Wall clock time and date at job start Sat Apr 11 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46771 * 2 1 4 4 C 1.52999 * 109.47050 * 239.99970 * 2 1 3 5 5 N 1.46497 * 109.46928 * 184.99900 * 4 2 1 6 6 C 1.34784 * 120.00008 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99529 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99886 * 180.02562 * 6 5 4 9 9 C 1.53009 * 109.46949 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47025 * 185.45292 * 9 8 6 11 11 H 1.09007 * 109.91040 * 53.42937 * 10 9 8 12 12 C 1.53996 * 109.91688 * 174.52853 * 10 9 8 13 13 C 1.54600 * 105.13993 * 120.77507 * 12 10 9 14 14 C 1.54942 * 102.92010 * 21.95958 * 13 12 10 15 15 N 1.47906 * 109.91837 * 292.32464 * 10 9 8 16 16 C 1.46897 * 110.99720 * 94.60820 * 15 10 9 17 17 N 1.46896 * 109.46944 * 119.99994 * 2 1 3 18 18 C 1.46894 * 111.00381 * 275.00017 * 17 2 1 19 19 C 1.50700 * 109.47525 * 180.02562 * 18 17 2 20 20 O 1.21291 * 119.99604 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00045 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99688 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99875 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99733 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99782 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00232 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47208 * 89.99671 * 26 24 22 28 28 H 1.48494 * 109.47444 * 209.99854 * 26 24 22 29 29 H 1.48502 * 109.46866 * 330.00040 * 26 24 22 30 30 H 1.08998 * 109.47104 * 59.99766 * 1 2 3 31 31 H 1.09001 * 109.47426 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47229 * 299.99958 * 1 2 3 33 33 H 1.09004 * 109.47092 * 65.00325 * 4 2 1 34 34 H 1.08989 * 109.47654 * 305.00279 * 4 2 1 35 35 H 0.96998 * 120.00501 * 359.97438 * 5 4 2 36 36 H 1.08995 * 109.47784 * 59.99468 * 8 6 5 37 37 H 1.09004 * 109.47152 * 299.99157 * 8 6 5 38 38 H 1.08994 * 109.47260 * 65.45248 * 9 8 6 39 39 H 1.08995 * 109.46741 * 305.45303 * 9 8 6 40 40 H 1.08999 * 110.31020 * 239.69258 * 12 10 9 41 41 H 1.08998 * 110.30776 * 1.86262 * 12 10 9 42 42 H 1.08994 * 110.72155 * 140.31534 * 13 12 10 43 43 H 1.08997 * 110.72343 * 263.60615 * 13 12 10 44 44 H 1.09000 * 110.66745 * 81.01945 * 14 13 12 45 45 H 1.08996 * 110.66537 * 203.98225 * 14 13 12 46 46 H 1.08994 * 109.47366 * 65.06241 * 16 15 10 47 47 H 1.09004 * 109.47080 * 185.06548 * 16 15 10 48 48 H 1.08999 * 109.47360 * 305.05861 * 16 15 10 49 49 H 1.00905 * 111.00139 * 38.95913 * 17 2 1 50 50 H 1.09002 * 109.47371 * 300.00421 * 18 17 2 51 51 H 1.09001 * 109.47033 * 60.00336 * 18 17 2 52 52 H 0.96998 * 120.00333 * 359.97438 * 21 19 18 53 53 H 0.97004 * 119.99634 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1731 -1.4283 -2.1912 7 8 3.5700 -1.8832 -3.1399 8 6 5.6749 -1.5369 -2.1305 9 6 6.1850 -2.2580 -3.3799 10 6 7.6923 -2.4892 -3.2557 11 1 7.9137 -2.9985 -2.3177 12 6 8.1930 -3.3337 -4.4420 13 6 9.2539 -2.4550 -5.1438 14 6 9.6817 -1.4699 -4.0270 15 7 8.4064 -1.1949 -3.3070 16 6 8.6611 -0.6803 -1.9549 17 7 2.0196 -0.6925 1.1994 18 6 2.0824 0.2225 2.3469 19 6 2.5884 -0.5216 3.5557 20 8 2.8696 -1.6983 3.4696 21 7 2.7286 0.1205 4.7324 22 6 3.1894 -0.5565 5.8320 23 1 3.4405 -1.6041 5.7551 24 6 3.3344 0.1056 7.0450 25 7 3.7756 -0.5433 8.0991 26 14 2.9007 1.9177 7.1777 27 1 1.4714 2.0583 7.5553 28 1 3.7515 2.5558 8.2141 29 1 3.1344 2.5797 5.8691 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7517 -0.1583 -2.1370 34 1 1.6054 -1.7197 -1.2952 35 1 3.9824 -0.4621 -0.4320 36 1 5.9630 -2.1003 -1.2431 37 1 6.1098 -0.5384 -2.0840 38 1 5.9823 -1.6477 -4.2599 39 1 5.6772 -3.2174 -3.4783 40 1 8.6448 -4.2588 -4.0839 41 1 7.3715 -3.5523 -5.1242 42 1 10.1004 -3.0592 -5.4702 43 1 8.8149 -1.9179 -5.9845 44 1 10.4076 -1.9357 -3.3605 45 1 10.0879 -0.5543 -4.4567 46 1 9.3448 -1.3504 -1.4338 47 1 9.1059 0.3126 -2.0218 48 1 7.7214 -0.6210 -1.4057 49 1 1.4495 -1.4980 1.4100 50 1 2.7588 1.0462 2.1183 51 1 1.0870 0.6162 2.5525 52 1 2.5041 1.0616 4.8011 53 1 3.8772 -0.0810 8.9458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491487262.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:28 Heat of formation + Delta-G solvation = -101.437248 kcal Electronic energy + Delta-G solvation = -29607.181119 eV Core-core repulsion = 25512.112963 eV Total energy + Delta-G solvation = -4095.068157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.89380 -40.32016 -39.87791 -38.15024 -35.99727 -34.96294 -34.23274 -33.72844 -33.10008 -31.95063 -29.54254 -28.07650 -27.19589 -26.52609 -25.44634 -24.01987 -22.05854 -21.97308 -21.27239 -21.03246 -20.96535 -20.27591 -18.04926 -17.65914 -17.25706 -17.14772 -16.74568 -16.57580 -16.46136 -16.21087 -16.13371 -15.49947 -15.32930 -14.93643 -14.61954 -14.55574 -14.49902 -14.18316 -14.04459 -13.86224 -13.70157 -13.48677 -13.40608 -13.20374 -13.13619 -13.07383 -12.78028 -12.50813 -12.48980 -12.39668 -12.21507 -12.04710 -11.97264 -11.87873 -11.72885 -11.54771 -11.49357 -11.41206 -10.76916 -10.41259 -10.23100 -9.93536 -9.39090 -9.33582 -8.39851 -6.00610 1.31274 1.36864 1.45858 1.73896 1.99085 2.24307 2.36013 2.73304 3.05587 3.17100 3.41275 3.66291 3.74217 3.87870 3.94158 4.06803 4.09259 4.17179 4.23015 4.23629 4.34866 4.43859 4.46258 4.47671 4.58079 4.59015 4.62264 4.65166 4.67675 4.74328 4.84877 4.89506 4.91485 4.96431 5.00581 5.02169 5.08222 5.13688 5.22145 5.27453 5.28945 5.39342 5.54226 5.59491 5.92332 5.96617 6.05889 6.12101 6.35007 6.61422 6.68950 6.90499 7.36005 7.42438 7.99585 8.77792 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.002174 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.565952 B =12877.447131 C =14754.113559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 H 0.105 0.895 4 C 0.134 3.866 5 N -0.709 5.709 6 C 0.506 3.494 7 O -0.592 6.592 8 C -0.135 4.135 9 C -0.076 4.076 10 C 0.064 3.936 11 H 0.052 0.948 12 C -0.130 4.130 13 C -0.120 4.120 14 C 0.031 3.969 15 N -0.528 5.528 16 C 0.005 3.995 17 N -0.678 5.678 18 C 0.063 3.937 19 C 0.449 3.551 20 O -0.614 6.614 21 N -0.592 5.592 22 C -0.326 4.326 23 H 0.054 0.946 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.965 3.035 27 H -0.259 1.259 28 H -0.278 1.278 29 H -0.228 1.228 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.413 0.587 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.086 0.914 46 H 0.028 0.972 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.345 0.655 50 H 0.119 0.881 51 H 0.078 0.922 52 H 0.390 0.610 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 7.005 -24.829 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 H 0.123 0.877 4 C 0.009 3.991 5 N -0.360 5.360 6 C 0.294 3.706 7 O -0.473 6.473 8 C -0.175 4.175 9 C -0.115 4.115 10 C -0.045 4.045 11 H 0.070 0.930 12 C -0.168 4.168 13 C -0.158 4.158 14 C -0.096 4.096 15 N -0.252 5.252 16 C -0.143 4.143 17 N -0.310 5.310 18 C -0.070 4.070 19 C 0.237 3.763 20 O -0.499 6.499 21 N -0.233 5.233 22 C -0.455 4.455 23 H 0.072 0.928 24 C -0.216 4.216 25 N -0.577 5.577 26 Si 0.785 3.215 27 H -0.183 1.183 28 H -0.203 1.203 29 H -0.151 1.151 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.250 0.750 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.164 0.836 50 H 0.137 0.863 51 H 0.096 0.904 52 H 0.225 0.775 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.802 6.380 -25.741 26.951 hybrid contribution -0.404 0.005 1.981 2.022 sum 4.399 6.385 -23.760 24.993 Atomic orbital electron populations 1.22397 0.94947 1.02705 1.03626 1.21853 0.94300 0.98541 0.88415 0.87709 1.21333 0.80219 1.00158 0.97399 1.45877 1.07940 1.58882 1.23279 1.21184 0.91219 0.76580 0.81586 1.90646 1.71531 1.49891 1.35266 1.21806 0.90123 1.04465 1.01065 1.21221 0.93457 1.00044 0.96779 1.22445 0.93960 0.89718 0.98366 0.93005 1.22472 0.99347 0.98260 0.96694 1.22471 0.98605 0.97055 0.97663 1.23389 0.90875 0.99667 0.95709 1.64827 1.18143 1.25320 1.16930 1.22742 1.01781 1.00575 0.89250 1.60138 1.58657 1.09166 1.03026 1.21681 1.02006 0.95357 0.87915 1.21045 0.82405 0.87939 0.84938 1.90561 1.55274 1.18774 1.85249 1.42038 1.60653 1.11836 1.08821 1.18986 1.42263 0.96006 0.88290 0.92782 1.26139 0.96506 1.05031 0.93932 1.69814 1.46452 1.39610 1.01807 0.85361 0.79251 0.76534 0.80341 1.18337 1.20292 1.15074 0.90109 0.92686 0.91522 0.90691 0.93455 0.75043 0.88602 0.87007 0.91933 0.92212 0.90722 0.90893 0.89673 0.90958 0.93465 0.89516 0.95350 0.90572 0.90518 0.83630 0.86288 0.90442 0.77468 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.16 71.98 0.66 -1.95 16 2 C 0.08 1.37 2.75 44.92 0.12 1.49 16 3 H 0.10 1.46 7.80 -2.39 -0.02 1.44 16 4 C 0.13 2.78 5.37 86.38 0.46 3.24 16 5 N -0.71 -15.78 5.39 -463.08 -2.50 -18.28 16 6 C 0.51 12.90 7.83 87.65 0.69 13.58 16 7 O -0.59 -19.39 15.91 -3.02 -0.05 -19.44 16 8 C -0.14 -2.67 4.47 29.85 0.13 -2.54 16 9 C -0.08 -1.56 4.02 30.60 0.12 -1.44 16 10 C 0.06 1.10 2.58 45.06 0.12 1.21 16 11 H 0.05 0.92 7.77 -2.38 -0.02 0.90 16 12 C -0.13 -1.90 6.57 31.48 0.21 -1.69 16 13 C -0.12 -1.50 7.06 31.80 0.22 -1.27 16 14 C 0.03 0.42 6.58 86.56 0.57 0.99 16 15 N -0.53 -8.81 5.09 -882.73 -4.49 -13.30 16 16 C 0.00 0.07 9.12 127.69 1.16 1.24 16 17 N -0.68 -16.90 5.31 -495.60 -2.63 -19.54 16 18 C 0.06 1.63 5.96 85.56 0.51 2.14 16 19 C 0.45 18.82 7.82 87.66 0.69 19.51 16 20 O -0.61 -32.46 15.78 -3.06 -0.05 -32.51 16 21 N -0.59 -26.43 5.09 -306.98 -1.56 -27.99 16 22 C -0.33 -18.59 10.16 84.04 0.85 -17.74 16 23 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 24 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 25 N -0.94 -55.72 13.96 21.66 0.30 -55.42 16 26 Si 0.97 37.52 27.74 68.60 1.90 39.42 16 27 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 28 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 29 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 32 H 0.07 0.94 7.45 -2.39 -0.02 0.93 16 33 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.41 8.49 8.14 -92.71 -0.75 7.73 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 37 H 0.11 1.91 6.24 -2.38 -0.01 1.89 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.36 7.94 -2.39 -0.02 1.34 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.11 7.69 -2.39 -0.02 1.09 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 0.62 7.90 -2.39 -0.02 0.60 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.03 0.43 7.96 -2.39 -0.02 0.41 16 47 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.14 5.23 -2.39 -0.01 1.12 16 49 H 0.34 9.93 8.17 -89.69 -0.73 9.19 16 50 H 0.12 2.44 8.06 -2.39 -0.02 2.42 16 51 H 0.08 1.62 7.44 -2.39 -0.02 1.60 16 52 H 0.39 14.20 5.76 -92.71 -0.53 13.66 16 53 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -78.38 418.75 -3.25 -81.62 By element: Atomic # 1 Polarization: 50.30 SS G_CDS: -1.16 Total: 49.14 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.99 Total: 16.28 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -10.88 Total: -134.52 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.10 Total: -51.95 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 1.90 Total: 39.42 kcal Total: -78.38 -3.25 -81.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491487262.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.814 kcal (2) G-P(sol) polarization free energy of solvation -78.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds