Wall clock time and date at job start Sat Apr 11 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47371 * 2 1 4 4 C 1.53003 * 109.46897 * 120.00194 * 2 1 3 5 5 N 1.46904 * 109.46995 * 175.19707 * 4 2 1 6 6 C 1.46952 * 110.99733 * 198.22543 * 5 4 2 7 7 C 1.53047 * 109.36582 * 176.80971 * 6 5 4 8 8 N 1.46964 * 109.36335 * 58.40363 * 7 6 5 9 9 C 1.46899 * 110.99960 * 176.81534 * 8 7 6 10 10 C 1.46957 * 110.87847 * 300.68270 * 8 7 6 11 11 C 1.46957 * 110.99801 * 74.42795 * 5 4 2 12 12 N 1.46506 * 109.47248 * 239.99805 * 2 1 3 13 13 C 1.34774 * 119.99911 * 85.10121 * 12 2 1 14 14 O 1.21583 * 119.99840 * 0.02562 * 13 12 2 15 15 N 1.34781 * 119.99584 * 180.02562 * 13 12 2 16 16 C 1.47019 * 125.65222 * 359.97438 * 15 13 12 17 17 C 1.54319 * 107.27209 * 178.99167 * 16 15 13 18 18 C 1.55150 * 102.94364 * 337.80752 * 17 16 15 19 19 O 1.42905 * 111.00419 * 277.38703 * 18 17 16 20 20 C 1.50698 * 111.00654 * 153.57407 * 18 17 16 21 21 H 1.07999 * 120.00154 * 3.18115 * 20 18 17 22 22 C 1.37879 * 120.00241 * 182.89891 * 20 18 17 23 23 N 1.31519 * 119.99534 * 0.28242 * 22 20 18 24 24 Si 1.86799 * 120.00260 * 180.27368 * 22 20 18 25 25 H 1.48503 * 109.46830 * 60.00266 * 24 22 20 26 26 H 1.48491 * 109.47234 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47082 * 300.00834 * 24 22 20 28 28 C 1.47470 * 125.62436 * 179.97438 * 15 13 12 29 29 H 1.08995 * 109.47371 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47156 * 300.00503 * 1 2 3 31 31 H 1.09010 * 109.47022 * 59.99829 * 1 2 3 32 32 H 1.08999 * 109.46598 * 295.19312 * 4 2 1 33 33 H 1.08993 * 109.47574 * 55.19466 * 4 2 1 34 34 H 1.08995 * 109.49178 * 296.78189 * 6 5 4 35 35 H 1.09001 * 109.48824 * 56.84370 * 6 5 4 36 36 H 1.09003 * 109.48850 * 298.43795 * 7 6 5 37 37 H 1.08996 * 109.51145 * 178.37834 * 7 6 5 38 38 H 1.09005 * 109.46637 * 183.80018 * 9 8 7 39 39 H 1.08995 * 109.46895 * 303.79731 * 9 8 7 40 40 H 1.09003 * 109.47274 * 63.79866 * 9 8 7 41 41 H 1.09006 * 109.49148 * 299.35217 * 10 8 7 42 42 H 1.09002 * 109.50771 * 179.29876 * 10 8 7 43 43 H 1.08995 * 109.49155 * 303.15084 * 11 5 4 44 44 H 1.09003 * 109.49008 * 63.22185 * 11 5 4 45 45 H 0.96998 * 119.99605 * 265.11030 * 12 2 1 46 46 H 1.08997 * 109.88172 * 59.57250 * 16 15 13 47 47 H 1.09003 * 110.00889 * 298.48759 * 16 15 13 48 48 H 1.09003 * 110.72162 * 219.43783 * 17 16 15 49 49 H 1.09002 * 110.71671 * 96.16853 * 17 16 15 50 50 H 0.96692 * 114.00079 * 176.81940 * 19 18 17 51 51 H 0.97001 * 119.99104 * 179.97438 * 23 22 20 52 52 H 1.09004 * 110.34366 * 85.24002 * 28 15 13 53 53 H 1.08997 * 110.40572 * 322.90191 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5044 -0.8226 1.1927 6 6 3.9968 -1.8550 2.1152 7 6 5.5148 -1.9842 1.9687 8 7 6.1438 -0.6863 2.2511 9 6 7.6082 -0.7877 2.1945 10 6 5.6513 0.3461 1.3286 11 6 4.1333 0.4753 1.4750 12 7 2.0184 -0.6907 -1.1962 13 6 2.1490 -0.0179 -2.3566 14 8 1.8620 1.1624 -2.4107 15 7 2.5978 -0.6534 -3.4572 16 6 2.9796 -2.0712 -3.5321 17 6 3.4036 -2.3552 -4.9885 18 6 2.6992 -1.2235 -5.7825 19 8 1.3381 -1.5612 -6.0573 20 6 3.4433 -0.9130 -7.0556 21 1 4.3127 -1.4928 -7.3281 22 6 3.0107 0.1076 -7.8756 23 7 1.9519 0.8138 -7.5437 24 14 3.9285 0.4876 -9.4575 25 1 3.9155 -0.7090 -10.3369 26 1 3.2677 1.6209 -10.1532 27 1 5.3323 0.8530 -9.1398 28 6 2.7871 -0.0414 -4.7854 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.7485 -0.1601 2.1371 33 1 1.6081 -1.7211 1.2934 34 1 3.7530 -1.5736 3.1396 35 1 3.5261 -2.8091 1.8781 36 1 5.7571 -2.2921 0.9515 37 1 5.8864 -2.7290 2.6724 38 1 8.0496 0.1693 2.4731 39 1 7.9460 -1.5588 2.8867 40 1 7.9155 -1.0485 1.1817 41 1 5.8951 0.0647 0.3041 42 1 6.1220 1.3003 1.5654 43 1 3.7621 1.2201 0.7711 44 1 3.8910 0.7832 2.4922 45 1 2.2475 -1.6322 -1.1529 46 1 2.1295 -2.6987 -3.2645 47 1 3.8130 -2.2692 -2.8580 48 1 3.0455 -3.3330 -5.3108 49 1 4.4861 -2.2852 -5.0956 50 1 0.8434 -0.8641 -6.5091 51 1 1.6478 1.5320 -8.1204 52 1 3.7657 0.4348 -4.8473 53 1 1.9982 0.6835 -4.9858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645861585.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:43 Heat of formation + Delta-G solvation = -84.751776 kcal Electronic energy + Delta-G solvation = -31776.051113 eV Core-core repulsion = 27681.706493 eV Total energy + Delta-G solvation = -4094.344620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27682 -40.28730 -39.14401 -37.39949 -35.99838 -35.32094 -34.17928 -32.48868 -31.91003 -31.07874 -29.55939 -29.42125 -26.94936 -26.29265 -24.73392 -24.36313 -23.91586 -21.92805 -21.38770 -20.94989 -20.67183 -19.24190 -18.77043 -17.44960 -17.24681 -16.96467 -16.65847 -16.25318 -16.15972 -15.94904 -15.85304 -15.56168 -15.28779 -15.24642 -14.94722 -14.66848 -14.61737 -14.09822 -13.67233 -13.59587 -13.47830 -13.44803 -13.26945 -13.13432 -12.97678 -12.80933 -12.73900 -12.53910 -12.49510 -12.31476 -12.25696 -12.24174 -12.10918 -12.07823 -11.71898 -11.46327 -11.25256 -11.14046 -10.64000 -10.31134 -10.04646 -9.44342 -9.24265 -9.23498 -8.23884 -6.41265 1.43681 1.44033 1.52573 1.80298 2.28688 2.39051 2.82664 2.96661 3.02052 3.22927 3.76718 3.82916 3.88000 4.07319 4.12026 4.17114 4.20858 4.22408 4.32766 4.34544 4.37901 4.47005 4.51169 4.59838 4.61422 4.65018 4.67140 4.75814 4.78274 4.79450 4.83888 4.88900 4.98242 5.00537 5.05363 5.07629 5.07938 5.11807 5.29382 5.35566 5.42285 5.47448 5.70691 5.77349 5.93768 5.96002 6.06418 6.14522 6.17440 6.30729 6.65888 7.19881 7.30660 7.37579 7.72099 8.81325 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.002917 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.313125 B = 9595.769153 C =10546.478567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.055 0.945 4 C 0.059 3.941 5 N -0.548 5.548 6 C 0.061 3.939 7 C 0.055 3.945 8 N -0.551 5.551 9 C 0.025 3.975 10 C 0.060 3.940 11 C 0.063 3.937 12 N -0.707 5.707 13 C 0.712 3.288 14 O -0.650 6.650 15 N -0.635 5.635 16 C 0.114 3.886 17 C -0.110 4.110 18 C 0.234 3.766 19 O -0.588 6.588 20 C -0.558 4.558 21 H 0.069 0.931 22 C 0.025 3.975 23 N -0.917 5.917 24 Si 0.965 3.035 25 H -0.268 1.268 26 H -0.286 1.286 27 H -0.270 1.270 28 C 0.131 3.869 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.030 0.970 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.019 0.981 41 H 0.021 0.979 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.406 0.594 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.374 0.626 51 H 0.269 0.731 52 H 0.034 0.966 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -7.807 22.711 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.073 0.927 4 C -0.069 4.069 5 N -0.273 5.273 6 C -0.066 4.066 7 C -0.073 4.073 8 N -0.275 5.275 9 C -0.123 4.123 10 C -0.068 4.068 11 C -0.065 4.065 12 N -0.363 5.363 13 C 0.414 3.586 14 O -0.533 6.533 15 N -0.371 5.371 16 C -0.009 4.009 17 C -0.148 4.148 18 C 0.193 3.807 19 O -0.396 6.396 20 C -0.596 4.596 21 H 0.087 0.913 22 C -0.176 4.176 23 N -0.556 5.556 24 Si 0.790 3.210 25 H -0.193 1.193 26 H -0.211 1.211 27 H -0.195 1.195 28 C 0.007 3.993 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.048 0.952 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.242 0.758 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.224 0.776 51 H 0.079 0.921 52 H 0.053 0.947 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.026 -7.357 23.021 24.685 hybrid contribution 0.251 1.093 -1.661 2.004 sum 5.277 -6.264 21.360 22.876 Atomic orbital electron populations 1.22120 0.94670 1.02892 1.01905 1.20836 0.93697 0.96120 0.83403 0.92661 1.22366 0.87137 1.02228 0.95181 1.62021 1.05859 1.06666 1.52787 1.22205 0.94400 0.95671 0.94345 1.22238 0.94330 0.90842 0.99892 1.62249 1.07017 1.06896 1.51382 1.22390 0.86585 1.03231 1.00124 1.22085 0.94990 0.96029 0.93724 1.22056 0.93650 0.91309 0.99483 1.44758 1.70690 1.13660 1.07144 1.15752 0.78086 0.84159 0.80627 1.90822 1.60372 1.16835 1.85303 1.47824 1.68071 1.12056 1.09191 1.21994 0.99869 0.80921 0.98080 1.22583 1.00359 0.99173 0.92682 1.19833 0.80383 0.89548 0.90934 1.86063 1.25561 1.46704 1.81293 1.21804 1.13855 1.17298 1.06662 0.91255 1.25855 0.95572 0.94895 1.01260 1.69785 1.25112 1.21542 1.39161 0.85497 0.78698 0.77723 0.79050 1.19300 1.21139 1.19536 1.22588 0.98099 0.98030 0.80582 0.90851 0.89547 0.95359 0.91458 0.87954 0.93680 0.88434 0.95203 0.88607 0.90957 0.89927 0.96196 0.96088 0.89969 0.92117 0.93410 0.75834 0.91145 0.89864 0.89670 0.89556 0.77645 0.92141 0.94739 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.49 71.98 0.68 -2.88 16 2 C 0.17 4.05 2.56 44.99 0.12 4.17 16 3 H 0.06 1.70 6.43 -2.39 -0.02 1.68 16 4 C 0.06 0.95 4.55 86.30 0.39 1.35 16 5 N -0.55 -10.10 4.38 -895.73 -3.92 -14.02 16 6 C 0.06 0.86 5.57 86.31 0.48 1.35 16 7 C 0.06 0.85 5.62 86.31 0.49 1.33 16 8 N -0.55 -9.76 4.97 -921.91 -4.58 -14.34 16 9 C 0.02 0.36 9.60 127.69 1.23 1.59 16 10 C 0.06 1.25 5.62 86.31 0.49 1.73 16 11 C 0.06 1.31 5.43 86.31 0.47 1.78 16 12 N -0.71 -20.96 4.76 -457.81 -2.18 -23.14 16 13 C 0.71 29.87 8.46 179.05 1.51 31.39 16 14 O -0.65 -33.33 16.26 -3.98 -0.06 -33.40 16 15 N -0.63 -27.08 3.33 -829.68 -2.76 -29.84 16 16 C 0.11 3.83 6.15 86.73 0.53 4.36 16 17 C -0.11 -4.26 6.13 31.78 0.19 -4.06 16 18 C 0.23 11.57 0.88 -10.16 -0.01 11.56 16 19 O -0.59 -31.02 13.17 -148.98 -1.96 -32.98 16 20 C -0.56 -29.57 8.25 25.60 0.21 -29.36 16 21 H 0.07 3.53 7.78 -2.91 -0.02 3.50 16 22 C 0.02 1.33 5.29 84.65 0.45 1.78 16 23 N -0.92 -51.25 10.69 21.45 0.23 -51.02 16 24 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 C 0.13 6.71 5.51 86.84 0.48 7.19 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.92 8.02 -2.39 -0.02 0.90 16 33 H 0.10 1.23 7.87 -2.39 -0.02 1.21 16 34 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 1.04 8.01 -2.39 -0.02 1.02 16 36 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 1.12 8.13 -2.39 -0.02 1.10 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 39 H 0.08 0.95 8.13 -2.39 -0.02 0.93 16 40 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.52 6.81 -2.39 -0.02 1.51 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.41 10.06 7.59 -92.71 -0.70 9.36 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 49 H 0.09 3.12 8.03 -2.39 -0.02 3.11 16 50 H 0.37 20.88 7.24 -74.06 -0.54 20.34 16 51 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 52 H 0.03 1.85 8.03 -2.38 -0.02 1.83 16 53 H 0.04 2.27 7.48 -2.39 -0.02 2.25 16 Total: -1.00 -69.56 411.22 -5.85 -75.41 By element: Atomic # 1 Polarization: 45.96 SS G_CDS: -0.35 Total: 45.61 kcal Atomic # 6 Polarization: 25.57 SS G_CDS: 7.71 Total: 33.28 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -13.21 Total: -132.36 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -2.03 Total: -66.38 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -69.56 -5.85 -75.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645861585.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.341 kcal (2) G-P(sol) polarization free energy of solvation -69.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds