Wall clock time and date at job start Sat Apr 11 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.46919 * 2 1 4 4 C 1.52996 * 109.46923 * 120.00505 * 2 1 3 5 5 N 1.46500 * 109.46982 * 175.00173 * 4 2 1 6 6 C 1.34780 * 120.00452 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99537 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00085 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47023 * 180.02562 * 8 6 5 10 10 N 1.46897 * 109.47166 * 180.02562 * 9 8 6 11 11 C 1.46854 * 110.99665 * 170.00131 * 10 9 8 12 12 C 1.53037 * 109.51886 * 185.84309 * 11 10 9 13 13 C 1.53126 * 109.27801 * 300.81620 * 12 11 10 14 14 C 1.53124 * 109.15878 * 57.65645 * 13 12 11 15 15 C 1.46844 * 111.00090 * 294.20807 * 10 9 8 16 16 N 1.46900 * 109.46878 * 240.00500 * 2 1 3 17 17 C 1.46902 * 111.00393 * 84.99976 * 16 2 1 18 18 C 1.50698 * 109.47264 * 179.97438 * 17 16 2 19 19 O 1.21290 * 119.99984 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00059 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00185 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00056 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99668 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00150 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46844 * 89.99928 * 25 23 21 27 27 H 1.48493 * 109.47485 * 210.00185 * 25 23 21 28 28 H 1.48499 * 109.47011 * 330.00283 * 25 23 21 29 29 H 1.09003 * 109.46934 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47387 * 299.99384 * 1 2 3 31 31 H 1.08998 * 109.47403 * 59.99949 * 1 2 3 32 32 H 1.08998 * 109.47813 * 55.00218 * 4 2 1 33 33 H 1.08994 * 109.47277 * 294.99484 * 4 2 1 34 34 H 0.97011 * 119.99882 * 359.97438 * 5 4 2 35 35 H 1.08995 * 109.47181 * 60.00369 * 8 6 5 36 36 H 1.09003 * 109.47281 * 299.99639 * 8 6 5 37 37 H 1.09004 * 109.46918 * 59.99817 * 9 8 6 38 38 H 1.09003 * 109.46728 * 300.00390 * 9 8 6 39 39 H 1.08994 * 109.46310 * 65.82535 * 11 10 9 40 40 H 1.09004 * 109.45830 * 305.85222 * 11 10 9 41 41 H 1.09000 * 109.50480 * 180.88135 * 12 11 10 42 42 H 1.08992 * 109.50737 * 60.75564 * 12 11 10 43 43 H 1.08998 * 109.52297 * 177.56592 * 13 12 11 44 44 H 1.08999 * 109.51925 * 297.75795 * 13 12 11 45 45 H 1.08999 * 109.50059 * 62.28737 * 14 13 12 46 46 H 1.08993 * 109.49981 * 182.40384 * 14 13 12 47 47 H 1.09002 * 109.46133 * 294.17882 * 15 10 9 48 48 H 1.09002 * 109.46211 * 54.14407 * 15 10 9 49 49 H 1.00899 * 111.00535 * 321.04101 * 16 2 1 50 50 H 1.09001 * 109.47030 * 299.99880 * 17 16 2 51 51 H 1.08998 * 109.46679 * 59.99379 * 17 16 2 52 52 H 0.97001 * 119.99477 * 0.02562 * 20 18 17 53 53 H 0.97010 * 119.99549 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1731 -1.4284 2.1910 7 8 3.5700 -1.8835 3.1398 8 6 5.6750 -1.5370 2.1304 9 6 6.1851 -2.2583 3.3796 10 7 7.6491 -2.3636 3.3208 11 6 8.1947 -2.8333 4.6007 12 6 9.7237 -2.7920 4.5507 13 6 10.2164 -3.6827 3.4068 14 6 9.5955 -3.2019 2.0923 15 6 8.0702 -3.2313 2.2135 16 7 2.0196 -0.6924 -1.1995 17 6 2.0824 0.2227 -2.3470 18 6 2.5884 -0.5213 -3.5558 19 8 2.8687 -1.6983 -3.4701 20 7 2.7286 0.1208 -4.7325 21 6 3.1884 -0.5562 -5.8323 22 1 3.4387 -1.6039 -5.7558 23 6 3.3333 0.1060 -7.0453 24 7 3.0301 1.3813 -7.1380 25 14 3.9605 -0.8163 -8.5438 26 1 2.8119 -1.3992 -9.2828 27 1 4.6952 0.1213 -9.4305 28 1 4.8730 -1.9042 -8.1093 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1585 2.1369 34 1 3.9824 -0.4627 0.4315 35 1 6.1098 -0.5386 2.0838 36 1 5.9630 -2.1006 1.2429 37 1 5.7501 -3.2567 3.4257 38 1 5.8970 -1.6951 4.2673 39 1 7.8648 -3.8561 4.7826 40 1 7.8400 -2.1888 5.4051 41 1 10.1286 -3.1554 5.4952 42 1 10.0547 -1.7673 4.3825 43 1 11.3027 -3.6223 3.3401 44 1 9.9188 -4.7143 3.5944 45 1 9.9245 -2.1836 1.8854 46 1 9.9088 -3.8582 1.2805 47 1 7.7408 -4.2523 2.4068 48 1 7.6251 -2.8760 1.2841 49 1 1.4496 -1.4979 -1.4102 50 1 1.0870 0.6164 -2.5526 51 1 2.7588 1.0463 -2.1182 52 1 2.5040 1.0620 -4.8010 53 1 3.1310 1.8435 -7.9849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491684504.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:55 Heat of formation + Delta-G solvation = -112.900776 kcal Electronic energy + Delta-G solvation = -29388.268487 eV Core-core repulsion = 25292.703234 eV Total energy + Delta-G solvation = -4095.565253 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.89071 -40.17771 -39.73881 -38.13194 -35.95786 -35.16514 -34.96191 -33.25908 -32.16794 -31.78645 -31.02172 -27.95026 -27.45232 -25.79553 -25.34720 -23.98504 -22.84518 -21.97874 -21.10531 -20.92407 -20.61212 -19.90001 -18.26838 -17.77457 -17.20480 -16.90710 -16.65807 -16.52607 -16.40042 -16.18221 -15.84142 -15.60684 -15.31706 -15.19019 -15.04787 -14.62013 -14.44178 -14.30767 -14.11585 -13.74864 -13.67459 -13.53107 -13.39254 -13.29795 -13.09310 -13.04357 -12.80350 -12.70560 -12.49375 -12.39205 -12.12380 -12.11890 -12.11260 -11.88778 -11.58129 -11.48901 -11.27352 -11.18399 -10.87660 -10.32069 -9.99232 -9.96097 -9.34055 -9.33412 -8.45342 -5.93373 1.38559 1.42820 1.54928 1.69310 2.08630 2.24182 2.30140 2.89358 3.00667 3.22571 3.54847 3.80987 3.86622 3.87509 3.96561 4.00818 4.08671 4.14855 4.22477 4.33729 4.34412 4.37068 4.48083 4.50661 4.53433 4.63155 4.65398 4.67004 4.67684 4.78699 4.81240 4.88733 4.89969 4.96118 4.98672 5.00910 5.07694 5.10603 5.24651 5.25846 5.30217 5.42692 5.48793 5.55728 5.90516 6.06316 6.11418 6.13198 6.36836 6.62285 6.65526 7.15043 7.31537 7.59497 8.14905 8.71837 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008950 B = 0.002178 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.669586 B =12850.079585 C =15585.503628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.101 0.899 4 C 0.135 3.865 5 N -0.707 5.707 6 C 0.511 3.489 7 O -0.592 6.592 8 C -0.130 4.130 9 C 0.080 3.920 10 N -0.540 5.540 11 C 0.052 3.948 12 C -0.113 4.113 13 C -0.122 4.122 14 C -0.116 4.116 15 C 0.046 3.954 16 N -0.673 5.673 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.414 0.586 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.025 0.975 48 H 0.077 0.923 49 H 0.344 0.656 50 H 0.067 0.933 51 H 0.110 0.890 52 H 0.396 0.604 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.945 -0.783 21.125 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.119 0.881 4 C 0.011 3.989 5 N -0.358 5.358 6 C 0.298 3.702 7 O -0.474 6.474 8 C -0.170 4.170 9 C -0.048 4.048 10 N -0.265 5.265 11 C -0.075 4.075 12 C -0.150 4.150 13 C -0.159 4.159 14 C -0.154 4.154 15 C -0.082 4.082 16 N -0.305 5.305 17 C -0.066 4.066 18 C 0.226 3.774 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.250 0.750 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.044 0.956 48 H 0.095 0.905 49 H 0.163 0.837 50 H 0.085 0.915 51 H 0.128 0.872 52 H 0.230 0.770 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.560 -1.190 21.748 23.055 hybrid contribution -1.182 -0.628 -1.459 1.980 sum 6.379 -1.819 20.289 21.346 Atomic orbital electron populations 1.22389 0.95004 1.02737 1.03485 1.21859 0.94294 0.98492 0.88646 0.88102 1.21330 0.80083 1.00234 0.97294 1.45859 1.07992 1.58688 1.23226 1.20980 0.90874 0.76682 0.81669 1.90657 1.71535 1.49963 1.35253 1.21583 0.90105 1.04840 1.00442 1.21642 0.86784 0.98628 0.97791 1.61955 1.08830 1.51104 1.04637 1.22153 0.96259 0.98193 0.90919 1.21574 0.93554 1.00831 0.99069 1.21599 1.00750 0.98941 0.94650 1.21583 0.93470 1.02240 0.98062 1.22233 0.97077 0.94212 0.94657 1.60152 1.58425 1.09049 1.02899 1.21572 1.01283 0.95295 0.88450 1.20934 0.83311 0.87996 0.85183 1.90506 1.56609 1.18377 1.85478 1.41934 1.58373 1.12628 1.08196 1.19623 1.41992 0.95883 0.88565 0.90439 1.25995 0.97363 0.96599 1.01330 1.69668 1.48777 1.09580 1.28036 0.84970 0.78402 0.77865 0.77378 1.19806 1.19615 1.19825 0.92485 0.90001 0.91961 0.93224 0.90483 0.74963 0.86451 0.88281 0.95902 0.90565 0.95494 0.90359 0.90237 0.91243 0.90719 0.92531 0.91219 0.90902 0.95648 0.90481 0.83675 0.91542 0.87244 0.76964 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 9.16 71.98 0.66 -2.29 16 2 C 0.08 1.49 2.75 44.92 0.12 1.61 16 3 H 0.10 1.68 7.80 -2.39 -0.02 1.66 16 4 C 0.14 2.91 5.37 86.38 0.46 3.37 16 5 N -0.71 -16.06 5.39 -463.07 -2.50 -18.56 16 6 C 0.51 12.92 7.83 87.66 0.69 13.61 16 7 O -0.59 -19.15 15.98 -3.04 -0.05 -19.19 16 8 C -0.13 -2.59 5.63 29.85 0.17 -2.43 16 9 C 0.08 1.69 4.25 86.31 0.37 2.06 16 10 N -0.54 -10.14 4.66 -896.34 -4.17 -14.31 16 11 C 0.05 0.85 5.46 86.32 0.47 1.33 16 12 C -0.11 -1.48 6.09 30.65 0.19 -1.29 16 13 C -0.12 -1.60 6.00 30.68 0.18 -1.42 16 14 C -0.12 -1.76 6.09 30.65 0.19 -1.57 16 15 C 0.05 0.84 5.29 86.33 0.46 1.29 16 16 N -0.67 -18.17 5.31 -495.59 -2.63 -20.80 16 17 C 0.07 1.98 5.97 85.56 0.51 2.49 16 18 C 0.44 19.53 7.82 87.66 0.69 20.21 16 19 O -0.62 -32.97 15.78 -3.06 -0.05 -33.02 16 20 N -0.57 -28.16 5.29 -306.99 -1.62 -29.78 16 21 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 25 Si 0.99 42.22 29.55 68.60 2.03 44.25 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.06 7.45 -2.39 -0.02 1.05 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 8.89 8.14 -92.70 -0.75 8.14 16 35 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 1.93 6.43 -2.39 -0.02 1.92 16 37 H 0.02 0.56 8.08 -2.39 -0.02 0.54 16 38 H 0.08 1.67 7.94 -2.39 -0.02 1.65 16 39 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 1.20 8.02 -2.39 -0.02 1.18 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.03 0.49 8.14 -2.39 -0.02 0.48 16 48 H 0.08 1.42 6.21 -2.39 -0.01 1.41 16 49 H 0.34 10.46 8.17 -89.69 -0.73 9.73 16 50 H 0.07 1.75 7.44 -2.39 -0.02 1.73 16 51 H 0.11 2.82 8.05 -2.39 -0.02 2.80 16 52 H 0.40 18.41 7.90 -92.71 -0.73 17.68 16 53 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 Total: -1.00 -68.70 422.16 -3.59 -72.28 By element: Atomic # 1 Polarization: 49.43 SS G_CDS: -1.30 Total: 48.13 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 6.43 Total: 19.25 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -10.64 Total: -131.70 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -0.10 Total: -52.21 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.70 -3.59 -72.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491684504.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.616 kcal (2) G-P(sol) polarization free energy of solvation -68.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds