Wall clock time and date at job start Sat Apr 11 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.99529 * 2 1 4 4 C 1.54333 * 109.99108 * 238.96275 * 2 1 3 5 5 C 1.55153 * 103.02086 * 218.66869 * 4 2 1 6 6 H 1.09005 * 111.00064 * 277.23403 * 5 4 2 7 7 N 1.46894 * 111.00811 * 153.38109 * 5 4 2 8 8 C 1.46902 * 111.00083 * 161.34827 * 7 5 4 9 9 C 1.50703 * 109.47004 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00183 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99888 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99999 * 179.97438 * 11 9 8 13 13 H 1.07996 * 120.00086 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00154 * 180.02562 * 12 11 9 15 15 N 1.31419 * 119.99675 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00330 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47457 * 59.99870 * 16 14 12 18 18 H 1.48498 * 109.47562 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46900 * 300.00090 * 16 14 12 20 20 C 1.54915 * 101.58374 * 35.30212 * 5 4 2 21 21 N 1.47017 * 109.87898 * 121.09608 * 2 1 3 22 22 C 1.34777 * 125.64838 * 298.38924 * 21 2 1 23 23 O 1.21279 * 120.00162 * 359.72427 * 22 21 2 24 24 C 1.50706 * 120.00146 * 179.72146 * 22 21 2 25 25 C 1.52999 * 109.46953 * 180.02562 * 24 22 21 26 26 C 1.53006 * 109.46623 * 179.97438 * 25 24 22 27 27 N 1.46902 * 109.46626 * 179.97438 * 26 25 24 28 28 C 1.46901 * 110.99644 * 170.00094 * 27 26 25 29 29 C 1.46902 * 110.99994 * 293.95302 * 27 26 25 30 30 H 1.08996 * 109.47732 * 300.36117 * 1 2 3 31 31 H 1.09003 * 109.47184 * 60.35692 * 1 2 3 32 32 H 1.09004 * 109.47607 * 180.35743 * 1 2 3 33 33 H 1.08996 * 110.85018 * 100.19527 * 4 2 1 34 34 H 1.09006 * 110.66509 * 337.04448 * 4 2 1 35 35 H 1.00899 * 111.00113 * 285.29885 * 7 5 4 36 36 H 1.08997 * 109.47039 * 299.99728 * 8 7 5 37 37 H 1.09003 * 109.47309 * 59.99769 * 8 7 5 38 38 H 0.97005 * 120.00342 * 0.02562 * 11 9 8 39 39 H 0.97005 * 119.99612 * 180.02562 * 15 14 12 40 40 H 1.08997 * 110.36824 * 204.15337 * 20 5 4 41 41 H 1.09003 * 110.45331 * 81.87654 * 20 5 4 42 42 H 1.09000 * 109.46974 * 60.00144 * 24 22 21 43 43 H 1.09001 * 109.46547 * 300.00234 * 24 22 21 44 44 H 1.09000 * 109.47486 * 60.00062 * 25 24 22 45 45 H 1.09001 * 109.47362 * 299.99339 * 25 24 22 46 46 H 1.08993 * 109.46955 * 300.00075 * 26 25 24 47 47 H 1.09000 * 109.47050 * 59.99904 * 26 25 24 48 48 H 1.08997 * 109.47092 * 60.00167 * 28 27 26 49 49 H 1.09003 * 109.47270 * 179.97438 * 28 27 26 50 50 H 1.09002 * 109.47323 * 300.00045 * 28 27 26 51 51 H 1.08992 * 109.47140 * 60.00797 * 29 27 26 52 52 H 1.09002 * 109.46408 * 180.02562 * 29 27 26 53 53 H 1.09000 * 109.47025 * 299.99832 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6915 6 1 4.1669 -0.8768 -0.6579 7 7 3.5482 -2.7275 -1.4834 8 6 4.9186 -3.2111 -1.2683 9 6 5.1495 -4.4501 -2.0947 10 8 4.2602 -4.8869 -2.7943 11 7 6.3445 -5.0721 -2.0570 12 6 6.5545 -6.1995 -2.8084 13 1 5.7624 -6.5889 -3.4307 14 6 7.7864 -6.8411 -2.7692 15 7 8.7501 -6.3674 -2.0115 16 14 8.0727 -8.3767 -3.7934 17 1 7.8808 -8.0561 -5.2306 18 1 9.4578 -8.8660 -3.5755 19 1 7.1069 -9.4293 -3.3878 20 6 2.8099 -1.8825 0.7369 21 7 2.0299 -0.7141 1.1839 22 6 1.8073 -0.3620 2.4657 23 8 1.1474 0.6238 2.7179 24 6 2.3783 -1.1933 3.5855 25 6 1.9803 -0.5804 4.9297 26 6 2.5595 -1.4248 6.0666 27 7 2.1779 -0.8360 7.3572 28 6 2.5098 -1.7397 8.4668 29 6 2.8069 0.4785 7.5427 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 2.3597 -0.0450 -2.0191 34 1 1.3066 -1.4406 -1.6225 35 1 2.8736 -3.4487 -1.2762 36 1 5.6274 -2.4383 -1.5656 37 1 5.0593 -3.4469 -0.2134 38 1 7.0559 -4.7225 -1.4978 39 1 9.6102 -6.8151 -1.9844 40 1 3.6655 -2.0412 1.3933 41 1 2.1805 -2.7722 0.7134 42 1 3.4650 -1.2159 3.5036 43 1 1.9877 -2.2088 3.5197 44 1 0.8936 -0.5581 5.0114 45 1 2.3706 0.4352 4.9958 46 1 2.1690 -2.4402 6.0004 47 1 3.6463 -1.4475 5.9851 48 1 3.5832 -1.9288 8.4727 49 1 2.2173 -1.2792 9.4105 50 1 1.9756 -2.6814 8.3407 51 1 2.4886 1.1494 6.7449 52 1 2.5079 0.8916 8.5061 53 1 3.8911 0.3697 7.5152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486121295.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:12 Heat of formation + Delta-G solvation = -94.006487 kcal Electronic energy + Delta-G solvation = -29559.296806 eV Core-core repulsion = 25464.550871 eV Total energy + Delta-G solvation = -4094.745935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.38787 -40.12995 -39.11561 -38.42193 -36.22439 -35.56787 -34.39450 -33.23872 -32.70447 -31.09269 -28.57648 -28.39837 -27.86330 -26.77155 -25.73581 -24.53098 -22.72456 -21.96612 -21.56101 -21.03719 -19.92099 -19.86563 -18.20821 -17.72630 -17.61246 -17.02658 -16.64196 -16.46882 -16.28523 -15.93946 -15.88322 -15.61165 -15.42173 -15.22991 -14.95466 -14.72080 -14.26145 -14.17035 -14.00028 -13.57946 -13.47328 -13.40731 -13.34962 -13.27578 -13.11242 -12.93010 -12.82420 -12.78732 -12.61311 -12.42654 -12.40366 -12.25957 -12.21198 -12.11804 -11.90853 -11.67043 -11.58237 -11.47487 -10.85060 -10.31249 -9.98638 -9.73247 -9.32513 -9.31086 -8.44489 -5.92576 1.41384 1.43809 1.53939 1.61011 1.90060 2.09326 2.30909 2.86936 3.02339 3.23431 3.39336 3.49780 3.72139 3.81453 3.94593 3.99910 4.07502 4.13794 4.23784 4.24686 4.35283 4.36509 4.41396 4.47653 4.49014 4.50393 4.58689 4.62545 4.64736 4.68690 4.70828 4.74395 4.77059 4.79290 4.96681 5.00174 5.01191 5.06938 5.14074 5.15472 5.28210 5.32031 5.43173 5.43596 5.91071 6.06118 6.09048 6.11633 6.37517 6.50610 6.63014 7.14329 7.15619 7.60095 8.15394 8.72431 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009946 B = 0.002090 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.537412 B =13394.359386 C =15783.938508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.110 4.110 5 C 0.082 3.918 6 H 0.105 0.895 7 N -0.664 5.664 8 C 0.064 3.936 9 C 0.437 3.563 10 O -0.624 6.624 11 N -0.573 5.573 12 C -0.332 4.332 13 H 0.079 0.921 14 C -0.013 4.013 15 N -0.920 5.920 16 Si 0.990 3.010 17 H -0.273 1.273 18 H -0.272 1.272 19 H -0.272 1.272 20 C 0.069 3.931 21 N -0.611 5.611 22 C 0.524 3.476 23 O -0.579 6.579 24 C -0.130 4.130 25 C -0.091 4.091 26 C 0.057 3.943 27 N -0.567 5.567 28 C 0.024 3.976 29 C 0.021 3.979 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.349 0.651 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.042 0.958 48 H 0.028 0.972 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.065 0.935 52 H 0.074 0.926 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.377 12.573 16.603 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.029 4.029 6 H 0.123 0.877 7 N -0.296 5.296 8 C -0.068 4.068 9 C 0.225 3.775 10 O -0.510 6.510 11 N -0.211 5.211 12 C -0.462 4.462 13 H 0.097 0.903 14 C -0.213 4.213 15 N -0.561 5.561 16 Si 0.814 3.186 17 H -0.199 1.199 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.056 4.056 21 N -0.345 5.345 22 C 0.314 3.686 23 O -0.459 6.459 24 C -0.170 4.170 25 C -0.130 4.130 26 C -0.071 4.071 27 N -0.291 5.291 28 C -0.124 4.124 29 C -0.127 4.127 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.083 0.917 52 H 0.093 0.907 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -10.459 13.155 15.812 23.075 hybrid contribution 1.336 -1.052 0.557 1.789 sum -9.123 12.103 16.369 22.308 Atomic orbital electron populations 1.22054 0.94693 1.02069 1.02489 1.21630 0.94711 0.96334 0.84418 0.91032 1.22685 0.97036 0.99259 0.95832 1.22802 0.99038 0.92120 0.88951 0.87731 1.60093 1.02846 1.08384 1.58244 1.21603 0.92490 0.94578 0.98127 1.20929 0.82748 0.87511 0.86320 1.90506 1.44828 1.69342 1.46365 1.41927 1.12696 1.25054 1.41395 1.19610 0.98911 1.04089 1.23589 0.90336 1.25995 0.94660 1.02081 0.98528 1.69661 1.04583 1.42050 1.39761 0.85028 0.77557 0.77681 0.78338 1.19877 1.19665 1.19684 1.23289 0.96034 0.88523 0.97708 1.48603 1.52476 1.28420 1.05021 1.20882 0.79603 0.85070 0.83008 1.90674 1.41942 1.29499 1.83789 1.21643 1.03351 1.00266 0.91757 1.21203 1.01212 0.98944 0.91600 1.22140 0.98208 0.98567 0.88169 1.61958 1.59860 1.04340 1.02921 1.22419 0.99090 0.97015 0.93891 1.22448 0.96659 0.90851 1.02768 0.93472 0.90189 0.92623 0.88756 0.90117 0.83077 0.87609 0.90685 0.76905 0.91365 0.88614 0.90665 0.87083 0.87214 0.92368 0.92398 0.89872 0.94025 0.95322 0.90729 0.90882 0.91663 0.90724 0.95276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.11 71.98 0.66 -2.34 16 2 C 0.13 2.51 3.46 45.35 0.16 2.67 16 3 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.11 -1.94 6.18 31.78 0.20 -1.74 16 5 C 0.08 1.52 3.32 46.31 0.15 1.67 16 6 H 0.10 1.80 7.92 -2.38 -0.02 1.78 16 7 N -0.66 -17.34 6.00 -488.40 -2.93 -20.27 16 8 C 0.06 1.86 6.04 85.56 0.52 2.38 16 9 C 0.44 19.24 7.82 87.66 0.69 19.93 16 10 O -0.62 -32.67 15.78 -3.07 -0.05 -32.72 16 11 N -0.57 -27.81 5.29 -306.98 -1.62 -29.43 16 12 C -0.33 -18.22 9.68 84.04 0.81 -17.41 16 13 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.92 -48.12 13.05 21.66 0.28 -47.83 16 16 Si 0.99 41.84 29.55 68.60 2.03 43.86 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 C 0.07 1.11 6.27 86.86 0.54 1.65 16 21 N -0.61 -11.65 3.06 -788.05 -2.41 -14.07 16 22 C 0.52 11.36 7.64 87.66 0.67 12.03 16 23 O -0.58 -16.96 15.03 -3.03 -0.05 -17.01 16 24 C -0.13 -1.93 4.71 29.85 0.14 -1.79 16 25 C -0.09 -1.55 4.43 30.60 0.14 -1.41 16 26 C 0.06 0.81 4.96 86.31 0.43 1.24 16 27 N -0.57 -8.88 5.02 -948.84 -4.76 -13.64 16 28 C 0.02 0.29 9.57 127.69 1.22 1.51 16 29 C 0.02 0.29 9.32 127.69 1.19 1.48 16 30 H 0.05 1.12 6.89 -2.39 -0.02 1.10 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.52 7.85 -2.38 -0.02 1.50 16 35 H 0.35 9.63 8.01 -89.69 -0.72 8.91 16 36 H 0.11 2.76 8.09 -2.39 -0.02 2.75 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.40 18.15 7.90 -92.70 -0.73 17.42 16 39 H 0.28 13.65 8.31 -92.70 -0.77 12.88 16 40 H 0.10 1.21 7.48 -2.39 -0.02 1.20 16 41 H 0.08 1.21 7.81 -2.39 -0.02 1.19 16 42 H 0.11 1.25 7.85 -2.39 -0.02 1.23 16 43 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 45 H 0.06 1.13 6.51 -2.39 -0.02 1.11 16 46 H 0.08 1.05 8.06 -2.39 -0.02 1.03 16 47 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 48 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 50 H 0.07 0.80 8.12 -2.39 -0.02 0.79 16 51 H 0.06 1.01 6.47 -2.39 -0.02 1.00 16 52 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 53 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -70.12 424.11 -2.09 -72.21 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.55 Total: 39.22 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 7.98 Total: 19.67 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -11.45 Total: -125.24 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.09 Total: -49.73 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -70.12 -2.09 -72.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486121295.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.792 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds