Wall clock time and date at job start Sat Apr 11 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47106 * 2 1 4 4 C 1.46897 * 111.00006 * 290.47755 * 3 2 1 5 5 C 1.53006 * 109.46993 * 289.18263 * 4 3 2 6 6 C 1.53003 * 109.46935 * 176.17419 * 5 4 3 7 7 C 1.53004 * 109.47085 * 296.17202 * 5 4 3 8 8 C 1.38582 * 110.99759 * 54.42703 * 3 2 1 9 9 N 1.31212 * 126.47586 * 254.88474 * 8 3 2 10 10 N 1.28531 * 109.86067 * 179.73261 * 9 8 3 11 11 C 1.30294 * 110.05480 * 0.45514 * 10 9 8 12 12 C 1.50695 * 126.35054 * 179.82022 * 11 10 9 13 13 C 1.52993 * 109.47115 * 269.69235 * 12 11 10 14 14 H 1.08998 * 109.47639 * 54.99649 * 13 12 11 15 15 O 1.42902 * 109.47224 * 294.99556 * 13 12 11 16 16 C 1.50703 * 109.47095 * 174.99809 * 13 12 11 17 17 H 1.07997 * 119.99951 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00040 * 179.97438 * 16 13 12 19 19 N 1.31518 * 120.00081 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99984 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47205 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47284 * 120.00224 * 20 18 16 23 23 H 1.48505 * 109.47210 * 240.00448 * 20 18 16 24 24 N 1.36456 * 126.47076 * 74.89310 * 8 3 2 25 25 C 1.46504 * 127.13690 * 359.97438 * 24 8 3 26 26 C 1.52997 * 109.46771 * 264.49599 * 25 24 8 27 27 O 1.42904 * 109.46710 * 181.34332 * 26 25 24 28 28 C 1.42903 * 113.99830 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47027 * 185.32907 * 1 2 3 30 30 H 1.08995 * 109.46963 * 305.33037 * 1 2 3 31 31 H 1.08998 * 109.46932 * 65.33164 * 1 2 3 32 32 H 1.09002 * 109.47246 * 239.99947 * 2 1 3 33 33 H 1.09001 * 109.47283 * 119.99917 * 2 1 3 34 34 H 1.08995 * 109.47346 * 49.18137 * 4 3 2 35 35 H 1.08999 * 109.47438 * 169.18450 * 4 3 2 36 36 H 1.08997 * 109.47234 * 56.17599 * 5 4 3 37 37 H 1.08997 * 109.47012 * 60.00044 * 6 5 4 38 38 H 1.09004 * 109.46850 * 179.97438 * 6 5 4 39 39 H 1.09001 * 109.46901 * 299.99916 * 6 5 4 40 40 H 1.09003 * 109.46920 * 59.99851 * 7 5 4 41 41 H 1.08997 * 109.46790 * 180.02562 * 7 5 4 42 42 H 1.09008 * 109.46949 * 300.00243 * 7 5 4 43 43 H 1.09007 * 109.47041 * 29.69123 * 12 11 10 44 44 H 1.08999 * 109.47310 * 149.68881 * 12 11 10 45 45 H 0.96701 * 113.99641 * 300.00697 * 15 13 12 46 46 H 0.96996 * 120.00374 * 179.97438 * 19 18 16 47 47 H 1.08995 * 109.46960 * 24.49310 * 25 24 8 48 48 H 1.08998 * 109.46657 * 144.49520 * 25 24 8 49 49 H 1.09003 * 109.47035 * 301.33932 * 26 25 24 50 50 H 1.08998 * 109.47524 * 61.34413 * 26 25 24 51 51 H 1.08995 * 109.47294 * 59.99777 * 28 27 26 52 52 H 1.09001 * 109.46856 * 180.02562 * 28 27 26 53 53 H 1.09007 * 109.46779 * 299.99692 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7428 2.0412 -1.2847 5 6 2.6466 1.4462 -2.3665 6 6 2.2925 2.0614 -3.7220 7 6 4.1086 1.7512 -2.0343 8 6 1.4756 2.1040 1.0523 9 7 0.5280 3.0080 0.9719 10 7 0.2639 3.4691 2.1423 11 6 1.0279 2.8985 3.0302 12 6 1.0291 3.1677 4.5129 13 6 2.0248 4.2858 4.8274 14 1 1.7873 5.1636 4.2266 15 8 3.3492 3.8440 4.5225 16 6 1.9375 4.6395 6.2898 17 1 1.2412 4.1191 6.9306 18 6 2.7467 5.6274 6.8096 19 7 3.5944 6.2615 6.0292 20 14 2.6390 6.0653 8.6224 21 1 1.6155 5.2120 9.2778 22 1 3.9579 5.8380 9.2657 23 1 2.2583 7.4936 8.7649 24 7 1.8244 2.0058 2.3679 25 6 2.8409 1.1261 2.9502 26 6 2.1752 -0.1516 3.4650 27 8 3.1621 -0.9960 4.0609 28 6 2.6421 -2.2229 4.5773 29 1 -0.3633 -1.0232 0.0954 30 1 -0.3633 0.5943 0.8384 31 1 -0.3633 0.4289 -0.9339 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6991 1.8832 -1.5560 35 1 1.9375 3.1100 -1.1962 36 1 2.5010 0.3668 -2.4084 37 1 2.4381 3.1408 -3.6802 38 1 2.9367 1.6379 -4.4926 39 1 1.2510 1.8441 -3.9586 40 1 4.3608 1.3130 -1.0686 41 1 4.7523 1.3277 -2.8052 42 1 4.2541 2.8308 -1.9925 43 1 0.0306 3.4711 4.8279 44 1 1.3188 2.2624 5.0463 45 1 3.6284 3.0643 5.0218 46 1 4.1634 6.9568 6.3948 47 1 3.5787 0.8703 2.1897 48 1 3.3336 1.6376 3.7770 49 1 1.4206 0.1060 4.2082 50 1 1.7027 -0.6754 2.6340 51 1 2.1791 -2.7898 3.7697 52 1 3.4532 -2.8065 5.0128 53 1 1.8975 -2.0078 5.3438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646813944.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:59 Heat of formation + Delta-G solvation = -38.920747 kcal Electronic energy + Delta-G solvation = -32132.355738 eV Core-core repulsion = 28039.998500 eV Total energy + Delta-G solvation = -4092.357238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.06436 -39.76857 -39.10624 -38.05564 -36.26168 -35.61337 -34.26307 -33.08893 -31.61860 -30.71599 -29.51851 -27.95074 -27.39885 -27.16087 -26.85369 -24.71448 -24.11585 -23.52458 -21.91611 -21.24929 -20.38713 -19.22003 -18.38193 -17.84681 -17.45854 -17.16846 -16.89604 -16.67474 -16.52047 -16.15655 -16.06496 -15.74741 -15.39323 -15.07018 -14.77953 -14.76102 -14.64491 -14.19636 -14.02434 -13.63149 -13.41925 -13.28789 -13.11471 -13.02453 -12.85667 -12.83337 -12.80348 -12.67592 -12.56986 -12.49463 -12.29011 -12.10064 -12.01074 -11.89180 -11.84995 -11.50763 -11.38406 -11.29795 -11.08632 -10.73538 -10.72100 -10.64428 -10.16658 -9.29210 -8.13232 -6.39783 0.76609 1.14524 1.42226 1.44125 1.55853 1.81279 2.40409 2.44609 2.97338 3.13175 3.43919 3.58337 3.69424 3.77677 3.86642 3.95064 3.98478 4.07203 4.12459 4.19022 4.22817 4.24485 4.35758 4.45005 4.48394 4.50170 4.52490 4.55774 4.64147 4.66434 4.73920 4.83264 4.85542 4.86549 4.88522 4.90758 4.94681 5.07063 5.09862 5.13669 5.21517 5.27210 5.44635 5.48747 5.57946 5.61732 5.70029 5.74307 6.02199 6.03165 6.23061 6.71855 7.31786 7.49203 7.76189 8.91615 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.003421 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.349701 B = 8182.518687 C = 9394.543021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.046 3.954 3 N -0.449 5.449 4 C 0.076 3.924 5 C -0.082 4.082 6 C -0.144 4.144 7 C -0.139 4.139 8 C 0.359 3.641 9 N -0.353 5.353 10 N -0.334 5.334 11 C 0.207 3.793 12 C -0.046 4.046 13 C 0.244 3.756 14 H 0.011 0.989 15 O -0.573 6.573 16 C -0.581 4.581 17 H 0.071 0.929 18 C 0.025 3.975 19 N -0.901 5.901 20 Si 0.962 3.038 21 H -0.258 1.258 22 H -0.279 1.279 23 H -0.285 1.285 24 N -0.459 5.459 25 C 0.111 3.889 26 C 0.059 3.941 27 O -0.399 6.399 28 C 0.026 3.974 29 H 0.087 0.913 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.355 0.645 46 H 0.260 0.740 47 H 0.114 0.886 48 H 0.102 0.898 49 H 0.053 0.947 50 H 0.068 0.932 51 H 0.057 0.943 52 H 0.104 0.896 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -21.552 -12.845 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.080 4.080 3 N -0.173 5.173 4 C -0.051 4.051 5 C -0.101 4.101 6 C -0.202 4.202 7 C -0.197 4.197 8 C 0.002 3.998 9 N -0.196 5.196 10 N -0.172 5.172 11 C -0.062 4.062 12 C -0.086 4.086 13 C 0.185 3.815 14 H 0.029 0.971 15 O -0.378 6.378 16 C -0.618 4.618 17 H 0.089 0.911 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.787 3.213 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.211 1.211 24 N -0.153 5.153 25 C -0.012 4.012 26 C -0.019 4.019 27 O -0.318 6.318 28 C -0.070 4.070 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.200 0.800 46 H 0.069 0.931 47 H 0.132 0.868 48 H 0.120 0.880 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.123 0.877 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.655 -20.000 -13.813 24.363 hybrid contribution -0.100 -0.164 1.822 1.832 sum -1.755 -20.164 -11.991 23.525 Atomic orbital electron populations 1.22343 0.96915 1.03093 1.01584 1.22643 0.93870 0.86002 1.05492 1.59033 1.54791 1.03030 1.00469 1.22188 0.99344 0.97805 0.85751 1.21148 0.94700 1.01081 0.93197 1.21793 1.02083 1.00623 0.95714 1.21739 0.95491 1.00633 1.01813 1.22633 0.94077 0.98655 0.84415 1.74443 1.14557 1.14272 1.16373 1.73893 1.24002 1.23551 0.95772 1.25063 0.91630 0.91303 0.98236 1.20881 1.03240 1.01487 0.83004 1.19072 0.78812 0.89697 0.93904 0.97113 1.86602 1.34498 1.49746 1.66932 1.21999 1.23168 1.21369 0.95302 0.91103 1.25927 0.94251 0.95168 1.02368 1.70245 1.22843 1.23490 1.37183 0.85466 0.78237 0.77958 0.79642 1.18137 1.20490 1.21068 1.45930 1.31164 1.31819 1.06402 1.21708 0.88862 0.89390 1.01252 1.22682 0.91080 0.90484 0.97650 1.87816 1.34190 1.31966 1.77820 1.23009 1.01023 0.84571 0.98425 0.89380 0.95697 0.91841 0.85870 0.89813 0.92647 0.92839 0.88980 0.93547 0.90738 0.92060 0.92667 0.91429 0.94631 0.88581 0.88566 0.79962 0.93075 0.86767 0.87985 0.92877 0.91451 0.92485 0.87745 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 9.38 71.98 0.67 -2.78 16 2 C 0.05 0.80 5.99 86.30 0.52 1.32 16 3 N -0.45 -11.09 4.08 -706.02 -2.88 -13.97 16 4 C 0.08 1.78 3.73 86.31 0.32 2.10 16 5 C -0.08 -1.34 2.91 -10.79 -0.03 -1.38 16 6 C -0.14 -2.05 9.19 71.98 0.66 -1.39 16 7 C -0.14 -2.54 9.07 71.98 0.65 -1.89 16 8 C 0.36 11.99 5.21 260.11 1.35 13.35 16 9 N -0.35 -14.30 11.16 -58.00 -0.65 -14.95 16 10 N -0.33 -14.96 12.18 -49.54 -0.60 -15.56 16 11 C 0.21 8.33 7.09 137.64 0.98 9.31 16 12 C -0.05 -1.85 5.15 29.84 0.15 -1.70 16 13 C 0.24 12.38 2.81 29.85 0.08 12.47 16 14 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 15 O -0.57 -28.64 11.57 -148.98 -1.72 -30.37 16 16 C -0.58 -30.88 8.76 25.60 0.22 -30.65 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 18 C 0.03 1.40 5.40 84.65 0.46 1.86 16 19 N -0.90 -54.06 12.84 21.45 0.28 -53.78 16 20 Si 0.96 42.74 29.54 68.60 2.03 44.76 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 N -0.46 -15.40 2.81 -514.86 -1.45 -16.85 16 25 C 0.11 3.00 5.91 86.38 0.51 3.51 16 26 C 0.06 1.28 6.17 71.98 0.44 1.72 16 27 O -0.40 -8.52 10.70 -148.98 -1.59 -10.11 16 28 C 0.03 0.36 11.01 113.37 1.25 1.61 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.02 0.65 6.71 -2.39 -0.02 0.64 16 31 H 0.06 1.22 6.70 -2.39 -0.02 1.20 16 32 H 0.12 1.44 6.29 -2.39 -0.02 1.43 16 33 H 0.08 1.39 5.36 -2.39 -0.01 1.38 16 34 H 0.06 1.29 6.34 -2.39 -0.02 1.28 16 35 H 0.05 1.59 7.87 -2.39 -0.02 1.58 16 36 H 0.09 1.13 6.43 -2.39 -0.02 1.12 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 1.12 7.72 -2.39 -0.02 1.10 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.10 3.84 8.14 -2.38 -0.02 3.82 16 44 H 0.10 3.30 7.66 -2.39 -0.02 3.28 16 45 H 0.35 15.15 7.70 -74.06 -0.57 14.58 16 46 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.11 2.86 8.10 -2.39 -0.02 2.84 16 48 H 0.10 3.07 5.62 -2.39 -0.01 3.05 16 49 H 0.05 1.21 7.82 -2.39 -0.02 1.19 16 50 H 0.07 1.26 5.84 -2.39 -0.01 1.25 16 51 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -73.24 415.72 1.99 -71.25 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.33 Total: 32.13 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 8.25 Total: 7.45 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -5.30 Total: -115.11 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -3.32 Total: -40.48 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -73.24 1.99 -71.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646813944.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.326 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds