Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46911 * 2 1 4 4 C 1.53003 * 109.47070 * 240.00007 * 2 1 3 5 5 N 1.46900 * 109.46836 * 184.99622 * 4 2 1 6 6 C 1.46898 * 111.00191 * 293.95584 * 5 4 2 7 7 C 1.46901 * 110.99614 * 170.00153 * 5 4 2 8 8 C 1.50708 * 109.46920 * 189.99832 * 7 5 4 9 9 O 1.21287 * 119.99791 * 0.02562 * 8 7 5 10 10 N 1.34771 * 119.99689 * 180.02562 * 8 7 5 11 11 C 1.37098 * 119.99630 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00079 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99732 * 179.97438 * 11 10 8 14 14 N 1.31421 * 119.99564 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00276 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47104 * 89.99933 * 15 13 11 17 17 H 1.48495 * 109.47322 * 209.99698 * 15 13 11 18 18 H 1.48493 * 109.47178 * 329.99876 * 15 13 11 19 19 N 1.46494 * 109.47350 * 119.99922 * 2 1 3 20 20 C 1.34773 * 120.00178 * 275.00391 * 19 2 1 21 21 O 1.21285 * 119.99933 * 359.97438 * 20 19 2 22 22 C 1.50702 * 120.00219 * 180.02562 * 20 19 2 23 23 H 1.09001 * 110.27266 * 334.01024 * 22 20 19 24 24 C 1.54593 * 110.30994 * 211.92384 * 22 20 19 25 25 C 1.54934 * 102.92447 * 219.02544 * 24 22 20 26 26 N 1.48533 * 103.22464 * 37.41152 * 25 24 22 27 27 C 1.46903 * 111.00097 * 200.28130 * 26 25 24 28 28 C 1.47901 * 105.82221 * 320.79547 * 26 25 24 29 29 H 1.09002 * 109.92239 * 265.97719 * 28 26 25 30 30 C 1.53000 * 109.92225 * 144.68130 * 28 26 25 31 31 H 1.08994 * 109.47299 * 299.99809 * 1 2 3 32 32 H 1.08997 * 109.47249 * 60.00106 * 1 2 3 33 33 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47435 * 305.00028 * 4 2 1 35 35 H 1.09005 * 109.46740 * 65.00339 * 4 2 1 36 36 H 1.08999 * 109.47365 * 60.00224 * 6 5 4 37 37 H 1.08996 * 109.47402 * 180.02562 * 6 5 4 38 38 H 1.09004 * 109.47091 * 299.99960 * 6 5 4 39 39 H 1.08991 * 109.47239 * 310.00271 * 7 5 4 40 40 H 1.09000 * 109.47147 * 70.00294 * 7 5 4 41 41 H 0.96994 * 120.00626 * 359.97438 * 10 8 7 42 42 H 0.97000 * 119.99535 * 180.02562 * 14 13 11 43 43 H 0.97007 * 119.99761 * 94.99963 * 19 2 1 44 44 H 1.09002 * 110.72710 * 100.66242 * 24 22 20 45 45 H 1.09006 * 110.72599 * 337.38599 * 24 22 20 46 46 H 1.09004 * 110.66764 * 278.98387 * 25 24 22 47 47 H 1.08996 * 110.66989 * 155.84383 * 25 24 22 48 48 H 1.09000 * 109.46786 * 59.87843 * 27 26 25 49 49 H 1.08996 * 109.47270 * 299.87495 * 27 26 25 50 50 H 1.09006 * 109.47126 * 179.87437 * 27 26 25 51 51 H 1.09003 * 109.46932 * 63.10247 * 30 28 26 52 52 H 1.08994 * 109.47733 * 183.10605 * 30 28 26 53 53 H 1.09004 * 109.46770 * 303.11076 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.1310 0.4994 -1.2720 7 6 4.0108 -1.7143 -2.2455 8 6 5.4726 -1.9935 -2.0079 9 8 6.0365 -1.5018 -1.0534 10 7 6.1530 -2.7896 -2.8562 11 6 7.4827 -3.0441 -2.6398 12 1 7.9849 -2.6062 -1.7898 13 6 8.1841 -3.8653 -3.5141 14 7 9.4589 -4.1087 -3.3068 15 14 7.3154 -4.6231 -4.9838 16 1 7.4242 -3.7086 -6.1488 17 1 7.9480 -5.9249 -5.3157 18 1 5.8832 -4.8381 -4.6555 19 7 2.0184 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.8590 1.1586 2.4115 22 6 2.6500 -0.7285 3.5874 23 1 2.4311 -1.7944 3.5242 24 6 2.0077 -0.1232 4.8567 25 6 3.1780 -0.1253 5.8720 26 7 4.3556 0.2168 5.0339 27 6 5.6048 -0.1952 5.6879 28 6 4.1640 -0.5029 3.7561 29 1 4.6809 -1.4620 3.7888 30 6 4.6973 0.3415 2.5970 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6055 -1.7198 -1.2952 35 1 1.7517 -0.1582 -2.1370 36 1 3.7911 1.1139 -0.4384 37 1 5.2147 0.3924 -1.2266 38 1 3.8524 0.9759 -2.2119 39 1 3.4546 -2.6515 -2.2300 40 1 3.8858 -1.2336 -3.2158 41 1 5.7019 -3.1831 -3.6194 42 1 9.9486 -4.6817 -3.9174 43 1 2.2491 -1.6318 1.1525 44 1 1.1887 -0.7494 5.2107 45 1 1.6632 0.8935 4.6673 46 1 3.2977 -1.1123 6.3190 47 1 3.0210 0.6303 6.6416 48 1 5.5911 -1.2728 5.8512 49 1 5.6994 0.3163 6.6457 50 1 6.4510 0.0651 5.0519 51 1 5.7710 0.4863 2.7171 52 1 4.5029 -0.1706 1.6547 53 1 4.1982 1.3106 2.5938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483340339.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -79.329817 kcal Electronic energy + Delta-G solvation = -31601.502762 eV Core-core repulsion = 27507.393256 eV Total energy + Delta-G solvation = -4094.109507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.55878 -40.47090 -39.38224 -38.13803 -36.09055 -35.47503 -33.70930 -33.53574 -32.46561 -31.60191 -29.59397 -27.99147 -27.55675 -26.51483 -25.86861 -24.14805 -23.12336 -21.94659 -21.34700 -21.18703 -20.46817 -20.11475 -18.11161 -17.77332 -17.17491 -17.08994 -16.76938 -16.60640 -16.17286 -15.99540 -15.72656 -15.52304 -15.44932 -15.08971 -14.87889 -14.66882 -14.31950 -14.12704 -14.08504 -13.67073 -13.52976 -13.48518 -13.25028 -13.15908 -13.02020 -12.87434 -12.72203 -12.67018 -12.64002 -12.42982 -12.34423 -12.24813 -12.10998 -11.96548 -11.88320 -11.70591 -11.64426 -11.42681 -10.67004 -10.30542 -10.18644 -9.88114 -9.42503 -9.18638 -8.38292 -5.98286 1.31214 1.37124 1.45750 1.73950 2.02999 2.25128 2.32295 2.65330 2.98510 3.18706 3.28858 3.54724 3.59047 3.81702 3.91114 4.11897 4.18481 4.24143 4.28576 4.31969 4.36613 4.43544 4.44828 4.48156 4.49512 4.51116 4.57211 4.60886 4.70917 4.73258 4.80216 4.82719 4.83953 4.85397 4.97435 4.99561 5.01829 5.10930 5.20448 5.24946 5.31981 5.33974 5.56546 5.68095 5.90853 5.92808 6.03418 6.07633 6.19670 6.64087 6.72388 6.93720 7.41721 7.45595 8.04281 8.79601 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.003009 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.681573 B = 9302.565871 C =11039.901926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.059 0.941 4 C 0.048 3.952 5 N -0.527 5.527 6 C 0.032 3.968 7 C 0.054 3.946 8 C 0.452 3.548 9 O -0.601 6.601 10 N -0.595 5.595 11 C -0.322 4.322 12 H 0.054 0.946 13 C -0.018 4.018 14 N -0.938 5.938 15 Si 0.964 3.036 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.227 1.227 19 N -0.701 5.701 20 C 0.533 3.467 21 O -0.580 6.580 22 C -0.116 4.116 23 H 0.117 0.883 24 C -0.106 4.106 25 C 0.038 3.962 26 N -0.537 5.537 27 C 0.017 3.983 28 C 0.084 3.916 29 H 0.061 0.939 30 C -0.135 4.135 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.127 0.873 40 H 0.076 0.924 41 H 0.388 0.612 42 H 0.277 0.723 43 H 0.410 0.590 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.036 0.964 49 H 0.083 0.917 50 H 0.056 0.944 51 H 0.039 0.961 52 H 0.062 0.938 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.641 2.398 8.713 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.077 0.923 4 C -0.079 4.079 5 N -0.252 5.252 6 C -0.116 4.116 7 C -0.077 4.077 8 C 0.240 3.760 9 O -0.484 6.484 10 N -0.237 5.237 11 C -0.452 4.452 12 H 0.072 0.928 13 C -0.216 4.216 14 N -0.580 5.580 15 Si 0.785 3.215 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.150 1.150 19 N -0.351 5.351 20 C 0.320 3.680 21 O -0.461 6.461 22 C -0.138 4.138 23 H 0.135 0.865 24 C -0.144 4.144 25 C -0.089 4.089 26 N -0.262 5.262 27 C -0.132 4.132 28 C -0.025 4.025 29 H 0.079 0.921 30 C -0.193 4.193 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.224 0.776 42 H 0.087 0.913 43 H 0.246 0.754 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.055 0.945 49 H 0.102 0.898 50 H 0.075 0.925 51 H 0.058 0.942 52 H 0.081 0.919 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.106 3.822 9.687 24.437 hybrid contribution 0.785 -1.160 -1.453 2.018 sum -21.321 2.662 8.234 23.011 Atomic orbital electron populations 1.22048 0.93301 1.03221 1.02384 1.20945 0.94543 0.96293 0.84086 0.92265 1.22583 0.86130 1.02736 0.96488 1.61463 1.05615 1.11297 1.46781 1.22326 1.00289 0.89553 0.99476 1.21859 0.91277 1.00003 0.94545 1.20942 0.90098 0.81378 0.83602 1.90537 1.71591 1.53947 1.32330 1.42042 1.09262 1.45894 1.26537 1.18970 0.85509 1.29007 1.11702 0.92801 1.26106 0.96205 0.97389 1.01870 1.69819 1.09942 1.38549 1.39647 0.85372 0.80130 0.78344 0.77704 1.18524 1.20341 1.15036 1.45885 1.66027 1.14506 1.08680 1.20371 0.75825 0.86732 0.85103 1.90646 1.52275 1.17444 1.85688 1.22289 0.95386 1.01957 0.94203 0.86486 1.22474 0.97792 1.02089 0.92047 1.23292 0.89003 1.00773 0.95860 1.64668 1.03353 1.54829 1.03337 1.22530 0.91753 0.98966 0.99926 1.22156 0.93640 0.95698 0.91001 0.92083 1.21787 1.00053 1.00034 0.97407 0.93734 0.90267 0.90558 0.87479 0.91681 0.92327 0.92990 0.95008 0.85553 0.90606 0.77621 0.91326 0.75417 0.88193 0.91263 0.91965 0.89048 0.94510 0.89820 0.92475 0.94219 0.91939 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.48 71.98 0.68 -1.59 16 2 C 0.15 2.88 2.35 45.00 0.11 2.98 16 3 H 0.06 1.53 6.23 -2.39 -0.01 1.51 16 4 C 0.05 0.83 4.52 86.30 0.39 1.22 16 5 N -0.53 -13.85 4.22 -927.04 -3.92 -17.77 16 6 C 0.03 0.98 8.96 127.69 1.14 2.12 16 7 C 0.05 1.47 5.45 85.56 0.47 1.94 16 8 C 0.45 19.18 7.47 87.66 0.66 19.83 16 9 O -0.60 -31.55 13.91 -3.05 -0.04 -31.59 16 10 N -0.59 -26.86 5.09 -306.98 -1.56 -28.43 16 11 C -0.32 -18.50 10.16 84.04 0.85 -17.65 16 12 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 13 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 14 N -0.94 -56.34 13.96 21.67 0.30 -56.04 16 15 Si 0.96 37.98 27.74 68.60 1.90 39.88 16 16 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 17 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.23 -7.33 6.52 99.48 0.65 -6.69 16 19 N -0.70 -14.76 4.48 -442.53 -1.98 -16.74 16 20 C 0.53 13.49 4.72 87.66 0.41 13.90 16 21 O -0.58 -19.01 14.52 -3.05 -0.04 -19.06 16 22 C -0.12 -2.47 3.37 -10.66 -0.04 -2.51 16 23 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 24 C -0.11 -2.00 6.56 31.80 0.21 -1.80 16 25 C 0.04 0.68 6.56 86.65 0.57 1.25 16 26 N -0.54 -12.88 5.18 -884.07 -4.58 -17.47 16 27 C 0.02 0.34 9.41 127.69 1.20 1.55 16 28 C 0.08 2.15 3.09 45.06 0.14 2.29 16 29 H 0.06 1.54 7.70 -2.39 -0.02 1.53 16 30 C -0.13 -4.34 8.37 71.98 0.60 -3.73 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 1.32 7.93 -2.39 -0.02 1.30 16 35 H 0.07 0.95 8.12 -2.38 -0.02 0.93 16 36 H 0.06 1.83 6.58 -2.39 -0.02 1.81 16 37 H 0.05 2.08 5.82 -2.39 -0.01 2.06 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.13 2.57 7.93 -2.39 -0.02 2.56 16 40 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 41 H 0.39 14.39 5.76 -92.71 -0.53 13.85 16 42 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.41 7.55 8.60 -92.70 -0.80 6.75 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.69 6.94 -2.38 -0.02 1.67 16 46 H 0.06 0.92 8.00 -2.38 -0.02 0.90 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.04 0.69 7.99 -2.39 -0.02 0.67 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 51 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.06 2.18 7.28 -2.39 -0.02 2.16 16 53 H 0.05 1.72 6.85 -2.38 -0.02 1.71 16 Total: -1.00 -80.02 412.75 -2.55 -82.57 By element: Atomic # 1 Polarization: 45.80 SS G_CDS: -0.48 Total: 45.32 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.86 Total: 19.32 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -11.74 Total: -136.44 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.09 Total: -50.64 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.90 Total: 39.88 kcal Total: -80.02 -2.55 -82.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483340339.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.239 kcal (2) G-P(sol) polarization free energy of solvation -80.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds