Wall clock time and date at job start Sat Apr 11 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47096 * 2 1 4 4 C 1.46897 * 110.99716 * 66.05086 * 3 2 1 5 5 C 1.46901 * 111.00257 * 190.00345 * 3 2 1 6 6 C 1.52994 * 109.47401 * 170.00295 * 5 3 2 7 7 C 1.50703 * 109.47095 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00298 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99785 * 180.02562 * 7 6 5 10 10 C 1.47428 * 125.64780 * 359.96987 * 9 7 6 11 11 C 1.54913 * 104.83199 * 204.16650 * 10 9 7 12 12 C 1.55157 * 101.58039 * 322.99121 * 11 10 9 13 13 H 1.08994 * 110.72470 * 276.96160 * 12 11 10 14 14 N 1.46898 * 110.71938 * 153.86222 * 12 11 10 15 15 C 1.46906 * 110.99888 * 86.45374 * 14 12 11 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 12 17 17 O 1.21297 * 119.99980 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99944 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99682 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00492 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46948 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47378 * 120.00054 * 23 21 19 26 26 H 1.48501 * 109.47174 * 239.99969 * 23 21 19 27 27 C 1.47021 * 125.64787 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.88469 * 59.48561 * 27 9 7 29 29 C 1.53003 * 109.88134 * 298.31903 * 27 9 7 30 30 H 1.08997 * 109.47432 * 59.99935 * 1 2 3 31 31 H 1.09005 * 109.47311 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47172 * 299.99495 * 1 2 3 33 33 H 1.09003 * 109.47172 * 240.00505 * 2 1 3 34 34 H 1.08997 * 109.47432 * 120.00065 * 2 1 3 35 35 H 1.09008 * 109.47068 * 183.95224 * 4 3 2 36 36 H 1.08997 * 109.47061 * 303.95311 * 4 3 2 37 37 H 1.09000 * 109.47329 * 63.95436 * 4 3 2 38 38 H 1.08999 * 109.47077 * 49.99747 * 5 3 2 39 39 H 1.09003 * 109.46974 * 290.00439 * 5 3 2 40 40 H 1.08999 * 109.47453 * 59.99682 * 6 5 3 41 41 H 1.09003 * 109.47174 * 300.00021 * 6 5 3 42 42 H 1.09002 * 110.36632 * 85.33078 * 10 9 7 43 43 H 1.08993 * 110.36844 * 323.00320 * 10 9 7 44 44 H 1.08997 * 111.00332 * 204.91969 * 11 10 9 45 45 H 1.09000 * 111.00128 * 81.06531 * 11 10 9 46 46 H 1.00902 * 111.00533 * 322.49780 * 14 12 11 47 47 H 1.09000 * 109.47033 * 300.00113 * 15 14 12 48 48 H 1.09001 * 109.46544 * 60.00058 * 15 14 12 49 49 H 0.96996 * 119.99844 * 359.97438 * 18 16 15 50 50 H 0.97001 * 120.00876 * 179.97438 * 22 21 19 51 51 H 1.09003 * 109.47086 * 302.19341 * 29 27 9 52 52 H 1.09001 * 109.46964 * 62.18985 * 29 27 9 53 53 H 1.08998 * 109.47155 * 182.19313 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0668 1.2534 5 6 3.4684 1.4312 -0.2382 6 6 3.8998 2.8792 -0.4791 7 6 5.3860 2.9265 -0.7241 8 8 6.0363 1.9029 -0.7072 9 7 5.9927 4.1064 -0.9610 10 6 5.3265 5.4207 -1.0092 11 6 6.2504 6.3016 -1.8868 12 6 7.6557 5.8030 -1.4578 13 1 7.9784 6.2995 -0.5428 14 7 8.6330 6.0143 -2.5340 15 6 9.2088 7.3640 -2.4646 16 6 10.2040 7.5436 -3.5819 17 8 10.4134 6.6363 -4.3592 18 7 10.8622 8.7120 -3.7168 19 6 11.7672 8.8755 -4.7335 20 1 11.9530 8.0680 -5.4262 21 6 12.4453 10.0803 -4.8729 22 7 12.2188 11.0631 -4.0305 23 14 13.6778 10.3034 -6.2587 24 1 13.7493 9.0572 -7.0630 25 1 13.2485 11.4294 -7.1265 26 1 15.0161 10.6009 -5.6878 27 6 7.4284 4.2960 -1.2151 28 1 7.7267 3.7292 -2.0971 29 6 8.2369 3.8369 0.0000 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 1.9824 3.1098 1.1989 36 1 0.5920 2.0178 1.4053 37 1 2.1770 1.5789 2.0859 38 1 3.7121 0.8291 -1.1135 39 1 3.9925 1.0359 0.6320 40 1 3.6561 3.4814 0.3962 41 1 3.3757 3.2745 -1.3493 42 1 5.2425 5.8405 -0.0068 43 1 4.3417 5.3302 -1.4673 44 1 6.1220 7.3581 -1.6512 45 1 6.0764 6.1153 -2.9466 46 1 8.2181 5.8442 -3.4379 47 1 8.4142 8.1035 -2.5639 48 1 9.7104 7.4961 -1.5059 49 1 10.6950 9.4374 -3.0949 50 1 12.6924 11.9040 -4.1275 51 1 7.9183 4.3952 0.8804 52 1 8.0715 2.7723 0.1653 53 1 9.2969 4.0164 -0.1801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486093324.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:01 Heat of formation + Delta-G solvation = -90.636354 kcal Electronic energy + Delta-G solvation = -29535.778185 eV Core-core repulsion = 25441.178390 eV Total energy + Delta-G solvation = -4094.599795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.40992 -40.16568 -39.26428 -38.42126 -36.19040 -35.53758 -33.59864 -33.24779 -32.28810 -31.65284 -30.14971 -28.41046 -27.57017 -26.47897 -25.04794 -24.43716 -23.13507 -21.93573 -21.57773 -21.05132 -19.95421 -19.77424 -18.32325 -17.68719 -17.61674 -16.98076 -16.73102 -16.48690 -16.32407 -15.99945 -15.85709 -15.48406 -15.24676 -15.14974 -14.85027 -14.71481 -14.36231 -14.08814 -14.01624 -13.72925 -13.69510 -13.48664 -13.25568 -13.11243 -13.07581 -12.91921 -12.80902 -12.68261 -12.65928 -12.53187 -12.39626 -12.28035 -12.11835 -11.98442 -11.87050 -11.75547 -11.70505 -11.50553 -10.85724 -10.33581 -9.99984 -9.68370 -9.36671 -9.28285 -8.46129 -5.94367 1.36880 1.42627 1.56246 1.61874 1.86026 2.07039 2.30136 2.88558 2.95667 3.21553 3.42092 3.51128 3.68237 3.84662 3.91688 4.03643 4.10309 4.14940 4.23038 4.29963 4.30170 4.36232 4.42352 4.52268 4.53272 4.54844 4.59111 4.61273 4.63265 4.65966 4.74164 4.75742 4.89176 4.93455 5.00472 5.03218 5.04307 5.05988 5.13092 5.13649 5.23916 5.37020 5.37832 5.42350 5.90961 6.01652 6.08630 6.11969 6.35024 6.54396 6.61704 7.14274 7.15258 7.58050 8.13955 8.71294 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.034433 B = 0.001584 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.967240 B =17676.604181 C =17781.757796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.547 5.547 4 C 0.014 3.986 5 C 0.075 3.925 6 C -0.118 4.118 7 C 0.523 3.477 8 O -0.587 6.587 9 N -0.614 5.614 10 C 0.103 3.897 11 C -0.163 4.163 12 C 0.088 3.912 13 H 0.111 0.889 14 N -0.676 5.676 15 C 0.070 3.930 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.276 1.276 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.142 3.858 28 H 0.051 0.949 29 C -0.147 4.147 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.026 0.974 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.071 0.929 46 H 0.346 0.654 47 H 0.076 0.924 48 H 0.107 0.893 49 H 0.398 0.602 50 H 0.278 0.722 51 H 0.069 0.931 52 H 0.044 0.956 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.302 -10.684 14.132 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.272 5.272 4 C -0.133 4.133 5 C -0.053 4.053 6 C -0.158 4.158 7 C 0.313 3.687 8 O -0.468 6.468 9 N -0.348 5.348 10 C -0.019 4.019 11 C -0.203 4.203 12 C -0.023 4.023 13 H 0.129 0.871 14 N -0.308 5.308 15 C -0.062 4.062 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.464 4.464 20 H 0.094 0.906 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.197 1.197 27 C 0.038 3.962 28 H 0.069 0.931 29 C -0.206 4.206 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.165 0.835 47 H 0.094 0.906 48 H 0.125 0.875 49 H 0.232 0.768 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.063 0.937 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.489 -11.741 13.610 30.378 hybrid contribution 0.772 0.397 -0.238 0.900 sum -23.717 -11.344 13.371 29.496 Atomic orbital electron populations 1.21760 0.93443 1.02286 1.02532 1.22152 0.97152 0.88281 1.00645 1.62050 1.12640 1.16690 1.35813 1.22588 1.02236 0.99706 0.88811 1.21689 0.87325 0.95819 1.00497 1.21552 0.89273 0.98963 1.05998 1.20910 0.90946 0.81396 0.75440 1.90690 1.68082 1.34502 1.53496 1.48684 1.08560 1.07591 1.69971 1.22532 0.97107 0.80862 1.01436 1.23575 0.94709 1.01616 1.00357 1.22683 0.90421 0.93446 0.95734 0.87088 1.59890 1.37090 1.26596 1.07177 1.21522 0.96319 0.90814 0.97507 1.20970 0.85540 0.82635 0.88512 1.90509 1.69705 1.42663 1.48426 1.41910 1.37035 1.13609 1.28378 1.19683 1.18479 0.99935 1.08291 0.90556 1.25971 0.99914 0.94483 1.00624 1.69660 1.43547 1.04915 1.37803 0.84914 0.77791 0.78156 0.77741 1.20025 1.19496 1.19688 1.21344 0.80750 0.96398 0.97745 0.93076 1.21956 1.00095 1.01062 0.97439 0.92146 0.91366 0.92088 0.91222 0.95129 0.90000 0.89996 0.96004 0.91708 0.95559 0.86579 0.86576 0.88619 0.88091 0.87331 0.91027 0.83480 0.90583 0.87535 0.76839 0.91300 0.91241 0.93685 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.84 71.98 0.71 -0.63 16 2 C 0.05 0.58 5.68 86.30 0.49 1.07 16 3 N -0.55 -7.55 4.76 -922.46 -4.39 -11.94 16 4 C 0.01 0.14 9.13 127.69 1.17 1.31 16 5 C 0.08 1.28 4.25 86.30 0.37 1.65 16 6 C -0.12 -1.65 4.63 29.85 0.14 -1.51 16 7 C 0.52 11.62 7.64 87.66 0.67 12.29 16 8 O -0.59 -18.53 15.03 -3.02 -0.05 -18.58 16 9 N -0.61 -11.97 3.06 -788.04 -2.42 -14.38 16 10 C 0.10 1.16 6.69 86.86 0.58 1.74 16 11 C -0.16 -2.35 6.63 31.99 0.21 -2.14 16 12 C 0.09 1.82 2.76 46.11 0.13 1.95 16 13 H 0.11 2.00 7.61 -2.39 -0.02 1.98 16 14 N -0.68 -20.03 5.91 -489.44 -2.89 -22.92 16 15 C 0.07 2.20 6.02 85.56 0.52 2.72 16 16 C 0.44 20.18 7.82 87.66 0.69 20.86 16 17 O -0.63 -34.62 15.78 -3.08 -0.05 -34.67 16 18 N -0.57 -28.67 5.29 -306.98 -1.62 -30.29 16 19 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 22 N -0.92 -48.69 13.05 21.66 0.28 -48.40 16 23 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 C 0.14 3.43 3.21 45.34 0.15 3.58 16 28 H 0.05 1.59 8.03 -2.39 -0.02 1.57 16 29 C -0.15 -3.61 9.10 71.98 0.65 -2.96 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.06 0.50 6.47 -2.39 -0.02 0.48 16 33 H 0.07 0.96 7.93 -2.39 -0.02 0.94 16 34 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 35 H 0.08 0.61 6.47 -2.38 -0.02 0.60 16 36 H 0.08 0.66 6.30 -2.39 -0.02 0.64 16 37 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.06 1.33 7.89 -2.39 -0.02 1.31 16 39 H 0.03 0.53 8.08 -2.39 -0.02 0.51 16 40 H 0.12 1.07 6.55 -2.39 -0.02 1.06 16 41 H 0.12 1.32 7.85 -2.39 -0.02 1.30 16 42 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 0.73 7.48 -2.39 -0.02 0.72 16 44 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.20 7.81 -2.39 -0.02 1.18 16 46 H 0.35 11.07 8.00 -89.69 -0.72 10.36 16 47 H 0.08 1.95 8.13 -2.39 -0.02 1.93 16 48 H 0.11 2.97 8.08 -2.39 -0.02 2.95 16 49 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 50 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 51 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.04 1.29 6.90 -2.39 -0.02 1.27 16 53 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.18 420.41 -1.91 -76.09 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.54 Total: 38.51 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 7.74 Total: 21.82 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -11.04 Total: -127.93 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.09 Total: -53.25 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.18 -1.91 -76.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486093324.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.545 kcal (2) G-P(sol) polarization free energy of solvation -74.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds