Wall clock time and date at job start Sat Apr 11 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99878 * 2 1 4 4 C 1.53000 * 109.46629 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47160 * 178.58146 * 4 3 2 6 6 C 1.36453 * 127.13131 * 267.66117 * 5 4 3 7 7 N 1.38582 * 126.47876 * 0.02562 * 6 5 4 8 8 C 1.46896 * 110.99656 * 68.03116 * 7 6 5 9 9 C 1.46896 * 111.00136 * 191.98625 * 7 6 5 10 10 H 1.09001 * 109.47042 * 299.99752 * 9 7 6 11 11 C 1.53000 * 109.47048 * 59.99870 * 9 7 6 12 12 C 1.50695 * 109.47058 * 179.97438 * 9 7 6 13 13 H 1.08003 * 119.99996 * 0.02562 * 12 9 7 14 14 C 1.37879 * 120.00362 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99908 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00502 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47286 * 90.00030 * 16 14 12 18 18 H 1.48497 * 109.47380 * 210.00270 * 16 14 12 19 19 H 1.48504 * 109.47081 * 330.00125 * 16 14 12 20 20 N 1.31225 * 107.05012 * 179.86870 * 6 5 4 21 21 N 1.28525 * 109.85990 * 0.40564 * 20 6 5 22 22 C 1.30298 * 110.05494 * 359.73856 * 21 20 6 23 23 C 1.50700 * 126.34900 * 180.02562 * 22 21 20 24 24 C 1.52995 * 109.46884 * 127.84703 * 23 22 21 25 25 C 1.53001 * 109.47068 * 247.84625 * 23 22 21 26 26 C 1.52999 * 109.46842 * 7.84646 * 23 22 21 27 27 O 1.42904 * 109.46519 * 179.97438 * 26 23 22 28 28 C 1.42904 * 113.99579 * 180.02562 * 27 26 23 29 29 H 1.08994 * 109.46748 * 300.00312 * 1 2 3 30 30 H 1.08998 * 109.46573 * 59.99535 * 1 2 3 31 31 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47513 * 299.99830 * 3 2 1 33 33 H 1.08996 * 109.47129 * 60.00427 * 3 2 1 34 34 H 1.09000 * 109.47343 * 298.57879 * 4 3 2 35 35 H 1.08999 * 109.47474 * 58.58244 * 4 3 2 36 36 H 1.08993 * 109.47481 * 46.38397 * 8 7 6 37 37 H 1.09011 * 109.47033 * 166.38435 * 8 7 6 38 38 H 1.08995 * 109.47336 * 286.37711 * 8 7 6 39 39 H 1.09000 * 109.46863 * 179.97438 * 11 9 7 40 40 H 1.08999 * 109.47394 * 299.99444 * 11 9 7 41 41 H 1.09001 * 109.47295 * 60.00037 * 11 9 7 42 42 H 0.96995 * 120.00460 * 180.02562 * 15 14 12 43 43 H 1.08999 * 109.47208 * 70.72733 * 24 23 22 44 44 H 1.09002 * 109.47140 * 190.72391 * 24 23 22 45 45 H 1.09008 * 109.47426 * 310.72424 * 24 23 22 46 46 H 1.09001 * 109.47253 * 65.19113 * 25 23 22 47 47 H 1.09003 * 109.46818 * 185.18863 * 25 23 22 48 48 H 1.08997 * 109.47050 * 305.18777 * 25 23 22 49 49 H 1.08998 * 109.47506 * 299.99968 * 26 23 22 50 50 H 1.09002 * 109.47214 * 59.99925 * 26 23 22 51 51 H 1.09005 * 109.46720 * 59.99954 * 28 27 26 52 52 H 1.08995 * 109.47313 * 180.02562 * 28 27 26 53 53 H 1.09005 * 109.47248 * 300.00483 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5225 -0.0335 6 6 4.5054 3.2296 -1.1390 7 7 4.3934 2.8176 -2.4574 8 6 2.9845 2.7336 -2.8647 9 6 5.1481 3.7050 -3.3522 10 1 4.7601 4.7202 -3.2692 11 6 6.6263 3.6901 -2.9575 12 6 5.0035 3.2261 -4.7738 13 1 4.4098 2.3504 -4.9908 14 6 5.6281 3.9066 -5.7974 15 7 6.3506 4.9733 -5.5333 16 14 5.4482 3.3134 -7.5596 17 1 4.2667 3.9628 -8.1823 18 1 6.6691 3.6662 -8.3277 19 1 5.2657 1.8397 -7.5696 20 7 4.9880 4.3750 -0.7180 21 7 4.9463 4.4209 0.5657 22 6 4.4337 3.3191 1.0359 23 6 4.2142 2.9850 2.4889 24 6 2.7626 2.5492 2.6982 25 6 5.1522 1.8476 2.8979 26 6 4.5049 4.2189 3.3454 27 8 4.2961 3.9022 4.7232 28 6 4.5412 4.9925 5.6138 29 1 -0.3632 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8464 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 3.8585 0.6659 0.9033 35 1 3.8558 0.6217 -0.8761 36 1 2.4588 3.6323 -2.5421 37 1 2.9245 2.6474 -3.9498 38 1 2.5248 1.8589 -2.4049 39 1 7.1863 4.3482 -3.6218 40 1 6.7313 4.0363 -1.9293 41 1 7.0143 2.6749 -3.0405 42 1 6.7897 5.4522 -6.2534 43 1 2.6078 1.5707 2.2437 44 1 2.5510 2.4915 3.7659 45 1 2.0947 3.2751 2.2342 46 1 6.1855 2.1889 2.8365 47 1 4.9301 1.5437 3.9209 48 1 5.0091 0.9999 2.2279 49 1 5.5390 4.5294 3.1963 50 1 3.8366 5.0293 3.0540 51 1 3.8736 5.8187 5.3689 52 1 4.3612 4.6713 6.6397 53 1 5.5761 5.3193 5.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649086639.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:05 Heat of formation + Delta-G solvation = 13.780712 kcal Electronic energy + Delta-G solvation = -32375.929444 eV Core-core repulsion = 28285.857513 eV Total energy + Delta-G solvation = -4090.071931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.69681 -38.67517 -38.27782 -37.16137 -35.86753 -34.58944 -32.77189 -30.01353 -29.28144 -29.11124 -27.61615 -27.52728 -26.63881 -25.82838 -25.19401 -24.34061 -23.61574 -22.35434 -21.45427 -19.54373 -19.27971 -17.39069 -16.65041 -16.36544 -16.29053 -16.19287 -15.87796 -15.73992 -15.51520 -15.05863 -14.92129 -14.55203 -14.33093 -14.09989 -13.86605 -13.42955 -13.30676 -13.07063 -12.57100 -12.49792 -12.35579 -12.11387 -12.03387 -11.91376 -11.66988 -11.55813 -11.35214 -11.24703 -11.11401 -11.01809 -10.96926 -10.82183 -10.62499 -10.35320 -10.21815 -10.08680 -9.92842 -9.80332 -9.77101 -9.68730 -9.28816 -8.66124 -8.46744 -7.44826 -6.05923 -4.13733 2.12618 2.40616 3.27007 3.33936 3.34255 3.36860 3.44698 3.74481 4.25946 4.33868 4.51414 4.62163 4.68717 4.71891 4.74708 4.97594 5.01059 5.08029 5.11573 5.18184 5.20091 5.25542 5.26332 5.40454 5.41330 5.46763 5.48027 5.49216 5.57404 5.60014 5.68570 5.73048 5.80778 5.88545 5.95294 6.07615 6.14432 6.18165 6.34432 6.49434 6.77043 6.87201 6.98533 7.00074 7.15121 7.25542 7.43572 7.68001 7.71966 7.96058 8.25105 8.42841 8.87873 9.30104 9.50839 11.00287 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.003501 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.135943 B = 7996.749203 C = 9783.930617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.028 3.972 4 C 0.111 3.889 5 N -0.476 5.476 6 C 0.389 3.611 7 N -0.457 5.457 8 C 0.029 3.971 9 C 0.230 3.770 10 H 0.024 0.976 11 C -0.137 4.137 12 C -0.519 4.519 13 H 0.065 0.935 14 C 0.065 3.935 15 N -0.882 5.882 16 Si 0.899 3.101 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.273 1.273 20 N -0.312 5.312 21 N -0.283 5.283 22 C 0.159 3.841 23 C 0.038 3.962 24 C -0.153 4.153 25 C -0.140 4.140 26 C 0.084 3.916 27 O -0.391 6.391 28 C 0.034 3.966 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.024 0.976 37 H 0.104 0.896 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.041 0.959 52 H 0.084 0.916 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -7.051 18.626 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.049 4.049 4 C -0.013 4.013 5 N -0.173 5.173 6 C 0.034 3.966 7 N -0.182 5.182 8 C -0.118 4.118 9 C 0.126 3.874 10 H 0.041 0.959 11 C -0.195 4.195 12 C -0.557 4.557 13 H 0.083 0.917 14 C -0.138 4.138 15 N -0.520 5.520 16 Si 0.727 3.273 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.198 1.198 20 N -0.156 5.156 21 N -0.122 5.122 22 C -0.109 4.109 23 C 0.035 3.965 24 C -0.210 4.210 25 C -0.198 4.198 26 C 0.007 3.993 27 O -0.310 6.310 28 C -0.063 4.063 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.043 0.957 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.059 0.941 52 H 0.102 0.898 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.901 -6.331 18.435 21.428 hybrid contribution -0.969 -0.390 -1.141 1.547 sum -9.870 -6.721 17.294 21.017 Atomic orbital electron populations 1.22775 0.80327 1.02986 1.00269 1.87804 1.20208 1.26754 1.95561 1.23328 0.93334 0.85810 1.02474 1.21574 0.91868 0.81575 1.06251 1.45890 1.49504 1.15845 1.06105 1.23169 0.97681 0.87283 0.88496 1.59076 1.12209 1.51556 0.95375 1.22570 0.85895 0.98849 1.04463 1.19346 0.90148 0.89457 0.88414 0.95858 1.21863 0.98163 1.00079 0.99388 1.21057 1.31976 1.12783 0.89898 0.91667 1.24896 0.94905 0.94844 0.99169 1.69921 1.31747 1.17968 1.32372 0.86482 0.77587 0.79069 0.84176 1.20680 1.21120 1.19809 1.74853 1.23650 1.14607 1.02512 1.73939 1.16606 1.18112 1.03554 1.24070 1.05325 0.90637 0.90858 1.18680 0.97190 0.96160 0.84442 1.22248 0.93901 1.01354 1.03530 1.21905 0.99166 0.96605 1.02074 1.22257 1.01374 0.95295 0.80383 1.87765 1.90277 1.36668 1.16247 1.22708 0.99869 0.89943 0.93746 0.93968 0.93745 0.89251 0.91913 0.91321 0.88052 0.87171 0.95697 0.87796 0.92829 0.89316 0.95162 0.95624 0.92707 0.91494 0.90229 0.92427 0.91919 0.90561 0.92582 0.91805 0.92406 0.94080 0.89772 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.30 10.70 -35.23 -0.38 -4.67 16 3 C 0.03 0.32 5.38 37.16 0.20 0.52 16 4 C 0.11 1.45 4.90 -4.04 -0.02 1.43 16 5 N -0.48 -7.87 2.81 -114.08 -0.32 -8.19 16 6 C 0.39 8.08 6.25 -318.86 -1.99 6.08 16 7 N -0.46 -9.96 4.66 -176.09 -0.82 -10.78 16 8 C 0.03 0.55 8.92 60.06 0.54 1.08 16 9 C 0.23 5.92 1.72 -68.87 -0.12 5.81 16 10 H 0.02 0.68 7.99 -51.93 -0.41 0.27 16 11 C -0.14 -3.58 8.78 37.16 0.33 -3.25 16 12 C -0.52 -13.83 7.68 -34.44 -0.26 -14.09 16 13 H 0.07 1.68 6.55 -52.48 -0.34 1.34 16 14 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 15 N -0.88 -25.14 11.32 55.43 0.63 -24.52 16 16 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 N -0.31 -7.14 9.54 30.32 0.29 -6.85 16 21 N -0.28 -5.68 11.51 32.99 0.38 -5.30 16 22 C 0.16 2.59 6.33 -154.01 -0.98 1.61 16 23 C 0.04 0.47 0.60 -155.66 -0.09 0.37 16 24 C -0.15 -1.57 6.83 37.16 0.25 -1.32 16 25 C -0.14 -1.54 8.16 37.16 0.30 -1.23 16 26 C 0.08 1.02 4.33 37.16 0.16 1.18 16 27 O -0.39 -4.20 9.28 -35.23 -0.33 -4.53 16 28 C 0.03 0.27 11.01 101.05 1.11 1.39 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.79 5.62 -51.93 -0.29 0.50 16 33 H 0.07 0.73 4.63 -51.93 -0.24 0.49 16 34 H 0.10 1.13 4.98 -51.93 -0.26 0.87 16 35 H 0.11 1.55 8.10 -51.93 -0.42 1.13 16 36 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 37 H 0.10 2.04 5.81 -51.92 -0.30 1.73 16 38 H 0.05 0.84 5.17 -51.93 -0.27 0.57 16 39 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 40 H 0.03 0.77 5.90 -51.93 -0.31 0.47 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.07 0.64 4.52 -51.93 -0.23 0.41 16 44 H 0.08 0.75 7.39 -51.93 -0.38 0.36 16 45 H 0.06 0.62 7.62 -51.92 -0.40 0.23 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 48 H 0.06 0.59 5.87 -51.93 -0.30 0.29 16 49 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 53 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -31.60 399.67 -7.77 -39.36 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.67 Total: 1.02 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 0.45 Total: 2.62 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.16 Total: -55.64 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.70 Total: -9.20 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.60 -7.77 -39.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649086639.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.145 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds