Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47341 * 2 1 4 4 C 1.52997 * 109.47156 * 239.99585 * 2 1 3 5 5 N 1.46505 * 109.47448 * 184.24801 * 4 2 1 6 6 C 1.34773 * 120.00353 * 174.73098 * 5 4 2 7 7 O 1.21287 * 119.99935 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.46895 * 109.46972 * 179.97438 * 8 6 5 10 10 C 1.48562 * 111.00201 * 290.12671 * 9 8 6 11 11 C 1.54383 * 104.59407 * 200.96067 * 10 9 8 12 12 C 1.54257 * 105.06215 * 23.85537 * 11 10 9 13 13 H 1.08997 * 110.32563 * 241.00313 * 12 11 10 14 14 C 1.52992 * 110.32631 * 118.89200 * 12 11 10 15 15 C 1.48558 * 110.99804 * 174.70816 * 9 8 6 16 16 N 1.46899 * 109.46899 * 119.99815 * 2 1 3 17 17 C 1.46903 * 111.00278 * 290.95693 * 16 2 1 18 18 C 1.46903 * 111.00204 * 54.90978 * 16 2 1 19 19 C 1.50702 * 109.47429 * 169.99823 * 18 16 2 20 20 O 1.21286 * 119.99948 * 0.02562 * 19 18 16 21 21 N 1.34777 * 119.99900 * 179.97438 * 19 18 16 22 22 C 1.37095 * 119.99691 * 180.02562 * 21 19 18 23 23 H 1.07994 * 120.00531 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99929 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99700 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00010 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47160 * 89.99880 * 26 24 22 28 28 H 1.48497 * 109.47062 * 209.99836 * 26 24 22 29 29 H 1.48500 * 109.47343 * 329.99745 * 26 24 22 30 30 H 1.09010 * 109.47148 * 59.99761 * 1 2 3 31 31 H 1.08997 * 109.47823 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47471 * 300.00345 * 1 2 3 33 33 H 1.09001 * 109.47116 * 64.24590 * 4 2 1 34 34 H 1.09003 * 109.47519 * 304.24613 * 4 2 1 35 35 H 0.96999 * 119.99345 * 354.73036 * 5 4 2 36 36 H 1.08995 * 109.46693 * 59.99856 * 8 6 5 37 37 H 1.08996 * 109.46862 * 299.99781 * 8 6 5 38 38 H 1.08997 * 110.41113 * 82.18644 * 10 9 8 39 39 H 1.08996 * 110.41044 * 319.74157 * 10 9 8 40 40 H 1.08998 * 110.32556 * 264.95484 * 11 10 9 41 41 H 1.09004 * 110.32128 * 142.75221 * 11 10 9 42 42 H 1.09002 * 109.47112 * 61.45752 * 14 12 11 43 43 H 1.08995 * 109.47401 * 301.45612 * 14 12 11 44 44 H 1.09004 * 109.47344 * 181.44985 * 14 12 11 45 45 H 1.09003 * 110.41246 * 40.26333 * 15 9 8 46 46 H 1.08997 * 110.41351 * 277.81675 * 15 9 8 47 47 H 1.08996 * 109.46884 * 66.45836 * 17 16 2 48 48 H 1.08999 * 109.46932 * 186.45994 * 17 16 2 49 49 H 1.09001 * 109.46652 * 306.46260 * 17 16 2 50 50 H 1.09001 * 109.47182 * 290.00207 * 18 16 2 51 51 H 1.09011 * 109.46911 * 49.99557 * 18 16 2 52 52 H 0.97002 * 120.00078 * 0.02562 * 21 19 18 53 53 H 0.97000 * 119.99439 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5014 -0.8106 -1.1992 6 6 4.1672 -1.5017 -2.1455 7 8 3.5564 -2.0494 -3.0388 8 6 5.6705 -1.5930 -2.0943 9 7 6.1512 -2.3948 -3.2274 10 6 5.7855 -3.8250 -3.0608 11 6 6.7708 -4.5872 -3.9727 12 6 7.9880 -3.6510 -4.1188 13 1 8.1338 -3.3799 -5.1644 14 6 9.2455 -4.3237 -3.5649 15 6 7.6357 -2.4017 -3.2829 16 7 2.0196 -0.6925 1.1995 17 6 1.7326 0.0868 2.4113 18 6 1.4517 -2.0439 1.2959 19 6 2.1551 -2.8076 2.3882 20 8 3.0418 -2.2781 3.0241 21 7 1.7980 -4.0787 2.6590 22 6 2.4375 -4.7733 3.6531 23 1 3.2276 -4.3021 4.2188 24 6 2.0698 -6.0839 3.9320 25 7 1.1087 -6.6574 3.2433 26 14 2.9417 -7.0306 5.2860 27 1 2.2319 -6.8198 6.5733 28 1 2.9458 -8.4780 4.9542 29 1 4.3403 -6.5464 5.4068 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.7401 -0.1655 -2.1376 34 1 1.6158 -1.7247 -1.2880 35 1 3.9898 -0.3722 -0.4849 36 1 5.9741 -2.0658 -1.1604 37 1 6.0974 -0.5917 -2.1503 38 1 4.7587 -3.9951 -3.3846 39 1 5.9135 -4.1316 -2.0227 40 1 6.3180 -4.7744 -4.9464 41 1 7.0692 -5.5262 -3.5064 42 1 9.4519 -5.2313 -4.1322 43 1 9.0897 -4.5781 -2.5166 44 1 10.0909 -3.6411 -3.6514 45 1 8.0533 -2.4856 -2.2795 46 1 8.0020 -1.5001 -3.7739 47 1 0.6548 0.1319 2.5674 48 1 2.2045 -0.3903 3.2702 49 1 2.1255 1.0968 2.2952 50 1 0.3886 -1.9757 1.5268 51 1 1.5847 -2.5625 0.3463 52 1 1.0886 -4.5020 2.1507 53 1 0.8518 -7.5722 3.4383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485349041.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -85.066690 kcal Electronic energy + Delta-G solvation = -30857.216159 eV Core-core repulsion = 26762.857883 eV Total energy + Delta-G solvation = -4094.358276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.12401 -40.51763 -39.53317 -38.60546 -35.98966 -35.22061 -34.37040 -33.28092 -32.09516 -30.69471 -29.60873 -28.92871 -27.21269 -26.66620 -25.67470 -24.92255 -22.45475 -21.86744 -21.34059 -20.82636 -20.43045 -19.71744 -18.22589 -17.88275 -17.37241 -17.10029 -16.85999 -16.53698 -16.27351 -16.06598 -15.86631 -15.61331 -15.45308 -15.07468 -14.94488 -14.62139 -14.36247 -13.99228 -13.92543 -13.85212 -13.63941 -13.48156 -13.30316 -13.15546 -13.06985 -13.00734 -12.83431 -12.77308 -12.46455 -12.41521 -12.32541 -12.18061 -12.13966 -11.79685 -11.74387 -11.60891 -11.45259 -11.41376 -10.78740 -10.27879 -10.00761 -9.96427 -9.49853 -9.18132 -8.47004 -5.95753 1.36414 1.39829 1.52597 1.70903 2.05244 2.16152 2.27554 2.77506 3.08818 3.19793 3.39802 3.64111 3.70639 3.76715 3.95153 4.00841 4.07073 4.21453 4.25972 4.29063 4.31617 4.34644 4.36646 4.48845 4.52310 4.58992 4.63068 4.65444 4.67891 4.69473 4.78230 4.80113 4.84880 4.89466 4.97369 5.01729 5.12395 5.20079 5.24994 5.27797 5.28373 5.40104 5.41374 5.54913 5.79794 5.87538 5.90906 6.06477 6.21932 6.59580 6.67673 7.12482 7.35654 7.56087 8.11372 8.70632 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007247 B = 0.003422 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3863.003157 B = 8180.258609 C =11080.734369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 H 0.115 0.885 4 C 0.130 3.870 5 N -0.708 5.708 6 C 0.509 3.491 7 O -0.572 6.572 8 C 0.027 3.973 9 N -0.507 5.507 10 C 0.032 3.968 11 C -0.119 4.119 12 C -0.092 4.092 13 H 0.087 0.913 14 C -0.141 4.141 15 C 0.034 3.966 16 N -0.521 5.521 17 C 0.026 3.974 18 C 0.058 3.942 19 C 0.444 3.556 20 O -0.608 6.608 21 N -0.578 5.578 22 C -0.330 4.330 23 H 0.081 0.919 24 C -0.015 4.015 25 N -0.923 5.923 26 Si 0.992 3.008 27 H -0.270 1.270 28 H -0.273 1.273 29 H -0.272 1.272 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.414 0.586 36 H 0.067 0.933 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.096 0.904 47 H 0.029 0.971 48 H 0.055 0.945 49 H 0.087 0.913 50 H 0.066 0.934 51 H 0.090 0.910 52 H 0.393 0.607 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.528 12.347 -12.962 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.035 4.035 3 H 0.133 0.867 4 C 0.006 3.994 5 N -0.361 5.361 6 C 0.295 3.705 7 O -0.451 6.451 8 C -0.105 4.105 9 N -0.231 5.231 10 C -0.096 4.096 11 C -0.157 4.157 12 C -0.111 4.111 13 H 0.105 0.895 14 C -0.198 4.198 15 C -0.093 4.093 16 N -0.245 5.245 17 C -0.121 4.121 18 C -0.073 4.073 19 C 0.231 3.769 20 O -0.494 6.494 21 N -0.215 5.215 22 C -0.460 4.460 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.564 5.564 26 Si 0.815 3.185 27 H -0.195 1.195 28 H -0.198 1.198 29 H -0.196 1.196 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.048 0.952 48 H 0.074 0.926 49 H 0.106 0.894 50 H 0.084 0.916 51 H 0.108 0.892 52 H 0.226 0.774 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.865 12.335 -13.666 20.019 hybrid contribution -0.764 -1.175 1.744 2.237 sum 7.101 11.159 -11.922 17.807 Atomic orbital electron populations 1.22378 0.95317 1.02629 1.03852 1.22099 0.94429 0.98811 0.88117 0.86731 1.21415 0.80130 1.00178 0.97683 1.45762 1.07697 1.53841 1.28759 1.20851 0.90630 0.77816 0.81182 1.90655 1.70533 1.47160 1.36776 1.22186 0.91821 1.02231 0.94226 1.65174 1.10465 1.08370 1.39058 1.23101 1.00269 0.88380 0.97893 1.22400 0.95221 0.98304 0.99747 1.21874 0.94733 0.94036 1.00493 0.89504 1.21840 0.96542 1.00889 1.00548 1.23347 0.86392 0.99870 0.99711 1.61752 1.58756 1.00582 1.03388 1.22440 0.98833 0.98299 0.92568 1.21707 0.96822 0.91287 0.97510 1.20718 0.86296 0.82557 0.87286 1.90445 1.34900 1.69267 1.54789 1.41972 1.34679 1.11755 1.33131 1.19655 1.17636 0.95773 1.12887 0.90104 1.26045 0.97340 0.97294 1.00721 1.69688 1.29863 1.15070 1.41809 0.84944 0.78412 0.77273 0.77831 1.19526 1.19766 1.19627 0.89732 0.92958 0.91352 0.90134 0.93546 0.74955 0.91511 0.85115 0.91713 0.95262 0.91113 0.90647 0.91723 0.93368 0.91260 0.93119 0.88529 0.95242 0.92627 0.89414 0.91615 0.89168 0.77429 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.46 71.98 0.61 -2.65 16 2 C 0.07 1.50 2.45 44.91 0.11 1.61 16 3 H 0.11 1.83 8.00 -2.39 -0.02 1.81 16 4 C 0.13 3.05 4.86 86.38 0.42 3.47 16 5 N -0.71 -17.44 5.36 -463.05 -2.48 -19.92 16 6 C 0.51 14.63 7.63 87.66 0.67 15.30 16 7 O -0.57 -20.88 14.84 -3.05 -0.05 -20.93 16 8 C 0.03 0.62 5.30 85.56 0.45 1.08 16 9 N -0.51 -12.63 5.06 -886.06 -4.48 -17.12 16 10 C 0.03 0.87 5.80 86.45 0.50 1.37 16 11 C -0.12 -2.53 6.65 31.49 0.21 -2.32 16 12 C -0.09 -1.59 3.65 -9.90 -0.04 -1.62 16 13 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 14 C -0.14 -1.97 8.91 71.98 0.64 -1.33 16 15 C 0.03 0.63 6.03 86.45 0.52 1.15 16 16 N -0.52 -14.81 4.01 -901.61 -3.62 -18.43 16 17 C 0.03 0.73 8.84 127.69 1.13 1.86 16 18 C 0.06 2.00 4.42 85.56 0.38 2.38 16 19 C 0.44 20.91 7.52 87.66 0.66 21.56 16 20 O -0.61 -32.24 13.88 -3.05 -0.04 -32.28 16 21 N -0.58 -30.03 5.29 -306.99 -1.62 -31.65 16 22 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 23 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.92 -50.73 13.05 21.67 0.28 -50.45 16 26 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 1.07 6.56 -2.39 -0.02 1.06 16 32 H 0.07 1.18 6.79 -2.38 -0.02 1.17 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.32 6.52 -2.39 -0.02 1.30 16 35 H 0.41 9.15 8.26 -92.71 -0.77 8.38 16 36 H 0.07 1.59 7.88 -2.39 -0.02 1.57 16 37 H 0.13 2.22 8.13 -2.39 -0.02 2.20 16 38 H 0.06 2.16 6.91 -2.39 -0.02 2.14 16 39 H 0.03 0.86 7.82 -2.39 -0.02 0.84 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.50 7.71 -2.38 -0.02 1.48 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.05 0.90 7.70 -2.39 -0.02 0.88 16 46 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.03 0.75 6.85 -2.39 -0.02 0.73 16 48 H 0.05 2.05 5.93 -2.39 -0.01 2.04 16 49 H 0.09 1.91 8.02 -2.39 -0.02 1.89 16 50 H 0.07 2.08 6.81 -2.39 -0.02 2.07 16 51 H 0.09 3.10 6.12 -2.38 -0.01 3.08 16 52 H 0.39 19.82 7.90 -92.71 -0.73 19.08 16 53 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -71.85 412.57 -3.02 -74.87 By element: Atomic # 1 Polarization: 47.71 SS G_CDS: -0.58 Total: 47.12 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 7.55 Total: 23.56 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -11.92 Total: -137.57 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.09 Total: -53.21 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.85 -3.02 -74.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485349041.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.202 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds