Wall clock time and date at job start Sat Apr 11 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47187 * 2 1 4 4 C 1.52998 * 109.47111 * 119.99906 * 2 1 3 5 5 C 1.52996 * 109.47227 * 185.00028 * 4 2 1 6 6 N 1.46505 * 109.47309 * 180.02562 * 5 4 2 7 7 C 1.34771 * 119.99914 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00311 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00062 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47457 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.62692 * 303.35443 * 10 9 7 12 12 C 1.55422 * 110.69515 * 180.02562 * 10 9 7 13 13 C 1.54908 * 101.52379 * 205.97380 * 12 10 9 14 14 N 1.47846 * 104.89238 * 37.06612 * 13 12 10 15 15 C 1.46900 * 111.00020 * 213.57993 * 14 13 12 16 16 C 1.47448 * 108.56553 * 335.84749 * 14 13 12 17 17 N 1.46904 * 109.47025 * 239.99953 * 2 1 3 18 18 C 1.46901 * 110.99738 * 85.00186 * 17 2 1 19 19 C 1.50698 * 109.46586 * 179.97438 * 18 17 2 20 20 O 1.21288 * 120.00243 * 359.97438 * 19 18 17 21 21 N 1.34787 * 119.99630 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99830 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00054 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00011 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00157 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00198 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47119 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47381 * 119.99982 * 26 24 22 29 29 H 1.48502 * 109.47511 * 240.00607 * 26 24 22 30 30 H 1.09000 * 109.47112 * 300.00087 * 1 2 3 31 31 H 1.09000 * 109.47357 * 59.99996 * 1 2 3 32 32 H 1.09005 * 109.47237 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47136 * 64.99878 * 4 2 1 34 34 H 1.08998 * 109.47337 * 304.99858 * 4 2 1 35 35 H 1.08996 * 109.47100 * 59.99928 * 5 4 2 36 36 H 1.09007 * 109.47017 * 300.00113 * 5 4 2 37 37 H 0.96993 * 119.99694 * 0.02562 * 6 5 4 38 38 H 1.08995 * 109.46605 * 59.99897 * 9 7 6 39 39 H 1.09004 * 109.46534 * 300.00351 * 9 7 6 40 40 H 1.08998 * 111.10859 * 87.90533 * 12 10 9 41 41 H 1.08998 * 111.00401 * 323.99651 * 12 10 9 42 42 H 1.09002 * 110.37460 * 278.18013 * 13 12 10 43 43 H 1.08999 * 110.37548 * 155.95084 * 13 12 10 44 44 H 1.09004 * 109.46560 * 59.87397 * 15 14 13 45 45 H 1.08994 * 109.46901 * 179.86935 * 15 14 13 46 46 H 1.08999 * 109.47478 * 299.87719 * 15 14 13 47 47 H 1.08999 * 109.88737 * 120.39623 * 16 14 13 48 48 H 1.09000 * 109.88899 * 241.58505 * 16 14 13 49 49 H 1.00898 * 110.99305 * 208.95228 * 17 2 1 50 50 H 1.09002 * 109.47037 * 299.99332 * 18 17 2 51 51 H 1.08999 * 109.47257 * 60.00199 * 18 17 2 52 52 H 0.96994 * 119.99928 * 359.97438 * 21 19 18 53 53 H 0.96994 * 120.00306 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0532 -1.3044 2.5096 7 6 5.3741 -1.3407 2.7747 8 8 6.1584 -0.8008 2.0235 9 6 5.8765 -2.0511 4.0051 10 6 7.4013 -1.9433 4.0695 11 1 7.8533 -2.3446 3.1624 12 6 7.9504 -2.6683 5.3298 13 6 9.2768 -1.9057 5.5723 14 7 8.9750 -0.4998 5.2286 15 6 10.1485 0.1628 4.6439 16 6 7.8358 -0.4794 4.2927 17 7 2.0196 -0.6925 -1.1995 18 6 2.0824 0.2226 -2.3469 19 6 2.5885 -0.5216 -3.5557 20 8 2.8696 -1.6983 -3.4696 21 7 2.7286 0.1206 -4.7324 22 6 3.1895 -0.5562 -5.8319 23 1 3.4398 -1.6041 -5.7554 24 6 3.3335 0.1056 -7.0452 25 7 3.0284 1.3804 -7.1386 26 14 3.9621 -0.8164 -8.5433 27 1 4.2325 -2.2299 -8.1770 28 1 2.9383 -0.7712 -9.6179 29 1 5.2147 -0.1813 -9.0259 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1370 35 1 3.8531 0.4369 1.3573 36 1 3.9994 -1.0728 0.4259 37 1 3.4259 -1.7365 3.1101 38 1 5.5876 -3.1012 3.9617 39 1 5.4422 -1.5912 4.8929 40 1 8.1379 -3.7225 5.1257 41 1 7.2723 -2.5505 6.1749 42 1 10.0621 -2.2947 4.9241 43 1 9.5747 -1.9852 6.6177 44 1 10.4491 -0.3636 3.7380 45 1 9.8982 1.1948 4.3983 46 1 10.9689 0.1487 5.3614 47 1 7.0123 0.0902 4.7234 48 1 8.1417 -0.0349 3.3457 49 1 2.9173 -1.1205 -1.0287 50 1 1.0870 0.6163 -2.5526 51 1 2.7589 1.0462 -2.1182 52 1 2.5034 1.0615 -4.8013 53 1 3.1293 1.8425 -7.9854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317411247.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:25 Heat of formation + Delta-G solvation = -109.482897 kcal Electronic energy + Delta-G solvation = -29210.013418 eV Core-core repulsion = 25114.596375 eV Total energy + Delta-G solvation = -4095.417042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.10057 -40.27037 -39.61842 -38.37371 -36.08264 -35.67868 -34.32929 -33.35262 -32.60934 -31.05727 -29.92181 -28.21434 -27.99587 -26.13954 -25.71404 -23.97570 -22.05888 -21.96159 -21.40199 -21.16505 -20.73056 -19.94731 -18.11376 -17.81520 -17.43538 -17.14360 -16.87925 -16.70683 -16.44095 -16.24453 -16.04531 -15.66827 -15.30629 -15.11631 -14.97693 -14.62073 -14.42356 -14.23097 -14.08601 -13.89559 -13.66101 -13.53842 -13.37089 -13.16274 -12.89378 -12.76831 -12.61353 -12.55310 -12.43963 -12.32052 -12.24659 -12.21197 -12.12706 -12.08232 -11.81657 -11.70976 -11.61487 -11.54280 -10.82108 -10.37817 -10.11918 -10.04692 -9.35505 -9.34422 -8.49570 -5.98540 1.34239 1.39195 1.53844 1.66629 2.01462 2.19094 2.26916 2.91152 3.06210 3.17268 3.48559 3.53262 3.67135 3.80889 3.83465 3.93574 4.03823 4.11669 4.27891 4.33602 4.37279 4.42000 4.43556 4.46929 4.50775 4.53298 4.53450 4.59900 4.65271 4.69787 4.81366 4.84893 4.91171 4.95717 4.96324 5.01535 5.05317 5.09427 5.14211 5.19968 5.34565 5.38134 5.44179 5.46909 5.89198 5.95218 6.05150 6.11345 6.38646 6.56865 6.58451 7.09438 7.30300 7.52569 8.07953 8.68138 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.001898 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.194356 B =14751.622542 C =16537.731887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.050 0.950 4 C -0.116 4.116 5 C 0.116 3.884 6 N -0.716 5.716 7 C 0.500 3.500 8 O -0.589 6.589 9 C -0.119 4.119 10 C -0.094 4.094 11 H 0.058 0.942 12 C -0.114 4.114 13 C 0.034 3.966 14 N -0.547 5.547 15 C 0.019 3.981 16 C 0.054 3.946 17 N -0.679 5.679 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.274 1.274 28 H -0.268 1.268 29 H -0.270 1.270 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.419 0.581 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.042 0.958 43 H 0.093 0.907 44 H 0.019 0.981 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.033 0.967 49 H 0.340 0.660 50 H 0.105 0.895 51 H 0.060 0.940 52 H 0.396 0.604 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -3.053 30.513 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.369 5.369 7 C 0.288 3.712 8 O -0.469 6.469 9 C -0.159 4.159 10 C -0.115 4.115 11 H 0.076 0.924 12 C -0.152 4.152 13 C -0.093 4.093 14 N -0.271 5.271 15 C -0.129 4.129 16 C -0.074 4.074 17 N -0.314 5.314 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.199 1.199 28 H -0.193 1.193 29 H -0.196 1.196 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.257 0.743 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.060 0.940 43 H 0.111 0.889 44 H 0.037 0.963 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.052 0.948 49 H 0.160 0.840 50 H 0.123 0.877 51 H 0.078 0.922 52 H 0.230 0.770 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.713 -3.268 30.161 30.459 hybrid contribution 1.136 0.350 -1.866 2.213 sum 3.849 -2.918 28.295 28.704 Atomic orbital electron populations 1.21776 0.93094 1.02378 1.02093 1.21647 0.97011 0.96031 0.88123 0.93184 1.21878 0.92120 1.02954 0.98467 1.21287 0.95407 0.96635 0.87509 1.45869 1.07633 1.56699 1.26674 1.21494 0.82115 0.79734 0.87844 1.90728 1.56585 1.47862 1.51749 1.21710 0.95307 1.03261 0.95573 1.22152 0.94922 0.95564 0.98813 0.92366 1.22829 0.96179 0.99433 0.96755 1.23176 0.97594 0.86701 1.01854 1.63643 1.06135 1.16548 1.40812 1.22548 0.93348 0.99084 0.97968 1.22780 0.94019 0.96905 0.93710 1.60268 1.34511 1.32594 1.04009 1.21579 1.02124 0.93709 0.89384 1.20922 0.83225 0.88009 0.85478 1.90482 1.56676 1.18274 1.85613 1.41944 1.58228 1.12603 1.08274 1.19703 1.42130 0.95971 0.88600 0.90419 1.26074 0.97220 0.96681 1.01429 1.69675 1.48565 1.09700 1.28130 0.84854 0.78212 0.77969 0.77180 1.19871 1.19349 1.19566 0.89841 0.93582 0.92489 0.89848 0.87221 0.92644 0.94455 0.74305 0.85855 0.85712 0.89092 0.88643 0.93951 0.88876 0.96260 0.91828 0.89993 0.91057 0.94817 0.83963 0.87678 0.92189 0.76981 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.41 71.98 0.68 -1.90 16 2 C 0.08 1.77 2.65 44.91 0.12 1.89 16 3 H 0.05 1.06 7.80 -2.39 -0.02 1.04 16 4 C -0.12 -1.85 4.92 30.59 0.15 -1.70 16 5 C 0.12 2.44 5.50 86.38 0.48 2.91 16 6 N -0.72 -11.42 5.56 -463.05 -2.57 -13.99 16 7 C 0.50 10.26 7.62 87.66 0.67 10.93 16 8 O -0.59 -18.68 14.85 -3.05 -0.05 -18.73 16 9 C -0.12 -1.36 5.10 29.85 0.15 -1.21 16 10 C -0.09 -1.50 2.55 -9.51 -0.02 -1.53 16 11 H 0.06 1.23 8.04 -2.38 -0.02 1.21 16 12 C -0.11 -1.17 6.55 32.08 0.21 -0.96 16 13 C 0.03 0.46 6.72 86.77 0.58 1.04 16 14 N -0.55 -9.90 5.44 -911.68 -4.96 -14.86 16 15 C 0.02 0.33 9.13 127.69 1.17 1.49 16 16 C 0.05 1.08 5.49 86.65 0.48 1.56 16 17 N -0.68 -21.79 5.93 -495.58 -2.94 -24.73 16 18 C 0.06 2.32 5.97 85.56 0.51 2.83 16 19 C 0.44 21.74 7.82 87.65 0.69 22.42 16 20 O -0.62 -36.07 15.78 -3.06 -0.05 -36.12 16 21 N -0.57 -30.62 5.29 -306.98 -1.62 -32.24 16 22 C -0.33 -19.66 9.68 84.04 0.81 -18.85 16 23 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 26 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.98 7.45 -2.39 -0.02 0.97 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.04 1.06 6.43 -2.38 -0.02 1.04 16 37 H 0.42 3.30 8.47 -92.71 -0.79 2.51 16 38 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.12 0.78 8.06 -2.39 -0.02 0.76 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 0.69 8.05 -2.39 -0.02 0.67 16 42 H 0.04 0.60 7.77 -2.39 -0.02 0.58 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.02 0.35 8.08 -2.39 -0.02 0.33 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.41 7.77 -2.39 -0.02 1.39 16 48 H 0.03 0.88 7.11 -2.39 -0.02 0.87 16 49 H 0.34 11.95 6.17 -89.70 -0.55 11.39 16 50 H 0.11 3.40 7.44 -2.39 -0.02 3.38 16 51 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 52 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 53 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -79.22 422.85 -3.91 -83.13 By element: Atomic # 1 Polarization: 44.46 SS G_CDS: -1.16 Total: 43.30 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 7.13 Total: 18.61 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -11.82 Total: -136.34 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -0.09 Total: -54.85 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -79.22 -3.91 -83.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317411247.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.356 kcal (2) G-P(sol) polarization free energy of solvation -79.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds