Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.53000 * 109.46931 * 240.00093 * 2 1 3 5 5 C 1.52998 * 109.46946 * 175.00274 * 4 2 1 6 6 N 1.46501 * 109.46995 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99779 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00097 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99822 * 179.97438 * 7 6 5 10 10 C 1.52993 * 109.47256 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.62762 * 56.64930 * 10 9 7 12 12 C 1.55141 * 110.71103 * 179.97438 * 10 9 7 13 13 C 1.54900 * 101.65621 * 154.03408 * 12 10 9 14 14 N 1.47843 * 104.79979 * 322.93455 * 13 12 10 15 15 C 1.46896 * 111.00335 * 146.35907 * 14 13 12 16 16 C 1.47445 * 108.56489 * 24.09039 * 14 13 12 17 17 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 18 18 C 1.46905 * 110.99870 * 274.99736 * 17 2 1 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 2 20 20 O 1.21297 * 120.00124 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00196 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00290 * 180.02562 * 21 19 18 23 23 H 1.07990 * 119.99768 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99812 * 180.02562 * 22 21 19 25 25 N 1.31408 * 119.99864 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99403 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47078 * 60.00286 * 26 24 22 28 28 H 1.48505 * 109.46585 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47705 * 299.99905 * 26 24 22 30 30 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 31 31 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 32 32 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46957 * 294.99682 * 4 2 1 34 34 H 1.08999 * 109.47080 * 55.00118 * 4 2 1 35 35 H 1.09000 * 109.46809 * 299.99498 * 5 4 2 36 36 H 1.08999 * 109.47359 * 60.00014 * 5 4 2 37 37 H 0.96998 * 119.99859 * 359.97438 * 6 5 4 38 38 H 1.08999 * 109.47217 * 299.99985 * 9 7 6 39 39 H 1.08999 * 109.46946 * 59.99858 * 9 7 6 40 40 H 1.08997 * 110.98957 * 272.13264 * 12 10 9 41 41 H 1.09004 * 110.98520 * 35.94368 * 12 10 9 42 42 H 1.09003 * 110.37725 * 204.10133 * 13 12 10 43 43 H 1.08999 * 110.46744 * 81.81063 * 13 12 10 44 44 H 1.08989 * 109.47553 * 299.15691 * 15 14 13 45 45 H 1.08997 * 109.46704 * 59.16181 * 15 14 13 46 46 H 1.09007 * 109.47030 * 179.15178 * 15 14 13 47 47 H 1.09002 * 109.89330 * 239.60420 * 16 14 13 48 48 H 1.09007 * 110.01938 * 118.49572 * 16 14 13 49 49 H 1.00901 * 111.00067 * 38.94911 * 17 2 1 50 50 H 1.09001 * 109.46798 * 300.00327 * 18 17 2 51 51 H 1.08998 * 109.46961 * 60.00043 * 18 17 2 52 52 H 0.97009 * 119.99629 * 359.97438 * 21 19 18 53 53 H 0.97004 * 119.99642 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0530 -1.3034 -2.5102 7 6 5.3740 -1.3396 -2.7754 8 8 6.1584 -0.8004 -2.0237 9 6 5.8763 -2.0499 -4.0059 10 6 7.4010 -1.9419 -4.0704 11 1 7.8532 -2.3433 -3.1634 12 6 7.9496 -2.6655 -5.3284 13 6 9.2765 -1.9048 -5.5733 14 7 8.9747 -0.4988 -5.2301 15 6 10.1481 0.1641 -4.6456 16 6 7.8354 -0.4782 -4.2943 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2226 2.3469 19 6 2.5885 -0.5215 3.5557 20 8 2.8697 -1.6983 3.4697 21 7 2.7287 0.1205 4.7324 22 6 3.1896 -0.5564 5.8320 23 1 3.4399 -1.6041 5.7554 24 6 3.3336 0.1055 7.0453 25 7 3.0285 1.3803 7.1385 26 14 3.9608 -0.8169 8.5436 27 1 5.3175 -1.3518 8.2634 28 1 4.0225 0.1078 9.7040 29 1 3.0405 -1.9400 8.8547 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 3.8531 0.4369 -1.3574 36 1 3.9994 -1.0729 -0.4260 37 1 3.4257 -1.7349 -3.1111 38 1 5.5876 -3.1001 -3.9625 39 1 5.4420 -1.5901 -4.8936 40 1 8.1359 -3.7195 -5.1224 41 1 7.2707 -2.5484 -6.1732 42 1 9.5725 -1.9850 -6.6193 43 1 10.0633 -2.2928 -4.9263 44 1 10.4383 -0.3515 -3.7303 45 1 10.9736 0.1347 -5.3567 46 1 9.9029 1.2012 -4.4164 47 1 7.0118 0.0913 -4.7251 48 1 8.1387 -0.0323 -3.3469 49 1 1.4495 -1.4979 1.4100 50 1 2.7589 1.0462 2.1182 51 1 1.0871 0.6163 2.5525 52 1 2.5042 1.0617 4.8011 53 1 3.1287 1.8423 7.9856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317411244.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = -110.899589 kcal Electronic energy + Delta-G solvation = -29184.096887 eV Core-core repulsion = 25088.618412 eV Total energy + Delta-G solvation = -4095.478475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.03411 -40.23821 -39.58077 -38.28591 -36.07373 -35.69219 -34.31645 -33.33458 -32.58592 -31.01011 -29.81651 -28.08534 -27.96255 -26.08553 -25.69580 -23.90941 -22.06228 -21.98906 -21.56435 -21.13507 -20.72479 -19.93063 -18.06652 -17.68834 -17.33642 -16.95918 -16.76638 -16.66516 -16.37119 -16.20615 -15.99450 -15.67715 -15.27055 -15.07899 -14.88587 -14.55003 -14.41300 -14.21599 -14.05790 -13.84637 -13.64290 -13.56239 -13.49875 -13.10579 -12.85320 -12.75409 -12.65898 -12.54642 -12.45773 -12.33703 -12.23268 -12.17114 -12.09750 -12.07621 -11.75963 -11.71629 -11.60138 -11.52056 -10.77776 -10.36064 -10.03682 -10.01012 -9.34312 -9.24526 -8.48410 -5.97327 1.37823 1.39338 1.50606 1.73273 2.03777 2.27416 2.29640 2.94386 3.07434 3.18654 3.54728 3.56193 3.68750 3.85819 3.90286 4.00859 4.15724 4.23480 4.33085 4.35815 4.38778 4.44573 4.45209 4.49057 4.51808 4.54822 4.58701 4.60567 4.68008 4.76578 4.82775 4.86222 4.91062 4.92242 4.97719 5.04915 5.10567 5.15814 5.21196 5.28196 5.32609 5.36452 5.38584 5.56361 5.90736 5.96223 6.06511 6.13902 6.47037 6.58313 6.66695 7.10533 7.38425 7.54361 8.09887 8.68780 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.001897 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.958293 B =14759.508762 C =16550.989026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 H 0.080 0.920 4 C -0.101 4.101 5 C 0.128 3.872 6 N -0.718 5.718 7 C 0.498 3.502 8 O -0.591 6.591 9 C -0.118 4.118 10 C -0.094 4.094 11 H 0.057 0.943 12 C -0.114 4.114 13 C 0.034 3.966 14 N -0.547 5.547 15 C 0.019 3.981 16 C 0.054 3.946 17 N -0.678 5.678 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.274 1.274 28 H -0.269 1.269 29 H -0.270 1.270 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.417 0.583 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.018 0.982 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.033 0.967 49 H 0.345 0.655 50 H 0.096 0.904 51 H 0.068 0.932 52 H 0.396 0.604 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -3.482 -29.851 30.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 H 0.099 0.901 4 C -0.140 4.140 5 C 0.004 3.996 6 N -0.371 5.371 7 C 0.286 3.714 8 O -0.471 6.471 9 C -0.158 4.158 10 C -0.114 4.114 11 H 0.075 0.925 12 C -0.152 4.152 13 C -0.093 4.093 14 N -0.271 5.271 15 C -0.130 4.130 16 C -0.074 4.074 17 N -0.310 5.310 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.193 1.193 29 H -0.195 1.195 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.254 0.746 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.051 0.949 49 H 0.164 0.836 50 H 0.114 0.886 51 H 0.085 0.915 52 H 0.230 0.770 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.056 -3.361 -29.815 30.075 hybrid contribution -0.528 -0.070 2.283 2.344 sum 1.529 -3.430 -27.533 27.788 Atomic orbital electron populations 1.22428 0.95321 1.02705 1.02957 1.21651 0.93843 0.98003 0.89273 0.90135 1.21679 0.92423 1.02180 0.97684 1.21132 0.95484 0.96013 0.86993 1.45961 1.07529 1.56722 1.26877 1.21477 0.82250 0.79834 0.87830 1.90723 1.56622 1.48006 1.51794 1.21703 0.95296 1.03183 0.95627 1.22096 0.94963 0.95595 0.98790 0.92479 1.22780 0.96210 0.99443 0.96759 1.23176 0.97550 0.86696 1.01871 1.63647 1.06120 1.16539 1.40784 1.22546 0.93362 0.99135 0.97911 1.22771 0.94024 0.96900 0.93701 1.60209 1.58660 1.09126 1.03016 1.21519 1.00861 0.95318 0.88855 1.20956 0.83404 0.88048 0.85198 1.90485 1.56660 1.18414 1.85470 1.41943 1.58322 1.12606 1.08262 1.19626 1.42304 0.95980 0.88583 0.90424 1.26064 0.97222 0.96675 1.01441 1.69668 1.48529 1.09683 1.28187 0.84982 0.78654 0.77886 0.76769 1.19947 1.19333 1.19492 0.93293 0.89762 0.92038 0.90614 0.88040 0.93475 0.94001 0.74604 0.85984 0.85769 0.89132 0.88620 0.88811 0.93942 0.96309 0.89950 0.91812 0.91079 0.94874 0.83629 0.88557 0.91451 0.77013 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.16 71.98 0.66 -2.23 16 2 C 0.08 1.71 2.59 44.92 0.12 1.82 16 3 H 0.08 1.67 7.80 -2.39 -0.02 1.65 16 4 C -0.10 -1.68 5.00 30.59 0.15 -1.53 16 5 C 0.13 3.02 5.56 86.38 0.48 3.51 16 6 N -0.72 -12.98 5.56 -463.06 -2.57 -15.55 16 7 C 0.50 11.23 7.62 87.66 0.67 11.90 16 8 O -0.59 -20.16 14.85 -3.03 -0.05 -20.21 16 9 C -0.12 -1.52 5.09 29.85 0.15 -1.37 16 10 C -0.09 -1.62 2.55 -9.61 -0.02 -1.64 16 11 H 0.06 1.29 8.04 -2.38 -0.02 1.27 16 12 C -0.11 -1.27 6.52 31.98 0.21 -1.06 16 13 C 0.03 0.48 6.73 86.77 0.58 1.07 16 14 N -0.55 -10.32 5.44 -911.72 -4.96 -15.28 16 15 C 0.02 0.34 9.12 127.69 1.16 1.51 16 16 C 0.05 1.15 5.49 86.65 0.48 1.62 16 17 N -0.68 -20.83 5.33 -495.56 -2.64 -23.47 16 18 C 0.07 2.34 5.97 85.55 0.51 2.85 16 19 C 0.44 21.44 7.82 87.66 0.69 22.13 16 20 O -0.62 -35.62 15.78 -3.08 -0.05 -35.66 16 21 N -0.57 -30.45 5.29 -306.99 -1.62 -32.07 16 22 C -0.34 -19.63 9.68 84.04 0.81 -18.81 16 23 H 0.08 4.83 7.16 -2.92 -0.02 4.81 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 25 N -0.92 -50.76 13.05 21.66 0.28 -50.47 16 26 Si 0.99 44.06 29.55 68.60 2.03 46.09 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 30 H 0.05 0.91 7.45 -2.38 -0.02 0.89 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 37 H 0.42 3.99 8.47 -92.71 -0.79 3.20 16 38 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.12 0.93 8.06 -2.39 -0.02 0.91 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 0.76 8.05 -2.38 -0.02 0.74 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.04 0.63 7.78 -2.39 -0.02 0.61 16 44 H 0.02 0.36 8.10 -2.39 -0.02 0.34 16 45 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.07 1.49 7.77 -2.39 -0.02 1.47 16 48 H 0.03 0.91 7.11 -2.38 -0.02 0.89 16 49 H 0.34 11.08 8.17 -89.69 -0.73 10.35 16 50 H 0.10 3.18 8.06 -2.39 -0.02 3.16 16 51 H 0.07 2.05 7.44 -2.39 -0.02 2.03 16 52 H 0.40 19.93 7.90 -92.70 -0.73 19.20 16 53 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -79.37 425.39 -3.81 -83.17 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -1.34 Total: 44.02 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 7.11 Total: 19.44 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -11.52 Total: -136.85 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -0.09 Total: -55.87 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -79.37 -3.81 -83.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317411244.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.727 kcal (2) G-P(sol) polarization free energy of solvation -79.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds