Wall clock time and date at job start Sat Apr 11 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46948 * 2 1 4 4 C 1.52998 * 109.47140 * 120.00238 * 2 1 3 5 5 N 1.46501 * 109.46816 * 176.64570 * 4 2 1 6 6 C 1.34778 * 119.99632 * 185.05074 * 5 4 2 7 7 O 1.21283 * 120.00416 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99672 * 180.02562 * 6 5 4 9 9 N 1.46905 * 109.46999 * 180.02562 * 8 6 5 10 10 C 1.47444 * 110.99938 * 69.87157 * 9 8 6 11 11 C 1.54325 * 107.22876 * 123.26037 * 10 9 8 12 12 C 1.55136 * 103.01908 * 22.28177 * 11 10 9 13 13 H 1.09003 * 110.99112 * 82.48248 * 12 11 10 14 14 C 1.53003 * 110.98708 * 206.25513 * 12 11 10 15 15 C 1.47842 * 110.99923 * 190.71904 * 9 8 6 16 16 N 1.46903 * 109.46634 * 240.00184 * 2 1 3 17 17 C 1.46896 * 111.00099 * 72.22923 * 16 2 1 18 18 C 1.46892 * 111.00256 * 308.27006 * 16 2 1 19 19 C 1.50700 * 109.47424 * 190.00450 * 18 16 2 20 20 O 1.21298 * 119.99858 * 359.97438 * 19 18 16 21 21 N 1.34782 * 120.00500 * 180.02562 * 19 18 16 22 22 C 1.37092 * 119.99787 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00631 * 359.97438 * 22 21 19 24 24 C 1.38959 * 119.99754 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99966 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99641 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46644 * 90.00302 * 26 24 22 28 28 H 1.48496 * 109.46749 * 209.99636 * 26 24 22 29 29 H 1.48498 * 109.47223 * 330.00291 * 26 24 22 30 30 H 1.08992 * 109.47212 * 299.99592 * 1 2 3 31 31 H 1.08999 * 109.47102 * 60.00001 * 1 2 3 32 32 H 1.09003 * 109.46744 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46953 * 296.64644 * 4 2 1 34 34 H 1.09000 * 109.47164 * 56.64730 * 4 2 1 35 35 H 0.96999 * 119.99964 * 5.05840 * 5 4 2 36 36 H 1.09000 * 109.46998 * 299.99924 * 8 6 5 37 37 H 1.08998 * 109.47272 * 60.00212 * 8 6 5 38 38 H 1.08998 * 109.88856 * 242.65944 * 10 9 8 39 39 H 1.09001 * 109.89102 * 3.85368 * 10 9 8 40 40 H 1.08994 * 110.70270 * 140.66839 * 11 10 9 41 41 H 1.09003 * 110.70232 * 263.72133 * 11 10 9 42 42 H 1.08993 * 109.47165 * 58.55106 * 14 12 11 43 43 H 1.09000 * 109.47082 * 178.54939 * 14 12 11 44 44 H 1.08996 * 109.46961 * 298.54369 * 14 12 11 45 45 H 1.09003 * 110.37524 * 332.45930 * 15 9 8 46 46 H 1.08997 * 110.37909 * 94.80381 * 15 9 8 47 47 H 1.09001 * 109.47576 * 53.71820 * 17 16 2 48 48 H 1.09005 * 109.47219 * 173.72162 * 17 16 2 49 49 H 1.08999 * 109.47006 * 293.71619 * 17 16 2 50 50 H 1.09004 * 109.47515 * 310.00393 * 18 16 2 51 51 H 1.08997 * 109.47550 * 70.00418 * 18 16 2 52 52 H 0.96995 * 119.99495 * 359.97438 * 21 19 18 53 53 H 0.97003 * 119.99846 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5028 -0.7916 1.2094 6 6 4.1706 -1.4755 2.1596 7 8 3.5606 -2.0330 3.0473 8 6 5.6754 -1.5474 2.1190 9 7 6.1584 -2.3445 3.2545 10 6 5.8149 -3.7683 3.0846 11 6 7.1333 -4.5677 3.1510 12 6 8.0828 -3.6124 3.9208 13 1 7.9303 -3.6939 4.9970 14 6 9.5441 -3.8806 3.5555 15 6 7.6252 -2.2279 3.3979 16 7 2.0196 -0.6925 -1.1995 17 6 1.8004 0.1206 -2.4031 18 6 1.3943 -2.0146 -1.3363 19 6 2.0912 -2.7899 -2.4244 20 8 3.0176 -2.2900 -3.0272 21 7 1.6847 -4.0384 -2.7287 22 6 2.3185 -4.7434 -3.7190 23 1 3.1433 -4.2983 -4.2557 24 6 1.8997 -6.0308 -4.0323 25 7 2.5068 -6.7064 -4.9819 26 14 0.4735 -6.8009 -3.1036 27 1 -0.7993 -6.4845 -3.8002 28 1 0.6555 -8.2737 -3.0500 29 1 0.4306 -6.2568 -1.7226 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7266 -0.1740 2.1381 34 1 1.6285 -1.7301 1.2797 35 1 3.9907 -0.3460 0.4993 36 1 5.9918 -2.0149 1.1866 37 1 6.0890 -0.5407 2.1793 38 1 5.1475 -4.0868 3.8853 39 1 5.3366 -3.9216 2.1172 40 1 6.9927 -5.4977 3.7017 41 1 7.5131 -4.7683 2.1492 42 1 9.6798 -3.7517 2.4817 43 1 10.1865 -3.1804 4.0894 44 1 9.8072 -4.9007 3.8351 45 1 8.0852 -2.0159 2.4327 46 1 7.8754 -1.4487 4.1178 47 1 2.2381 1.1084 -2.2590 48 1 2.2703 -0.3636 -3.2593 49 1 0.7302 0.2203 -2.5843 50 1 1.4784 -2.5557 -0.3937 51 1 0.3419 -1.8940 -1.5931 52 1 0.9437 -4.4380 -2.2470 53 1 2.2142 -7.6050 -5.2009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485349039.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:03 Heat of formation + Delta-G solvation = -80.646327 kcal Electronic energy + Delta-G solvation = -30878.181873 eV Core-core repulsion = 26784.015278 eV Total energy + Delta-G solvation = -4094.166595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.14058 -40.61152 -39.56276 -38.64388 -36.03421 -35.22501 -34.29345 -33.75822 -32.10787 -30.76571 -29.72901 -28.97515 -27.18838 -26.61658 -25.65789 -24.88061 -22.27090 -21.78919 -21.39690 -21.06955 -20.75677 -19.88216 -18.19238 -17.79095 -17.42676 -17.33618 -16.94347 -16.65304 -16.21712 -15.99545 -15.80262 -15.62370 -15.22641 -14.94461 -14.86910 -14.60629 -14.39491 -14.25503 -14.04202 -13.91212 -13.88974 -13.62203 -13.51742 -13.19494 -13.08244 -13.03325 -12.86565 -12.83993 -12.46231 -12.44650 -12.18547 -12.14737 -12.01757 -11.89769 -11.74044 -11.60439 -11.53734 -11.47346 -10.79201 -10.36882 -10.23956 -9.94474 -9.32213 -9.18613 -8.42921 -6.02504 1.27538 1.31160 1.40055 1.72584 1.94995 2.17668 2.19801 2.62312 3.05868 3.13502 3.23473 3.62690 3.66934 3.77285 3.92684 3.94819 4.02482 4.16261 4.27610 4.29232 4.31298 4.35082 4.36899 4.38011 4.48607 4.58379 4.59372 4.65784 4.67575 4.69704 4.80943 4.83349 4.85228 4.90668 4.97244 5.03010 5.07001 5.18327 5.25287 5.27932 5.28997 5.43897 5.51211 5.56346 5.88243 5.89396 5.99116 6.00787 6.20438 6.58511 6.68820 6.87782 7.36800 7.39178 7.95970 8.74576 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007886 B = 0.003347 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.587485 B = 8363.976520 C =10711.750191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 H 0.112 0.888 4 C 0.131 3.869 5 N -0.710 5.710 6 C 0.508 3.492 7 O -0.571 6.571 8 C 0.033 3.967 9 N -0.527 5.527 10 C 0.053 3.947 11 C -0.139 4.139 12 C -0.096 4.096 13 H 0.085 0.915 14 C -0.138 4.138 15 C 0.045 3.955 16 N -0.525 5.525 17 C 0.026 3.974 18 C 0.053 3.947 19 C 0.454 3.546 20 O -0.599 6.599 21 N -0.596 5.596 22 C -0.323 4.323 23 H 0.059 0.941 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.958 3.042 27 H -0.255 1.255 28 H -0.275 1.275 29 H -0.239 1.239 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.413 0.587 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.033 0.967 50 H 0.099 0.901 51 H 0.079 0.921 52 H 0.386 0.614 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 13.334 18.704 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.034 4.034 3 H 0.130 0.870 4 C 0.006 3.994 5 N -0.362 5.362 6 C 0.295 3.705 7 O -0.450 6.450 8 C -0.098 4.098 9 N -0.251 5.251 10 C -0.075 4.075 11 C -0.178 4.178 12 C -0.115 4.115 13 H 0.104 0.896 14 C -0.195 4.195 15 C -0.082 4.082 16 N -0.249 5.249 17 C -0.122 4.122 18 C -0.078 4.078 19 C 0.242 3.758 20 O -0.482 6.482 21 N -0.238 5.238 22 C -0.453 4.453 23 H 0.077 0.923 24 C -0.211 4.211 25 N -0.574 5.574 26 Si 0.778 3.222 27 H -0.179 1.179 28 H -0.200 1.200 29 H -0.162 1.162 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.052 0.948 50 H 0.117 0.883 51 H 0.096 0.904 52 H 0.221 0.779 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.971 13.247 19.284 23.583 hybrid contribution -1.020 -1.107 -1.422 2.071 sum 1.951 12.140 17.862 21.685 Atomic orbital electron populations 1.22384 0.95008 1.02941 1.03845 1.22093 0.94634 0.98675 0.88012 0.86981 1.21419 0.80005 1.00343 0.97608 1.45778 1.07668 1.53914 1.28828 1.20867 0.90656 0.77884 0.81135 1.90658 1.70581 1.46648 1.37107 1.22196 0.91784 1.01932 0.93921 1.63287 1.13691 1.08313 1.39847 1.22658 0.97453 0.87642 0.99731 1.22903 0.94679 0.99220 1.00959 1.22267 0.95439 0.93426 1.00325 0.89623 1.21691 0.93936 1.02366 1.01525 1.23245 0.85330 0.98636 1.00997 1.61702 1.58053 1.01433 1.03707 1.22441 0.99394 0.97783 0.92582 1.21811 0.96899 0.91643 0.97423 1.20837 0.86074 0.82183 0.86753 1.90503 1.32332 1.69626 1.55772 1.42091 1.32696 1.14586 1.34443 1.18989 1.15472 0.97824 1.12975 0.92296 1.26014 1.01350 0.96162 0.97591 1.69789 1.43057 1.12851 1.31697 0.85463 0.78367 0.78574 0.79773 1.17935 1.19984 1.16226 0.89803 0.91407 0.92376 0.90205 0.93242 0.75044 0.91651 0.85382 0.91788 0.95109 0.90072 0.91618 0.92857 0.91127 0.91920 0.92579 0.88901 0.89550 0.92909 0.94844 0.88257 0.90374 0.77929 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.42 71.98 0.61 -2.13 16 2 C 0.07 1.34 2.42 44.92 0.11 1.45 16 3 H 0.11 1.61 7.94 -2.39 -0.02 1.59 16 4 C 0.13 2.76 4.95 86.38 0.43 3.19 16 5 N -0.71 -16.31 5.37 -463.06 -2.49 -18.80 16 6 C 0.51 13.88 7.48 87.66 0.66 14.54 16 7 O -0.57 -19.91 15.54 -3.04 -0.05 -19.95 16 8 C 0.03 0.74 5.03 85.56 0.43 1.17 16 9 N -0.53 -12.64 4.85 -890.08 -4.32 -16.96 16 10 C 0.05 1.40 5.65 86.65 0.49 1.89 16 11 C -0.14 -2.86 6.41 31.78 0.20 -2.65 16 12 C -0.10 -1.59 3.63 -9.41 -0.03 -1.62 16 13 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 14 C -0.14 -1.79 9.30 71.98 0.67 -1.12 16 15 C 0.04 0.79 6.15 86.77 0.53 1.33 16 16 N -0.52 -13.80 4.03 -901.63 -3.63 -17.43 16 17 C 0.03 0.68 8.90 127.69 1.14 1.81 16 18 C 0.05 1.64 4.32 85.56 0.37 2.01 16 19 C 0.45 20.23 7.52 87.66 0.66 20.89 16 20 O -0.60 -31.74 13.88 -3.09 -0.04 -31.78 16 21 N -0.60 -28.42 5.09 -306.97 -1.56 -29.98 16 22 C -0.32 -18.93 10.16 84.04 0.85 -18.08 16 23 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 25 N -0.93 -56.38 13.96 21.67 0.30 -56.08 16 26 Si 0.96 39.68 27.74 68.60 1.90 41.58 16 27 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 29 H -0.24 -8.62 6.52 99.48 0.65 -7.97 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.99 6.91 -2.39 -0.02 0.98 16 32 H 0.06 0.96 6.54 -2.39 -0.02 0.94 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.25 6.58 -2.39 -0.02 1.23 16 35 H 0.41 8.56 8.29 -92.71 -0.77 7.79 16 36 H 0.07 1.51 7.96 -2.39 -0.02 1.49 16 37 H 0.13 2.09 8.07 -2.39 -0.02 2.07 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.03 0.93 7.31 -2.39 -0.02 0.91 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.38 8.04 -2.39 -0.02 1.37 16 42 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.92 7.67 -2.39 -0.02 0.90 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.79 7.98 -2.39 -0.02 1.77 16 48 H 0.05 1.90 5.92 -2.38 -0.01 1.89 16 49 H 0.03 0.77 6.95 -2.39 -0.02 0.76 16 50 H 0.10 2.90 6.26 -2.39 -0.01 2.88 16 51 H 0.08 2.04 6.81 -2.39 -0.02 2.02 16 52 H 0.39 15.67 5.76 -92.71 -0.53 15.13 16 53 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -78.80 410.97 -2.75 -81.55 By element: Atomic # 1 Polarization: 45.85 SS G_CDS: -0.45 Total: 45.41 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.58 Total: 22.43 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -11.70 Total: -139.24 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.09 Total: -51.73 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.90 Total: 41.58 kcal Total: -78.80 -2.75 -81.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485349039.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.906 kcal (2) G-P(sol) polarization free energy of solvation -78.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds