Wall clock time and date at job start Sat Apr 11 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47079 * 2 1 4 4 C 1.52999 * 109.47108 * 120.00116 * 2 1 3 5 5 N 1.46496 * 109.47261 * 65.67303 * 4 2 1 6 6 C 1.34783 * 120.00285 * 176.23257 * 5 4 2 7 7 O 1.21281 * 119.99252 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00127 * 180.02562 * 6 5 4 9 9 N 1.46903 * 109.46800 * 180.02562 * 8 6 5 10 10 C 1.48563 * 110.99929 * 290.12581 * 9 8 6 11 11 C 1.54384 * 104.59378 * 200.96443 * 10 9 8 12 12 C 1.54261 * 105.05992 * 23.84897 * 11 10 9 13 13 H 1.08999 * 110.32160 * 241.00463 * 12 11 10 14 14 C 1.53004 * 110.32277 * 118.90000 * 12 11 10 15 15 C 1.48561 * 110.99689 * 174.70960 * 9 8 6 16 16 N 1.46907 * 109.47160 * 240.00166 * 2 1 3 17 17 C 1.46903 * 110.99999 * 184.09791 * 16 2 1 18 18 C 1.46895 * 110.99777 * 60.13940 * 16 2 1 19 19 C 1.50704 * 109.46778 * 189.99909 * 18 16 2 20 20 O 1.21289 * 119.99791 * 0.02562 * 19 18 16 21 21 N 1.34777 * 119.99898 * 179.97438 * 19 18 16 22 22 C 1.37096 * 119.99923 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00048 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00193 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99574 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00253 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47237 * 90.00593 * 26 24 22 28 28 H 1.48503 * 109.47380 * 210.00557 * 26 24 22 29 29 H 1.48504 * 109.47123 * 330.00358 * 26 24 22 30 30 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46990 * 299.99902 * 1 2 3 32 32 H 1.09002 * 109.47019 * 59.99729 * 1 2 3 33 33 H 1.08994 * 109.47028 * 305.66972 * 4 2 1 34 34 H 1.09002 * 109.46966 * 185.67705 * 4 2 1 35 35 H 0.96997 * 120.00221 * 356.24106 * 5 4 2 36 36 H 1.08999 * 109.47059 * 60.00254 * 8 6 5 37 37 H 1.09000 * 109.46912 * 299.99676 * 8 6 5 38 38 H 1.08995 * 110.41627 * 82.18352 * 10 9 8 39 39 H 1.09002 * 110.40884 * 319.73700 * 10 9 8 40 40 H 1.09001 * 110.32072 * 264.95898 * 11 10 9 41 41 H 1.08992 * 110.32454 * 142.74943 * 11 10 9 42 42 H 1.08996 * 109.46859 * 61.45360 * 14 12 11 43 43 H 1.09007 * 109.46895 * 301.45068 * 14 12 11 44 44 H 1.09000 * 109.47094 * 181.45455 * 14 12 11 45 45 H 1.09001 * 110.41346 * 40.25829 * 15 9 8 46 46 H 1.08999 * 110.40611 * 277.81721 * 15 9 8 47 47 H 1.09001 * 109.47169 * 66.53296 * 17 16 2 48 48 H 1.08989 * 109.46738 * 186.54030 * 17 16 2 49 49 H 1.09004 * 109.46414 * 306.53618 * 17 16 2 50 50 H 1.09000 * 109.47509 * 309.99688 * 18 16 2 51 51 H 1.09002 * 109.47132 * 70.00377 * 18 16 2 52 52 H 0.97005 * 120.00154 * 0.02562 * 21 19 18 53 53 H 0.96998 * 119.99826 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6664 -2.1362 1.1829 6 6 2.0772 -2.9875 2.1437 7 8 2.7558 -2.5819 3.0634 8 6 1.6933 -4.4432 2.0752 9 7 2.2592 -5.1537 3.2297 10 6 3.7372 -5.2562 3.1195 11 6 4.1156 -6.4328 4.0446 12 6 2.8392 -7.2939 4.1403 13 1 2.4962 -7.3488 5.1734 14 6 3.1034 -8.6983 3.5937 15 6 1.7971 -6.5651 3.2649 16 7 2.0197 -0.6925 -1.1995 17 6 3.4849 -0.7975 -1.1855 18 6 1.5514 -0.0244 -2.4211 19 6 1.8604 -0.8888 -3.6163 20 8 2.4156 -1.9565 -3.4652 21 7 1.5188 -0.4758 -4.8529 22 6 1.8004 -1.2619 -5.9402 23 1 2.2955 -2.2123 -5.8058 24 6 1.4478 -0.8365 -7.2152 25 7 0.8449 0.3197 -7.3786 26 14 1.8308 -1.9079 -8.6966 27 1 0.6888 -2.8212 -8.9555 28 1 2.0553 -1.0468 -9.8855 29 1 3.0528 -2.7073 -8.4267 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.5961 -0.2694 2.1362 34 1 3.1253 -0.6341 1.3015 35 1 1.1234 -2.4605 0.4475 36 1 2.0815 -4.8783 1.1543 37 1 0.6071 -4.5335 2.0901 38 1 4.2088 -4.3356 3.4632 39 1 4.0277 -5.4723 2.0914 40 1 4.3979 -6.0636 5.0305 41 1 4.9302 -7.0106 3.6082 42 1 3.8776 -9.1806 4.1903 43 1 3.4339 -8.6286 2.5573 44 1 2.1869 -9.2861 3.6440 45 1 1.7840 -6.9861 2.2596 46 1 0.8079 -6.6300 3.7181 47 1 3.7944 -1.4537 -0.3719 48 1 3.8287 -1.2085 -2.1346 49 1 3.9186 0.1918 -1.0394 50 1 0.4752 0.1364 -2.3575 51 1 2.0567 0.9356 -2.5266 52 1 1.0744 0.3779 -4.9737 53 1 0.5991 0.6169 -8.2686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485349042.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:12 Heat of formation + Delta-G solvation = -82.498987 kcal Electronic energy + Delta-G solvation = -30305.322726 eV Core-core repulsion = 26211.075794 eV Total energy + Delta-G solvation = -4094.246932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.12511 -40.45240 -39.56767 -38.50976 -35.98703 -35.16513 -34.36282 -33.24799 -32.18608 -30.69480 -29.92827 -28.78586 -27.21115 -26.42090 -25.59432 -25.00585 -22.55642 -21.47949 -21.27719 -20.84313 -20.61550 -19.80250 -18.20618 -17.88259 -17.22946 -17.09614 -16.82306 -16.55387 -16.41613 -16.06323 -15.84903 -15.55265 -15.32217 -15.14972 -14.97605 -14.66974 -14.34910 -14.18227 -13.86309 -13.82605 -13.59256 -13.38866 -13.23868 -13.14515 -13.12086 -12.95550 -12.76941 -12.72206 -12.41182 -12.37825 -12.31726 -12.24634 -12.12660 -11.78888 -11.65902 -11.60040 -11.43180 -11.40334 -10.78810 -10.24341 -9.97295 -9.96304 -9.47861 -9.23560 -8.44760 -5.92598 1.38272 1.42162 1.54125 1.71038 2.09227 2.16507 2.29180 2.73615 3.10100 3.22549 3.43973 3.65156 3.69885 3.75343 3.97713 4.01944 4.03367 4.20767 4.27441 4.30368 4.34193 4.37110 4.39664 4.52959 4.53202 4.58408 4.62223 4.63782 4.69600 4.72398 4.78623 4.80755 4.85964 4.94928 4.98673 5.03265 5.13532 5.16046 5.21461 5.28875 5.36802 5.41708 5.42910 5.53583 5.82880 5.88169 5.90977 6.07056 6.19602 6.63347 6.66748 7.15873 7.34519 7.60314 8.16110 8.72574 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002221 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.314714 B =12601.842027 C =14210.697588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.069 0.931 4 C 0.135 3.865 5 N -0.708 5.708 6 C 0.511 3.489 7 O -0.571 6.571 8 C 0.026 3.974 9 N -0.509 5.509 10 C 0.033 3.967 11 C -0.118 4.118 12 C -0.094 4.094 13 H 0.083 0.917 14 C -0.140 4.140 15 C 0.034 3.966 16 N -0.522 5.522 17 C 0.032 3.968 18 C 0.054 3.946 19 C 0.443 3.557 20 O -0.612 6.612 21 N -0.576 5.576 22 C -0.328 4.328 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.990 3.010 27 H -0.271 1.271 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.029 0.971 50 H 0.117 0.883 51 H 0.064 0.936 52 H 0.395 0.605 53 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 -7.220 20.509 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.086 0.914 4 C 0.011 3.989 5 N -0.361 5.361 6 C 0.298 3.702 7 O -0.450 6.450 8 C -0.105 4.105 9 N -0.233 5.233 10 C -0.095 4.095 11 C -0.156 4.156 12 C -0.113 4.113 13 H 0.101 0.899 14 C -0.198 4.198 15 C -0.094 4.094 16 N -0.247 5.247 17 C -0.116 4.116 18 C -0.077 4.077 19 C 0.231 3.769 20 O -0.498 6.498 21 N -0.214 5.214 22 C -0.458 4.458 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.814 3.186 27 H -0.197 1.197 28 H -0.198 1.198 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.048 0.952 50 H 0.135 0.865 51 H 0.082 0.918 52 H 0.229 0.771 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.832 -7.687 21.559 22.904 hybrid contribution 0.461 0.516 -2.258 2.361 sum -0.371 -7.172 19.301 20.594 Atomic orbital electron populations 1.21924 0.92369 1.02981 1.03063 1.22038 0.97338 0.96174 0.88278 0.91356 1.21322 0.99551 0.80987 0.97086 1.45844 1.54578 1.08873 1.26792 1.20800 0.79250 0.88751 0.81396 1.90650 1.39743 1.79242 1.35365 1.22180 1.03252 0.91010 0.94083 1.65171 1.05979 1.13898 1.38282 1.23115 0.88665 0.99456 0.98263 1.22394 0.98054 0.95351 0.99780 1.21874 0.94262 0.95007 1.00133 0.89861 1.21840 1.02316 0.94912 1.00734 1.23331 0.99876 0.86594 0.99555 1.61577 1.10897 1.51730 1.00543 1.22323 0.87238 0.99543 1.02467 1.21816 1.03118 0.94599 0.88154 1.20765 0.83193 0.88302 0.84664 1.90472 1.47480 1.25904 1.85958 1.41940 1.53628 1.20687 1.05126 1.19613 1.37627 1.02841 0.85699 0.90371 1.25992 0.96451 0.97861 1.01067 1.69669 1.40979 1.20651 1.24898 0.84969 0.78633 0.77842 0.77158 1.19658 1.19769 1.19900 0.92011 0.90002 0.91750 0.90276 0.92813 0.75026 0.91058 0.85775 0.91458 0.94630 0.91261 0.90286 0.91665 0.93071 0.91617 0.93018 0.89060 0.91728 0.92691 0.95206 0.86500 0.91815 0.77103 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.87 71.98 0.64 -1.90 16 2 C 0.07 1.45 2.32 44.91 0.10 1.55 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.13 2.95 4.60 86.38 0.40 3.35 16 5 N -0.71 -16.11 5.11 -463.07 -2.37 -18.47 16 6 C 0.51 13.16 7.63 87.66 0.67 13.83 16 7 O -0.57 -18.77 14.84 -3.03 -0.05 -18.82 16 8 C 0.03 0.54 5.30 85.56 0.45 0.99 16 9 N -0.51 -11.19 5.06 -886.02 -4.49 -15.67 16 10 C 0.03 0.75 5.80 86.45 0.50 1.25 16 11 C -0.12 -2.03 6.65 31.49 0.21 -1.82 16 12 C -0.09 -1.37 3.65 -9.90 -0.04 -1.40 16 13 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 14 C -0.14 -1.61 8.91 71.98 0.64 -0.96 16 15 C 0.03 0.55 6.03 86.45 0.52 1.07 16 16 N -0.52 -14.93 3.83 -901.60 -3.45 -18.38 16 17 C 0.03 1.01 8.57 127.69 1.09 2.10 16 18 C 0.05 1.71 5.26 85.56 0.45 2.16 16 19 C 0.44 19.99 7.41 87.66 0.65 20.64 16 20 O -0.61 -32.05 13.98 -3.06 -0.04 -32.09 16 21 N -0.58 -28.53 5.29 -306.98 -1.62 -30.16 16 22 C -0.33 -18.18 9.68 84.04 0.81 -17.36 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 26 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 30 H 0.06 1.13 7.15 -2.39 -0.02 1.11 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.13 6.20 -2.39 -0.01 1.12 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.34 6.83 -2.39 -0.02 1.32 16 35 H 0.41 9.06 7.29 -92.71 -0.68 8.38 16 36 H 0.07 1.43 7.88 -2.39 -0.02 1.42 16 37 H 0.12 1.99 8.13 -2.39 -0.02 1.97 16 38 H 0.07 1.88 6.91 -2.39 -0.02 1.86 16 39 H 0.04 0.81 7.82 -2.39 -0.02 0.80 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.18 7.71 -2.39 -0.02 1.17 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 0.64 8.12 -2.38 -0.02 0.62 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.05 0.80 7.70 -2.39 -0.02 0.78 16 46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.95 6.74 -2.39 -0.02 1.93 16 48 H 0.05 2.16 5.78 -2.39 -0.01 2.15 16 49 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 50 H 0.12 3.19 5.83 -2.39 -0.01 3.17 16 51 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 52 H 0.40 18.64 7.90 -92.70 -0.73 17.91 16 53 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -69.24 413.05 -2.63 -71.87 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.49 Total: 42.71 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 7.57 Total: 23.22 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -11.65 Total: -131.27 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.09 Total: -50.91 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.24 -2.63 -71.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485349042.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.630 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds