Wall clock time and date at job start Sat Apr 11 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47470 * 2 1 4 4 O 1.21283 * 119.99437 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00396 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00089 * 180.02562 * 5 3 2 7 7 H 1.08995 * 109.46802 * 34.99886 * 6 5 3 8 8 C 1.52996 * 109.46914 * 275.00070 * 6 5 3 9 9 C 1.50694 * 109.46953 * 155.00216 * 6 5 3 10 10 O 1.21280 * 120.00170 * 0.02562 * 9 6 5 11 11 N 1.34781 * 119.99924 * 179.97438 * 9 6 5 12 12 C 1.46495 * 119.99799 * 359.97438 * 11 9 6 13 13 C 1.46498 * 119.99773 * 180.02562 * 11 9 6 14 14 C 1.52994 * 109.47212 * 269.99544 * 13 11 9 15 15 N 1.46897 * 109.47643 * 180.02562 * 14 13 11 16 16 C 1.46898 * 111.00639 * 170.00553 * 15 14 13 17 17 C 1.53232 * 109.34077 * 172.74773 * 16 15 14 18 18 N 1.47078 * 108.52568 * 53.82710 * 17 16 15 19 19 C 1.36943 * 120.88200 * 128.79038 * 18 17 16 20 20 H 1.07999 * 119.99657 * 206.58893 * 19 18 17 21 21 C 1.38807 * 119.99782 * 26.59378 * 19 18 17 22 22 N 1.31618 * 120.00188 * 17.00985 * 21 19 18 23 23 Si 1.86799 * 119.99686 * 197.00832 * 21 19 18 24 24 H 1.48496 * 109.47164 * 60.00292 * 23 21 19 25 25 H 1.48510 * 109.47314 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47403 * 299.99703 * 23 21 19 27 27 C 1.47074 * 118.23475 * 308.81659 * 18 17 16 28 28 C 1.46902 * 110.99959 * 45.69494 * 15 14 13 29 29 H 1.08999 * 109.47312 * 59.99642 * 1 2 3 30 30 H 1.08995 * 109.47303 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46597 * 299.99791 * 1 2 3 32 32 H 1.09002 * 109.46597 * 240.00208 * 2 1 3 33 33 H 1.08999 * 109.47312 * 120.00358 * 2 1 3 34 34 H 0.96994 * 119.99638 * 0.02562 * 5 3 2 35 35 H 1.09004 * 109.47250 * 180.02562 * 8 6 5 36 36 H 1.09000 * 109.47750 * 300.00025 * 8 6 5 37 37 H 1.09001 * 109.47351 * 59.99889 * 8 6 5 38 38 H 1.08999 * 109.47609 * 269.99874 * 12 11 9 39 39 H 1.09001 * 109.46967 * 30.00913 * 12 11 9 40 40 H 1.09005 * 109.47070 * 149.99868 * 12 11 9 41 41 H 1.09000 * 109.47053 * 150.00002 * 13 11 9 42 42 H 1.09000 * 109.47634 * 29.99827 * 13 11 9 43 43 H 1.09004 * 109.47176 * 60.00076 * 14 13 11 44 44 H 1.09005 * 109.47474 * 300.00797 * 14 13 11 45 45 H 1.08998 * 109.49451 * 52.78086 * 16 15 14 46 46 H 1.09003 * 109.48501 * 292.70700 * 16 15 14 47 47 H 1.09004 * 109.62738 * 173.54003 * 17 16 15 48 48 H 1.09000 * 109.62796 * 293.91651 * 17 16 15 49 49 H 0.97006 * 119.99914 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.63035 * 170.89298 * 27 18 17 51 51 H 1.08997 * 109.62936 * 291.47090 * 27 18 17 52 52 H 1.09000 * 109.48602 * 67.29911 * 28 15 14 53 53 H 1.09000 * 109.49677 * 307.22315 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0483 0.0011 7 1 3.1731 3.6712 0.5905 8 6 3.8978 3.5714 -1.4357 9 6 5.2271 3.0924 0.6020 10 8 5.7521 2.0707 0.9910 11 7 5.8794 4.2672 0.7061 12 6 5.2459 5.5011 0.2347 13 6 7.2225 4.3100 1.2898 14 6 7.1154 4.5282 2.8003 15 7 8.4621 4.5717 3.3855 16 6 8.4136 5.0129 4.7858 17 6 9.8057 4.8720 5.4107 18 7 10.7721 5.5897 4.5656 19 6 11.6360 6.5040 5.1068 20 1 12.0203 7.3096 4.4986 21 6 12.0179 6.3954 6.4368 22 7 11.8363 5.2634 7.0833 23 14 12.7896 7.8558 7.3092 24 1 11.8386 8.9963 7.3010 25 1 13.1044 7.4846 8.7123 26 1 14.0387 8.2477 6.6082 27 6 10.7856 5.2996 3.1238 28 6 9.3550 5.4237 2.5888 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9877 0.9298 0.0005 35 1 4.2615 4.5989 -1.4354 36 1 4.5705 2.9484 -2.0252 37 1 2.8987 3.5394 -1.8704 38 1 5.4988 5.6621 -0.8132 39 1 4.1642 5.4168 0.3387 40 1 5.6033 6.3427 0.8281 41 1 7.7866 5.1290 0.8435 42 1 7.7339 3.3675 1.0941 43 1 6.5512 3.7092 3.2466 44 1 6.6039 5.4706 2.9960 45 1 7.7034 4.3967 5.3370 46 1 8.0999 6.0560 4.8277 47 1 9.8031 5.3037 6.4116 48 1 10.0765 3.8178 5.4675 49 1 12.1036 5.1874 8.0128 50 1 11.4309 6.0141 2.6126 51 1 11.1521 4.2867 2.9575 52 1 9.0282 6.4610 2.6614 53 1 9.3274 5.1054 1.5467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481469310.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:36 Heat of formation + Delta-G solvation = -54.388083 kcal Electronic energy + Delta-G solvation = -30395.094502 eV Core-core repulsion = 26302.066550 eV Total energy + Delta-G solvation = -4093.027952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.70599 -40.46791 -39.71760 -37.22410 -36.31499 -35.89341 -33.85361 -33.38993 -32.19908 -31.55439 -30.09149 -28.16291 -27.58392 -26.02033 -25.41888 -24.42717 -24.00890 -22.60523 -21.33586 -20.83340 -20.40206 -18.80560 -18.68541 -17.91226 -17.33749 -17.25017 -16.81529 -16.53598 -16.30008 -16.00031 -15.83396 -15.41557 -15.30757 -15.15782 -15.00489 -14.93819 -14.62868 -14.40551 -14.14501 -13.86686 -13.60024 -13.55294 -13.15108 -13.14325 -13.09986 -13.00265 -12.80334 -12.63165 -12.59129 -12.46024 -12.36810 -12.15537 -12.07253 -12.02663 -11.91838 -11.53704 -11.44571 -11.02998 -10.89702 -10.58615 -10.25489 -9.79217 -9.28652 -8.69319 -7.87932 -5.33021 1.38881 1.46531 1.48981 1.54787 1.55980 1.69008 2.27852 2.50630 3.01466 3.27058 3.28726 3.66082 3.75653 3.89165 3.98195 3.99888 4.03721 4.19374 4.22675 4.27397 4.28101 4.32062 4.40642 4.53046 4.54886 4.58228 4.66478 4.68093 4.71194 4.77074 4.81149 4.87425 4.89745 4.90384 5.00691 5.02377 5.06751 5.17003 5.18191 5.25734 5.34521 5.37338 5.40423 5.60495 5.65539 6.12609 6.18214 6.25675 6.36477 6.45200 6.94704 7.12038 7.17186 7.82966 8.37765 9.19001 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026411 B = 0.001883 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.890189 B =14864.565236 C =15328.343377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.511 3.489 4 O -0.580 6.580 5 N -0.714 5.714 6 C 0.128 3.872 7 H 0.109 0.891 8 C -0.162 4.162 9 C 0.508 3.492 10 O -0.568 6.568 11 N -0.605 5.605 12 C 0.061 3.939 13 C 0.121 3.879 14 C 0.053 3.947 15 N -0.543 5.543 16 C 0.054 3.946 17 C 0.186 3.814 18 N -0.613 5.613 19 C -0.264 4.264 20 H 0.071 0.929 21 C -0.054 4.054 22 N -0.938 5.938 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.141 3.859 28 C 0.050 3.950 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.414 0.586 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.024 0.976 47 H 0.058 0.942 48 H -0.005 1.005 49 H 0.250 0.750 50 H 0.065 0.935 51 H 0.013 0.987 52 H 0.031 0.969 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.973 -4.698 -20.398 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.300 3.700 4 O -0.459 6.459 5 N -0.368 5.368 6 C 0.020 3.980 7 H 0.127 0.873 8 C -0.220 4.220 9 C 0.295 3.705 10 O -0.447 6.447 11 N -0.337 5.337 12 C -0.080 4.080 13 C -0.002 4.002 14 C -0.076 4.076 15 N -0.269 5.269 16 C -0.075 4.075 17 C 0.060 3.940 18 N -0.337 5.337 19 C -0.394 4.394 20 H 0.089 0.911 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.799 3.201 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.199 1.199 27 C 0.016 3.984 28 C -0.079 4.079 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.252 0.748 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.076 0.924 48 H 0.013 0.987 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.031 0.969 52 H 0.049 0.951 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.995 -5.059 -20.057 29.473 hybrid contribution 0.701 0.937 1.237 1.703 sum -20.294 -4.122 -18.820 27.983 Atomic orbital electron populations 1.21531 0.93161 1.02655 1.02018 1.21704 0.98334 0.91424 1.06494 1.21440 0.81269 0.93159 0.74136 1.90679 1.56030 1.47890 1.51351 1.45912 1.07720 1.08055 1.75066 1.20750 0.91743 0.85929 0.99610 0.87320 1.22341 1.03576 1.03620 0.92486 1.20975 0.87876 0.83366 0.78239 1.90717 1.68974 1.34566 1.50457 1.47818 1.17279 1.08163 1.60426 1.22384 0.99144 0.85064 1.01440 1.21560 0.83068 1.04017 0.91554 1.22332 0.89787 0.99948 0.95561 1.61888 1.09690 1.53062 1.02238 1.22537 0.98671 0.97169 0.89123 1.20586 0.85920 0.93359 0.94165 1.44391 1.38904 1.47104 1.03342 1.19531 1.21099 1.03483 0.95291 0.91121 1.25839 1.00572 0.98978 0.99517 1.70196 1.52615 1.24970 1.10603 0.85294 0.78542 0.79191 0.77122 1.20392 1.22158 1.19928 1.21175 0.95050 0.97668 0.84546 1.22624 0.93347 0.94306 0.97645 0.93005 0.89815 0.93630 0.86314 0.87231 0.74808 0.87900 0.91649 0.91303 0.89201 0.89449 0.89794 0.87625 0.90646 0.92607 0.94366 0.91073 0.95740 0.92416 0.98700 0.94097 0.91652 0.96895 0.95079 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.20 71.98 0.66 -0.93 16 2 C -0.14 -1.47 6.42 29.85 0.19 -1.27 16 3 C 0.51 9.06 7.79 87.66 0.68 9.74 16 4 O -0.58 -14.33 15.64 -3.04 -0.05 -14.38 16 5 N -0.71 -11.86 4.95 -446.12 -2.21 -14.06 16 6 C 0.13 2.11 2.18 44.24 0.10 2.21 16 7 H 0.11 1.91 6.84 -2.39 -0.02 1.89 16 8 C -0.16 -1.86 9.12 71.98 0.66 -1.20 16 9 C 0.51 10.62 7.14 87.65 0.63 11.25 16 10 O -0.57 -16.31 15.42 -3.03 -0.05 -16.36 16 11 N -0.60 -10.57 2.87 -846.79 -2.43 -13.01 16 12 C 0.06 0.57 8.80 127.77 1.12 1.69 16 13 C 0.12 2.63 4.66 86.38 0.40 3.03 16 14 C 0.05 1.44 5.59 86.30 0.48 1.93 16 15 N -0.54 -18.94 4.78 -895.28 -4.28 -23.22 16 16 C 0.05 2.18 5.58 86.38 0.48 2.66 16 17 C 0.19 9.43 5.42 86.35 0.47 9.90 16 18 N -0.61 -31.63 3.04 -698.16 -2.12 -33.75 16 19 C -0.26 -14.66 9.63 84.03 0.81 -13.85 16 20 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 21 C -0.05 -3.05 4.94 84.86 0.42 -2.63 16 22 N -0.94 -56.62 11.15 21.65 0.24 -56.38 16 23 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 27 C 0.14 5.90 6.69 86.35 0.58 6.48 16 28 C 0.05 1.61 5.04 86.38 0.44 2.05 16 29 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.41 6.36 7.79 -92.71 -0.72 5.64 16 35 H 0.10 0.73 4.53 -2.38 -0.01 0.72 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.45 6.95 -2.39 -0.02 0.44 16 39 H 0.09 0.65 6.01 -2.39 -0.01 0.63 16 40 H 0.08 0.73 8.07 -2.38 -0.02 0.71 16 41 H 0.11 1.85 6.11 -2.39 -0.01 1.83 16 42 H 0.08 2.00 7.42 -2.39 -0.02 1.98 16 43 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.04 0.98 8.08 -2.38 -0.02 0.96 16 45 H 0.07 2.65 8.11 -2.39 -0.02 2.63 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 3.26 6.12 -2.38 -0.01 3.24 16 48 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 50 H 0.07 2.56 7.95 -2.38 -0.02 2.54 16 51 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.10 2.59 5.73 -2.39 -0.01 2.58 16 Total: -1.00 -76.48 410.48 -0.57 -77.05 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.18 Total: 15.96 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 8.12 Total: 31.04 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -10.80 Total: -140.42 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.09 Total: -30.73 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.48 -0.57 -77.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481469310.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.667 kcal (2) G-P(sol) polarization free energy of solvation -76.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds