Wall clock time and date at job start Sat Apr 11 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47746 * 2 1 4 4 C 1.53003 * 109.47150 * 119.99867 * 2 1 3 5 5 N 1.46500 * 109.47289 * 175.31221 * 4 2 1 6 6 C 1.34777 * 119.99684 * 175.18682 * 5 4 2 7 7 O 1.21283 * 120.00461 * 359.73195 * 6 5 4 8 8 C 1.50705 * 119.99497 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46826 * 179.72947 * 8 6 5 10 10 H 1.09006 * 110.63187 * 56.65020 * 9 8 6 11 11 C 1.55144 * 110.70289 * 179.97438 * 9 8 6 12 12 C 1.54909 * 101.64989 * 154.03394 * 11 9 8 13 13 N 1.47839 * 104.79782 * 322.92892 * 12 11 9 14 14 C 1.46903 * 110.99957 * 146.36325 * 13 12 11 15 15 C 1.47442 * 108.57040 * 24.09841 * 13 12 11 16 16 N 1.46899 * 109.47037 * 239.99329 * 2 1 3 17 17 C 1.46905 * 110.99831 * 72.49823 * 16 2 1 18 18 C 1.46902 * 111.00134 * 308.54418 * 16 2 1 19 19 C 1.50705 * 109.47150 * 189.99531 * 18 16 2 20 20 O 1.21294 * 119.99875 * 0.02562 * 19 18 16 21 21 N 1.34774 * 119.99962 * 179.97438 * 19 18 16 22 22 C 1.37102 * 119.99734 * 180.02562 * 21 19 18 23 23 H 1.07993 * 119.99931 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99616 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00160 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99583 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47331 * 90.00228 * 26 24 22 28 28 H 1.48501 * 109.46950 * 209.99848 * 26 24 22 29 29 H 1.48494 * 109.47240 * 329.99864 * 26 24 22 30 30 H 1.08995 * 109.47051 * 60.00096 * 1 2 3 31 31 H 1.09000 * 109.47158 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47026 * 300.00665 * 1 2 3 33 33 H 1.08996 * 109.47106 * 55.31394 * 4 2 1 34 34 H 1.09006 * 109.46960 * 295.31583 * 4 2 1 35 35 H 0.96997 * 120.00344 * 355.19281 * 5 4 2 36 36 H 1.08999 * 109.47142 * 299.72820 * 8 6 5 37 37 H 1.08998 * 109.47358 * 59.73128 * 8 6 5 38 38 H 1.09000 * 110.99203 * 272.12201 * 11 9 8 39 39 H 1.08994 * 110.99490 * 35.94488 * 11 9 8 40 40 H 1.09003 * 110.37219 * 204.09616 * 12 11 9 41 41 H 1.09002 * 110.46457 * 81.80767 * 12 11 9 42 42 H 1.08996 * 109.47169 * 299.15921 * 14 13 12 43 43 H 1.08998 * 109.47024 * 59.16024 * 14 13 12 44 44 H 1.09003 * 109.47292 * 179.15747 * 14 13 12 45 45 H 1.08999 * 109.88626 * 239.60804 * 15 13 12 46 46 H 1.09002 * 110.02791 * 118.49131 * 15 13 12 47 47 H 1.09002 * 109.46899 * 53.76118 * 17 16 2 48 48 H 1.09000 * 109.47227 * 173.76080 * 17 16 2 49 49 H 1.09001 * 109.46708 * 293.76260 * 17 16 2 50 50 H 1.08997 * 109.46937 * 309.99689 * 18 16 2 51 51 H 1.08994 * 109.47111 * 70.00098 * 18 16 2 52 52 H 0.96998 * 120.00117 * 0.02562 * 21 19 18 53 53 H 0.96998 * 119.99934 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5007 -0.8198 1.1942 6 6 4.1812 -1.3331 2.2381 7 8 3.5849 -1.7090 3.2251 8 6 5.6838 -1.4339 2.1817 9 6 6.2036 -2.0405 3.4866 10 1 5.7434 -3.0117 3.6688 11 6 7.7503 -2.1581 3.4589 12 6 8.0946 -2.1127 4.9686 13 7 7.1344 -1.1482 5.5460 14 6 6.7602 -1.5325 6.9136 15 6 5.9487 -1.0855 4.6718 16 7 2.0196 -0.6926 -1.1994 17 6 1.8062 0.1231 -2.4023 18 6 1.3894 -2.0122 -1.3394 19 6 2.0858 -2.7886 -2.4273 20 8 3.0159 -2.2917 -3.0266 21 7 1.6758 -4.0353 -2.7336 22 6 2.3097 -4.7418 -3.7229 23 1 3.1378 -4.2993 -4.2565 24 6 1.8865 -6.0270 -4.0390 25 7 0.8785 -6.5651 -3.3900 26 14 2.7507 -6.9898 -5.3865 27 1 3.8687 -7.7702 -4.7981 28 1 1.7850 -7.9165 -6.0298 29 1 3.2852 -6.0481 -6.4027 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6098 -1.7218 1.2923 34 1 1.7468 -0.1612 2.1373 35 1 3.9780 -0.5155 0.4065 36 1 5.9742 -2.0691 1.3448 37 1 6.1100 -0.4396 2.0481 38 1 8.0621 -3.1039 3.0156 39 1 8.1967 -1.3154 2.9312 40 1 9.1169 -1.7639 5.1143 41 1 7.9621 -3.0963 5.4194 42 1 6.2851 -2.5133 6.8983 43 1 7.6533 -1.5711 7.5373 44 1 6.0647 -0.7982 7.3200 45 1 5.8116 -0.0682 4.3054 46 1 5.0627 -1.4043 5.2209 47 1 2.2480 1.1088 -2.2560 48 1 2.2756 -0.3620 -3.2582 49 1 0.7368 0.2277 -2.5853 50 1 1.4695 -2.5549 -0.3976 51 1 0.3381 -1.8871 -1.5985 52 1 0.9322 -4.4328 -2.2540 53 1 0.5834 -7.4624 -3.6104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485373875.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:23 Heat of formation + Delta-G solvation = -89.509968 kcal Electronic energy + Delta-G solvation = -30502.598449 eV Core-core repulsion = 26408.047498 eV Total energy + Delta-G solvation = -4094.550951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.13423 -40.51268 -39.56848 -38.62848 -35.97452 -35.21258 -34.28922 -33.26319 -32.09744 -30.85397 -29.55634 -28.61160 -27.20841 -26.69680 -25.74382 -24.92882 -22.01082 -21.83436 -21.75695 -20.84233 -20.40637 -19.70105 -18.16078 -17.95906 -17.33537 -17.02411 -16.82426 -16.50963 -16.21602 -16.07464 -15.90263 -15.60529 -15.37470 -15.04820 -14.93831 -14.67999 -14.27807 -14.19364 -13.94129 -13.84138 -13.64825 -13.60093 -13.46520 -13.05883 -13.01477 -12.83457 -12.72384 -12.51942 -12.45046 -12.39194 -12.26997 -12.17145 -12.12951 -12.09580 -11.78632 -11.72575 -11.60737 -11.43608 -10.76809 -10.26080 -9.99045 -9.94873 -9.31846 -9.18165 -8.45726 -5.94104 1.37709 1.41242 1.53796 1.73707 2.07236 2.26479 2.33384 2.80264 3.08982 3.21431 3.41196 3.57912 3.70174 3.79248 3.87925 4.00803 4.09766 4.23162 4.30620 4.35652 4.37487 4.40243 4.46960 4.49657 4.52196 4.55106 4.59771 4.65546 4.68554 4.69222 4.78119 4.84355 4.87388 4.90211 4.94885 4.98122 5.02066 5.11425 5.16152 5.25237 5.28469 5.35551 5.41820 5.56733 5.88964 5.97449 6.07661 6.09289 6.21712 6.61339 6.68719 7.14207 7.35455 7.58182 8.13414 8.71903 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.002594 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.143097 B =10790.067390 C =12701.373438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 H 0.111 0.889 4 C 0.130 3.870 5 N -0.711 5.711 6 C 0.505 3.495 7 O -0.586 6.586 8 C -0.125 4.125 9 C -0.091 4.091 10 H 0.060 0.940 11 C -0.120 4.120 12 C 0.038 3.962 13 N -0.547 5.547 14 C 0.020 3.980 15 C 0.058 3.942 16 N -0.521 5.521 17 C 0.026 3.974 18 C 0.058 3.942 19 C 0.444 3.556 20 O -0.608 6.608 21 N -0.578 5.578 22 C -0.327 4.327 23 H 0.081 0.919 24 C -0.016 4.016 25 N -0.924 5.924 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.273 1.273 29 H -0.271 1.271 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.415 0.585 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.020 0.980 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.086 0.914 48 H 0.056 0.944 49 H 0.029 0.971 50 H 0.093 0.907 51 H 0.067 0.933 52 H 0.393 0.607 53 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 13.535 14.499 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.035 4.035 3 H 0.129 0.871 4 C 0.005 3.995 5 N -0.362 5.362 6 C 0.293 3.707 7 O -0.467 6.467 8 C -0.165 4.165 9 C -0.111 4.111 10 H 0.078 0.922 11 C -0.158 4.158 12 C -0.089 4.089 13 N -0.271 5.271 14 C -0.129 4.129 15 C -0.069 4.069 16 N -0.245 5.245 17 C -0.122 4.122 18 C -0.074 4.074 19 C 0.231 3.769 20 O -0.493 6.493 21 N -0.216 5.216 22 C -0.457 4.457 23 H 0.099 0.901 24 C -0.215 4.215 25 N -0.565 5.565 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.198 1.198 29 H -0.195 1.195 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.252 0.748 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.105 0.895 48 H 0.075 0.925 49 H 0.047 0.953 50 H 0.111 0.889 51 H 0.085 0.915 52 H 0.226 0.774 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.384 13.858 14.861 21.620 hybrid contribution -1.507 -1.699 -0.874 2.434 sum 5.877 12.159 13.986 19.442 Atomic orbital electron populations 1.22378 0.95319 1.02739 1.03721 1.22077 0.94424 0.98670 0.88291 0.87093 1.21384 0.80488 1.00001 0.97622 1.45897 1.07688 1.63220 1.19378 1.21163 0.91204 0.76162 0.82154 1.90655 1.71874 1.50481 1.33706 1.21687 0.90238 1.04951 0.99605 1.22065 0.96498 0.98625 0.93921 0.92195 1.22797 0.93182 1.03641 0.96184 1.23128 0.97461 0.94037 0.94266 1.63644 1.12510 1.48156 1.02836 1.22556 1.01508 0.98747 0.90075 1.22734 0.91566 0.99279 0.93364 1.61724 1.57675 1.01497 1.03627 1.22443 0.99214 0.97744 0.92750 1.21722 0.96464 0.91541 0.97629 1.20731 0.86452 0.82609 0.87061 1.90452 1.32469 1.69961 1.56450 1.41971 1.32015 1.13610 1.33979 1.19649 1.14971 0.97403 1.13675 0.90059 1.26041 0.97180 0.97549 1.00771 1.69681 1.27111 1.17019 1.42719 0.84943 0.77904 0.77815 0.77796 1.19771 1.19780 1.19516 0.91486 0.92690 0.89898 0.93620 0.90282 0.74837 0.87788 0.86292 0.89718 0.89160 0.88934 0.93678 0.96092 0.90095 0.91428 0.91116 0.93965 0.89539 0.92491 0.95289 0.88859 0.91521 0.77385 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.41 71.98 0.61 -2.62 16 2 C 0.07 1.48 2.47 44.92 0.11 1.59 16 3 H 0.11 1.81 7.93 -2.39 -0.02 1.79 16 4 C 0.13 2.96 4.94 86.38 0.43 3.39 16 5 N -0.71 -16.80 5.42 -463.04 -2.51 -19.31 16 6 C 0.51 13.13 7.62 87.66 0.67 13.80 16 7 O -0.59 -19.30 14.84 -3.04 -0.05 -19.35 16 8 C -0.12 -2.45 5.09 29.85 0.15 -2.30 16 9 C -0.09 -1.91 2.55 -9.61 -0.02 -1.93 16 10 H 0.06 1.53 8.04 -2.38 -0.02 1.51 16 11 C -0.12 -1.93 6.52 31.98 0.21 -1.72 16 12 C 0.04 0.64 6.73 86.78 0.58 1.22 16 13 N -0.55 -10.94 5.44 -911.69 -4.96 -15.90 16 14 C 0.02 0.34 9.12 127.69 1.16 1.51 16 15 C 0.06 1.30 5.49 86.65 0.48 1.78 16 16 N -0.52 -14.44 3.82 -901.59 -3.45 -17.88 16 17 C 0.03 0.72 8.91 127.69 1.14 1.86 16 18 C 0.06 1.92 4.31 85.56 0.37 2.29 16 19 C 0.44 20.42 7.52 87.66 0.66 21.08 16 20 O -0.61 -31.59 13.88 -3.07 -0.04 -31.63 16 21 N -0.58 -29.46 5.29 -306.98 -1.62 -31.08 16 22 C -0.33 -18.38 9.68 84.04 0.81 -17.57 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 25 N -0.92 -50.30 13.05 21.66 0.28 -50.01 16 26 Si 0.99 42.84 29.55 68.60 2.03 44.86 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 29 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 30 H 0.07 1.16 6.92 -2.39 -0.02 1.14 16 31 H 0.05 1.09 6.54 -2.39 -0.02 1.08 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.23 6.65 -2.39 -0.02 1.22 16 34 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.41 9.23 8.08 -92.71 -0.75 8.49 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.12 1.77 8.06 -2.39 -0.02 1.75 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.04 0.75 7.78 -2.39 -0.02 0.73 16 42 H 0.02 0.39 8.10 -2.39 -0.02 0.37 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.57 7.77 -2.39 -0.02 1.55 16 46 H 0.04 1.12 7.11 -2.39 -0.02 1.10 16 47 H 0.09 1.87 7.98 -2.39 -0.02 1.85 16 48 H 0.06 2.07 5.92 -2.39 -0.01 2.05 16 49 H 0.03 0.72 6.96 -2.39 -0.02 0.71 16 50 H 0.09 3.03 6.30 -2.39 -0.02 3.01 16 51 H 0.07 2.04 6.81 -2.39 -0.02 2.02 16 52 H 0.39 19.39 7.90 -92.71 -0.73 18.66 16 53 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -69.50 412.84 -3.07 -72.57 By element: Atomic # 1 Polarization: 46.32 SS G_CDS: -0.57 Total: 45.75 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 7.82 Total: 21.98 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -12.26 Total: -134.18 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.09 Total: -50.98 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -69.50 -3.07 -72.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485373875.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.942 kcal (2) G-P(sol) polarization free energy of solvation -69.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds