Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46878 * 2 1 4 4 C 1.52999 * 109.47315 * 120.00371 * 2 1 3 5 5 N 1.46902 * 109.47019 * 175.72964 * 4 2 1 6 6 C 1.46965 * 110.99935 * 75.85730 * 5 4 2 7 7 C 1.53047 * 109.38115 * 183.17646 * 6 5 4 8 8 N 1.46957 * 109.36494 * 301.63235 * 7 6 5 9 9 C 1.46902 * 110.99881 * 183.16717 * 8 7 6 10 10 C 1.46965 * 110.89888 * 59.28777 * 8 7 6 11 11 C 1.46958 * 111.00135 * 199.65481 * 5 4 2 12 12 N 1.46505 * 109.47252 * 240.00425 * 2 1 3 13 13 C 1.34782 * 119.99773 * 83.87357 * 12 2 1 14 14 O 1.21588 * 119.99950 * 359.97438 * 13 12 2 15 15 N 1.34769 * 119.99691 * 180.02562 * 13 12 2 16 16 C 1.47432 * 125.65093 * 359.68633 * 15 13 12 17 17 C 1.55129 * 104.72298 * 155.82149 * 16 15 13 18 18 C 1.55158 * 101.48557 * 37.29771 * 17 16 15 19 19 O 1.42901 * 110.72434 * 82.69486 * 18 17 16 20 20 C 1.50701 * 110.87169 * 205.89898 * 18 17 16 21 21 H 1.08004 * 120.00001 * 355.06757 * 20 18 17 22 22 C 1.37875 * 120.00185 * 175.06209 * 20 18 17 23 23 N 1.31515 * 119.99987 * 359.97438 * 22 20 18 24 24 Si 1.86804 * 120.00140 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46769 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46945 * 120.00135 * 24 22 20 27 27 H 1.48498 * 109.47293 * 240.00046 * 24 22 20 28 28 C 1.47027 * 125.64792 * 179.97438 * 15 13 12 29 29 H 1.09008 * 109.46582 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47189 * 299.99298 * 1 2 3 31 31 H 1.08993 * 109.47140 * 59.99625 * 1 2 3 32 32 H 1.08992 * 109.47403 * 55.73099 * 4 2 1 33 33 H 1.08997 * 109.47092 * 295.72665 * 4 2 1 34 34 H 1.08996 * 109.48909 * 303.15235 * 6 5 4 35 35 H 1.08997 * 109.48478 * 63.20034 * 6 5 4 36 36 H 1.09005 * 109.48901 * 61.57703 * 7 6 5 37 37 H 1.09000 * 109.49041 * 181.64248 * 7 6 5 38 38 H 1.08995 * 109.47381 * 296.17556 * 9 8 7 39 39 H 1.08998 * 109.47016 * 56.17823 * 9 8 7 40 40 H 1.09001 * 109.47051 * 176.17906 * 9 8 7 41 41 H 1.09003 * 109.48537 * 180.72484 * 10 8 7 42 42 H 1.09002 * 109.50628 * 60.67081 * 10 8 7 43 43 H 1.08998 * 109.48465 * 296.78327 * 11 5 4 44 44 H 1.09000 * 109.48292 * 56.82445 * 11 5 4 45 45 H 0.97002 * 119.99934 * 263.87184 * 12 2 1 46 46 H 1.09006 * 110.36431 * 274.75016 * 16 15 13 47 47 H 1.08998 * 110.36537 * 37.07006 * 16 15 13 48 48 H 1.08994 * 111.18997 * 279.18968 * 17 16 15 49 49 H 1.08996 * 110.90709 * 155.27294 * 17 16 15 50 50 H 0.96696 * 114.00099 * 185.02515 * 19 18 17 51 51 H 0.96997 * 120.00219 * 179.97438 * 23 22 20 52 52 H 1.08995 * 109.88319 * 300.43520 * 28 15 13 53 53 H 1.09006 * 109.88167 * 61.44686 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5054 -0.8112 1.1986 6 6 4.1239 0.4824 1.5210 7 6 5.6436 0.3679 1.3805 8 7 6.1377 -0.6871 2.2763 9 6 7.6031 -0.7770 2.2258 10 6 5.5192 -1.9807 1.9540 11 6 3.9996 -1.8658 2.0949 12 7 2.0184 -0.6905 -1.1963 13 6 2.1256 -0.0238 -2.3627 14 8 1.8165 1.1507 -2.4222 15 7 2.5743 -0.6591 -3.4632 16 6 2.9869 -2.0729 -3.5310 17 6 2.8076 -2.4649 -5.0212 18 6 3.2517 -1.1628 -5.7388 19 8 4.6749 -1.1099 -5.8554 20 6 2.6030 -1.0488 -7.0942 21 1 1.9941 -1.8572 -7.4713 22 6 2.7867 0.0877 -7.8530 23 7 3.5276 1.0724 -7.3936 24 14 1.9831 0.2288 -9.5335 25 1 1.2066 -1.0052 -9.8159 26 1 1.0718 1.4011 -9.5495 27 1 3.0317 0.4027 -10.5705 28 6 2.7392 -0.0556 -4.7937 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6157 -1.7245 1.2882 33 1 1.7406 -0.1653 2.1375 34 1 3.7518 1.2441 0.8359 35 1 3.8732 0.7602 2.5447 36 1 5.8957 0.1171 0.3500 37 1 6.1061 1.3181 1.6473 38 1 7.9146 -1.0734 1.2242 39 1 8.0352 0.1938 2.4683 40 1 7.9467 -1.5182 2.9474 41 1 5.8914 -2.7425 2.6391 42 1 5.7695 -2.2588 0.9302 43 1 3.7478 -1.6148 3.1253 44 1 3.5365 -2.8159 1.8285 45 1 2.2646 -1.6276 -1.1488 46 1 4.0296 -2.1786 -3.2314 47 1 2.3454 -2.6860 -2.8981 48 1 1.7667 -2.6987 -5.2446 49 1 3.4589 -3.2980 -5.2854 50 1 5.0086 -0.2820 -6.2272 51 1 3.6571 1.8717 -7.9276 52 1 1.7813 0.3225 -5.1505 53 1 3.4636 0.7575 -4.7448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645861588.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -84.499429 kcal Electronic energy + Delta-G solvation = -31774.105611 eV Core-core repulsion = 27679.771933 eV Total energy + Delta-G solvation = -4094.333678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29935 -40.29265 -39.18214 -37.41015 -36.02202 -35.33249 -34.22631 -32.45318 -31.91429 -31.05992 -29.56412 -29.41529 -26.95587 -26.29320 -24.73110 -24.39796 -23.93689 -21.98122 -21.36201 -20.96869 -20.69044 -19.19912 -18.80433 -17.50648 -17.24883 -17.09519 -16.59847 -16.21993 -16.17374 -15.94814 -15.85563 -15.55740 -15.28115 -15.22884 -14.83072 -14.73018 -14.68967 -14.10230 -13.84428 -13.52383 -13.49072 -13.44202 -13.25917 -13.13436 -12.97707 -12.86949 -12.75750 -12.54126 -12.49417 -12.33101 -12.25026 -12.24508 -12.11355 -12.06772 -11.72670 -11.46552 -11.20623 -11.15314 -10.65592 -10.27683 -10.09314 -9.45218 -9.31439 -9.23681 -8.25613 -6.41554 1.39740 1.42739 1.53735 1.77521 2.26833 2.38060 2.82439 2.96073 3.01118 3.19843 3.77464 3.82142 3.87685 4.06826 4.07898 4.15688 4.20426 4.22326 4.32833 4.35783 4.40460 4.47060 4.50979 4.58987 4.60433 4.62418 4.66846 4.74445 4.76255 4.80498 4.83382 4.88432 4.97536 5.00270 5.05190 5.07856 5.07917 5.14606 5.29227 5.31521 5.37967 5.52860 5.69789 5.75529 5.93116 5.95589 6.05841 6.14101 6.17562 6.29037 6.65803 7.18561 7.27862 7.35298 7.70376 8.80637 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.002890 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.494271 B = 9685.892089 C =10553.009161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 H 0.052 0.948 4 C 0.059 3.941 5 N -0.551 5.551 6 C 0.064 3.936 7 C 0.059 3.941 8 N -0.549 5.549 9 C 0.024 3.976 10 C 0.054 3.946 11 C 0.062 3.938 12 N -0.707 5.707 13 C 0.711 3.289 14 O -0.649 6.649 15 N -0.637 5.637 16 C 0.114 3.886 17 C -0.110 4.110 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.555 4.555 21 H 0.067 0.933 22 C 0.024 3.976 23 N -0.916 5.916 24 Si 0.964 3.036 25 H -0.263 1.263 26 H -0.285 1.285 27 H -0.277 1.277 28 C 0.146 3.854 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.018 0.982 37 H 0.083 0.917 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.027 0.973 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.406 0.594 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.374 0.626 51 H 0.269 0.731 52 H 0.026 0.974 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 -8.725 22.687 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.071 0.929 4 C -0.069 4.069 5 N -0.276 5.276 6 C -0.064 4.064 7 C -0.069 4.069 8 N -0.274 5.274 9 C -0.124 4.124 10 C -0.074 4.074 11 C -0.065 4.065 12 N -0.362 5.362 13 C 0.413 3.587 14 O -0.532 6.532 15 N -0.374 5.374 16 C -0.008 4.008 17 C -0.148 4.148 18 C 0.193 3.807 19 O -0.395 6.395 20 C -0.593 4.593 21 H 0.086 0.914 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.789 3.211 25 H -0.187 1.187 26 H -0.211 1.211 27 H -0.203 1.203 28 C 0.022 3.978 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.101 0.899 38 H 0.037 0.963 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.243 0.757 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.102 0.898 49 H 0.107 0.893 50 H 0.223 0.777 51 H 0.078 0.922 52 H 0.044 0.956 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.501 -8.293 22.964 24.420 hybrid contribution 0.055 1.199 -1.699 2.080 sum 0.556 -7.094 21.265 22.423 Atomic orbital electron populations 1.22110 0.94408 1.03013 1.01954 1.20846 0.93857 0.96008 0.83350 0.92931 1.22374 0.86976 1.02347 0.95233 1.62015 1.06216 1.05856 1.53468 1.22052 0.93592 0.91440 0.99356 1.22094 0.95138 0.95782 0.93914 1.62257 1.07190 1.06034 1.51910 1.22393 0.86610 1.03197 1.00169 1.22246 0.94567 0.91028 0.99550 1.22204 0.94231 0.95355 0.94749 1.44775 1.70499 1.14338 1.06635 1.15756 0.78194 0.84043 0.80658 1.90827 1.59792 1.17185 1.85446 1.47867 1.67669 1.13091 1.08785 1.22336 0.99939 0.80689 0.97839 1.22750 1.01752 0.97172 0.93088 1.19722 0.78809 0.90610 0.91565 1.86092 1.23417 1.43402 1.86569 1.21863 1.31869 1.03027 1.02591 0.91440 1.25839 0.94985 0.94928 1.01939 1.69828 1.39419 1.07160 1.39137 0.85419 0.78279 0.78117 0.79294 1.18731 1.21088 1.20283 1.22253 0.98051 0.96995 0.80525 0.90625 0.89645 0.95200 0.87785 0.91368 0.92127 0.93233 0.96392 0.89907 0.96333 0.90962 0.89829 0.88556 0.95432 0.93546 0.88342 0.75746 0.91801 0.88261 0.89791 0.89285 0.77716 0.92194 0.95569 0.95965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.47 71.98 0.68 -2.65 16 2 C 0.17 3.94 2.58 44.99 0.12 4.06 16 3 H 0.05 1.60 6.51 -2.39 -0.02 1.59 16 4 C 0.06 0.92 4.55 86.30 0.39 1.32 16 5 N -0.55 -10.28 4.38 -895.73 -3.92 -14.21 16 6 C 0.06 1.35 5.43 86.31 0.47 1.81 16 7 C 0.06 1.28 5.62 86.31 0.49 1.77 16 8 N -0.55 -10.18 4.97 -921.93 -4.58 -14.75 16 9 C 0.02 0.38 9.60 127.69 1.23 1.61 16 10 C 0.05 0.88 5.62 86.31 0.49 1.36 16 11 C 0.06 0.89 5.56 86.31 0.48 1.37 16 12 N -0.71 -20.43 4.79 -457.80 -2.19 -22.63 16 13 C 0.71 29.53 8.44 179.06 1.51 31.04 16 14 O -0.65 -33.07 16.35 -3.99 -0.07 -33.13 16 15 N -0.64 -27.10 3.33 -829.27 -2.76 -29.86 16 16 C 0.11 3.83 6.58 86.93 0.57 4.41 16 17 C -0.11 -4.24 6.24 32.06 0.20 -4.04 16 18 C 0.23 11.55 0.85 -10.35 -0.01 11.54 16 19 O -0.59 -30.37 13.07 -148.98 -1.95 -32.31 16 20 C -0.56 -29.69 8.13 25.60 0.21 -29.48 16 21 H 0.07 3.50 7.78 -2.91 -0.02 3.48 16 22 C 0.02 1.28 5.28 84.65 0.45 1.72 16 23 N -0.92 -51.29 10.96 21.45 0.24 -51.05 16 24 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 25 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 28 C 0.15 7.57 5.23 86.73 0.45 8.02 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.17 7.84 -2.39 -0.02 1.15 16 33 H 0.07 0.90 7.99 -2.39 -0.02 0.88 16 34 H 0.06 1.54 6.88 -2.39 -0.02 1.52 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.08 1.66 8.13 -2.39 -0.02 1.64 16 38 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.10 1.05 8.00 -2.39 -0.02 1.04 16 45 H 0.41 9.67 7.07 -92.71 -0.66 9.01 16 46 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.10 2.46 7.29 -2.39 -0.02 2.45 16 48 H 0.08 3.10 8.04 -2.39 -0.02 3.08 16 49 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 50 H 0.37 20.29 7.45 -74.06 -0.55 19.74 16 51 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 52 H 0.03 1.50 7.81 -2.39 -0.02 1.48 16 53 H 0.02 1.29 7.92 -2.38 -0.02 1.27 16 Total: -1.00 -70.50 410.75 -5.80 -76.30 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: -0.31 Total: 42.83 kcal Atomic # 6 Polarization: 26.16 SS G_CDS: 7.72 Total: 33.88 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -13.22 Total: -132.49 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -2.01 Total: -65.45 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -70.50 -5.80 -76.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645861588.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.201 kcal (2) G-P(sol) polarization free energy of solvation -70.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds