10.1063 26 1 14.7591 5.7256 9.9101 27 1 14.6590 7.2933 8.0627 28 6 7.1873 5.3785 3.4428 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.1771 1.5789 -2.0859 35 1 0.5921 2.0178 -1.4052 36 1 1.9825 3.1098 -1.1988 37 1 3.9926 1.0358 -0.6321 38 1 3.7123 0.8288 1.1135 39 1 3.3760 3.2743 1.3493 40 1 3.6564 3.4811 -0.3963 41 1 5.4730 4.9248 0.9743 42 1 9.2486 4.2446 0.0343 43 1 7.9291 3.3259 -0.7301 44 1 7.8668 5.1042 -0.6863 45 1 7.6010 6.3249 1.4828 46 1 9.5205 4.3103 2.8616 47 1 9.9053 5.9789 2.2505 48 1 8.1320 5.2718 5.8546 49 1 9.2117 4.2222 4.9054 50 1 10.3686 4.7780 7.2750 51 1 12.3541 4.4153 9.9333 52 1 6.3584 6.0728 3.5807 53 1 6.9704 4.3779 3.8167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282736993.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:53 Heat of formation + Delta-G solvation = -66.307394 kcal Electronic energy + Delta-G solvation = -29243.292240 eV Core-core repulsion = 25149.747428 eV Total energy + Delta-G solvation = -4093.544812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.58215 -40.61849 -39.59068 -38.65803 -36.37080 -35.88628 -33.55615 -33.29736 -32.35421 -30.81125 -30.02399 -27.65086 -27.41434 -26.99521 -25.68941 -24.22616 -22.62069 -21.73883 -21.34847 -20.98902 -20.52497 -19.89246 -18.24434 -17.85345 -17.40829 -16.95862 -16.74675 -16.61611 -16.46520 -16.10025 -16.03832 -15.72020 -15.34006 -15.19965 -14.96194 -14.64215 -14.61273 -14.10295 -14.00307 -13.73690 -13.68767 -13.51095 -13.36118 -13.08551 -12.99789 -12.89156 -12.77899 -12.67285 -12.44909 -12.42697 -12.26713 -12.13904 -11.90564 -11.84621 -11.82278 -11.74526 -11.59940 -11.49979 -10.83515 -10.38391 -10.10338 -10.01803 -9.62209 -9.34595 -8.47137 -5.96233 1.37481 1.40733 1.53878 1.68911 2.04878 2.11008 2.28217 2.77498 3.00032 3.18926 3.35482 3.44719 3.66579 3.84270 3.96441 4.08197 4.14470 4.17498 4.20047 4.22919 4.31078 4.35460 4.39846 4.48613 4.50811 4.53196 4.56666 4.61435 4.62301 4.65428 4.76933 4.79657 4.83405 4.90834 4.96410 5.00530 5.03363 5.05252 5.14493 5.19636 5.33359 5.37799 5.39369 5.43178 5.55553 5.89623 6.04325 6.08211 6.10301 6.59945 6.62252 7.12332 7.32305 7.55688 8.12048 8.70354 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.001624 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.328238 B =17242.334294 C =18014.960665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.548 5.548 4 C 0.014 3.986 5 C 0.074 3.926 6 C -0.126 4.126 7 C 0.513 3.487 8 O -0.589 6.589 9 N -0.709 5.709 10 C 0.158 3.842 11 H 0.065 0.935 12 C -0.157 4.157 13 C -0.097 4.097 14 C 0.013 3.987 15 N -0.481 5.481 16 C 0.024 3.976 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.577 5.577 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.013 3.987 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.417 0.583 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.121 0.879 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.074 0.926 50 H 0.395 0.605 51 H 0.277 0.723 52 H 0.107 0.893 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.746 -6.849 -20.853 32.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.273 5.273 4 C -0.134 4.134 5 C -0.055 4.055 6 C -0.166 4.166 7 C 0.301 3.699 8 O -0.470 6.470 9 N -0.361 5.361 10 C 0.052 3.948 11 H 0.083 0.917 12 C -0.215 4.215 13 C -0.116 4.116 14 C -0.116 4.116 15 N -0.204 5.204 16 C -0.108 4.108 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.115 4.115 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.124 0.876 49 H 0.092 0.908 50 H 0.229 0.771 51 H 0.087 0.913 52 H 0.125 0.875 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.091 -6.078 -20.518 31.483 hybrid contribution 1.156 -1.168 0.215 1.657 sum -21.936 -7.245 -20.303 30.755 Atomic orbital electron populations 1.21766 0.93573 1.02243 1.02503 1.22146 0.97076 0.88392 1.00624 1.62051 1.12900 1.16563 1.35740 1.22588 1.02159 0.99766 0.88853 1.21707 0.87127 0.96178 1.00467 1.21588 0.89962 0.98738 1.06295 1.21116 0.90933 0.82883 0.74971 1.90710 1.68116 1.35240 1.52916 1.45906 1.08503 1.09835 1.71867 1.20810 0.80744 0.97164 0.96072 0.91694 1.22084 1.00745 1.02234 0.96442 1.23127 0.94717 0.99111 0.94690 1.23954 0.97314 0.98650 0.91717 1.68347 1.04490 1.47676 0.99882 1.22343 0.96352 0.96327 0.95800 1.20797 0.87090 0.86834 0.82355 1.90476 1.67465 1.30634 1.61745 1.41969 1.28116 1.28840 1.22507 1.19670 1.07357 1.11874 1.07515 0.90397 1.26052 1.01818 0.97222 0.96201 1.69680 1.42780 1.24725 1.19057 0.84914 0.77289 0.77913 0.78128 1.19552 1.19492 1.19784 1.24050 0.93534 1.00151 0.93800 0.92165 0.92132 0.91433 0.95183 0.91194 0.96033 0.90186 0.89885 0.95646 0.91669 0.86277 0.86557 0.74541 0.91538 0.93532 0.90650 0.86064 0.91322 0.90526 0.87640 0.90806 0.77128 0.91316 0.87494 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.84 71.98 0.71 -0.59 16 2 C 0.05 0.56 5.68 86.31 0.49 1.05 16 3 N -0.55 -6.99 4.76 -922.46 -4.39 -11.38 16 4 C 0.01 0.13 9.13 127.69 1.17 1.29 16 5 C 0.07 1.12 4.25 86.30 0.37 1.49 16 6 C -0.13 -1.37 5.62 29.85 0.17 -1.21 16 7 C 0.51 8.91 7.79 87.66 0.68 9.59 16 8 O -0.59 -16.01 15.64 -3.03 -0.05 -16.06 16 9 N -0.71 -9.40 4.94 -442.54 -2.19 -11.59 16 10 C 0.16 2.78 2.29 44.99 0.10 2.88 16 11 H 0.06 1.51 7.48 -2.39 -0.02 1.49 16 12 C -0.16 -2.66 9.44 71.98 0.68 -1.98 16 13 C -0.10 -1.81 3.35 -10.15 -0.03 -1.84 16 14 C 0.01 0.36 7.41 86.40 0.64 1.00 16 15 N -0.48 -15.31 5.65 -912.40 -5.15 -20.46 16 16 C 0.02 0.84 5.28 85.56 0.45 1.29 16 17 C 0.44 21.86 7.83 87.66 0.69 22.55 16 18 O -0.62 -35.52 16.01 -3.06 -0.05 -35.57 16 19 N -0.58 -30.57 5.29 -306.98 -1.62 -32.19 16 20 C -0.33 -19.50 9.68 84.04 0.81 -18.68 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -50.66 13.05 21.66 0.28 -50.37 16 24 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 C 0.01 0.27 7.38 86.40 0.64 0.91 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.48 6.47 -2.38 -0.02 0.47 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.03 0.38 8.12 -2.39 -0.02 0.36 16 33 H 0.07 0.92 7.93 -2.39 -0.02 0.90 16 34 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.08 0.60 6.30 -2.39 -0.02 0.59 16 36 H 0.08 0.53 6.47 -2.39 -0.02 0.52 16 37 H 0.03 0.46 8.08 -2.39 -0.02 0.44 16 38 H 0.06 1.21 7.89 -2.38 -0.02 1.19 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 0.74 6.55 -2.38 -0.02 0.73 16 41 H 0.42 2.90 8.60 -92.71 -0.80 2.10 16 42 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.07 1.88 7.36 -2.39 -0.02 1.87 16 47 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 48 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 49 H 0.07 2.38 7.38 -2.39 -0.02 2.36 16 50 H 0.40 19.91 7.90 -92.70 -0.73 19.17 16 51 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 52 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 53 H 0.07 1.50 7.88 -2.39 -0.02 1.48 16 Total: -1.00 -76.66 426.03 -3.74 -80.40 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.62 Total: 34.04 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 8.03 Total: 17.48 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -13.08 Total: -126.00 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.10 Total: -51.63 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.66 -3.74 -80.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282736993.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.097 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds