Wall clock time and date at job start Sat Apr 11 2020 06:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99329 * 2 1 4 4 C 1.53004 * 109.46796 * 184.73764 * 3 2 1 5 5 N 1.46500 * 109.47026 * 185.03962 * 4 3 2 6 6 C 1.36741 * 127.13788 * 273.53359 * 5 4 3 7 7 C 1.50704 * 126.34914 * 0.05096 * 6 5 4 8 8 H 1.08997 * 109.46804 * 345.00401 * 7 6 5 9 9 C 1.53004 * 109.46777 * 105.00233 * 7 6 5 10 10 O 1.42898 * 109.47244 * 225.00280 * 7 6 5 11 11 N 1.30295 * 107.30478 * 180.02562 * 6 5 4 12 12 N 1.28526 * 110.05512 * 359.72632 * 11 6 5 13 13 C 1.31219 * 109.85694 * 0.45031 * 12 11 6 14 14 N 1.38578 * 126.47040 * 179.82175 * 13 12 11 15 15 C 1.46901 * 111.00062 * 43.07810 * 14 13 12 16 16 C 1.50699 * 109.47618 * 72.05719 * 15 14 13 17 17 H 1.08001 * 119.99732 * 5.54165 * 16 15 14 18 18 C 1.37875 * 120.00050 * 185.54328 * 16 15 14 19 19 N 1.31512 * 120.00220 * 354.37543 * 18 16 15 20 20 Si 1.86804 * 119.99624 * 174.37352 * 18 16 15 21 21 H 1.48500 * 109.46681 * 94.97684 * 20 18 16 22 22 H 1.48498 * 109.46994 * 214.97043 * 20 18 16 23 23 H 1.48496 * 109.47255 * 334.97247 * 20 18 16 24 24 C 1.46897 * 111.00107 * 279.12038 * 14 13 12 25 25 C 1.53004 * 109.46963 * 190.00278 * 24 14 13 26 26 C 1.53001 * 109.47028 * 179.97438 * 25 24 14 27 27 C 1.53005 * 109.46893 * 64.99849 * 26 25 24 28 28 C 1.53001 * 109.47209 * 184.99580 * 26 25 24 29 29 H 1.08994 * 109.47454 * 64.76260 * 1 2 3 30 30 H 1.09007 * 109.46671 * 184.76208 * 1 2 3 31 31 H 1.09000 * 109.47430 * 304.75553 * 1 2 3 32 32 H 1.08992 * 109.47319 * 64.73302 * 3 2 1 33 33 H 1.09003 * 109.47071 * 304.73330 * 3 2 1 34 34 H 1.09007 * 109.46691 * 65.04387 * 4 3 2 35 35 H 1.08994 * 109.47153 * 305.04079 * 4 3 2 36 36 H 1.08997 * 109.46813 * 60.00633 * 9 7 6 37 37 H 1.09000 * 109.46458 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.46863 * 299.99809 * 9 7 6 39 39 H 0.96691 * 114.00005 * 299.99895 * 10 7 6 40 40 H 1.08999 * 109.47144 * 192.06211 * 15 14 13 41 41 H 1.08996 * 109.46899 * 312.05505 * 15 14 13 42 42 H 0.96996 * 119.99817 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47394 * 70.00268 * 24 14 13 44 44 H 1.09000 * 109.47055 * 309.99418 * 24 14 13 45 45 H 1.08995 * 109.47203 * 60.00284 * 25 24 14 46 46 H 1.09003 * 109.47025 * 299.99522 * 25 24 14 47 47 H 1.08995 * 109.47446 * 304.99929 * 26 25 24 48 48 H 1.09008 * 109.46914 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.47366 * 299.99746 * 27 26 25 50 50 H 1.08999 * 109.46737 * 60.00233 * 27 26 25 51 51 H 1.09003 * 109.46791 * 60.00272 * 28 26 25 52 52 H 1.08998 * 109.47301 * 180.02562 * 28 26 25 53 53 H 1.08995 * 109.47201 * 300.00499 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5309 1.1869 -0.1191 5 7 4.1354 2.5159 0.0016 6 6 4.3409 3.4235 -1.0003 7 6 3.9840 3.2457 -2.4536 8 1 3.7796 2.1935 -2.6514 9 6 2.7410 4.0766 -2.7788 10 8 5.0743 3.6806 -3.2685 11 7 4.9019 4.4708 -0.4654 12 7 5.0584 4.2903 0.7974 13 6 4.6106 3.1046 1.1371 14 7 4.6143 2.5562 2.4098 15 6 4.1955 3.5464 3.4109 16 6 2.7165 3.8021 3.2765 17 1 2.1281 3.2176 2.5848 18 6 2.1145 4.7824 4.0365 19 7 2.8059 5.4183 4.9569 20 14 0.3167 5.2072 3.7589 21 1 -0.5254 4.4446 4.7152 22 1 0.1134 6.6627 3.9720 23 1 -0.0669 4.8521 2.3690 24 6 5.9332 1.9997 2.7394 25 6 5.8359 1.1898 4.0339 26 6 7.2095 0.6096 4.3769 27 6 8.1822 1.7498 4.6848 28 6 7.0874 -0.3010 5.6003 29 1 -0.3634 0.4381 -0.9295 30 1 -0.3633 -1.0242 0.0853 31 1 -0.3634 0.5858 0.8443 32 1 1.7572 1.8159 0.9293 33 1 1.6229 1.8756 -0.8446 34 1 3.7870 0.7579 -1.0880 35 1 3.9083 0.5425 0.6748 36 1 2.9455 5.1288 -2.5810 37 1 2.4827 3.9476 -3.8299 38 1 1.9094 3.7448 -2.1572 39 1 5.3117 4.6097 -3.1447 40 1 4.4092 3.1659 4.4097 41 1 4.7410 4.4766 3.2521 42 1 2.3823 6.1077 5.4918 43 1 6.6476 2.8122 2.8720 44 1 6.2666 1.3511 1.9293 45 1 5.1216 0.3773 3.9013 46 1 5.5025 1.8384 4.8440 47 1 7.5820 0.0329 3.5304 48 1 9.1610 1.3364 4.9288 49 1 8.2692 2.3985 3.8133 50 1 7.8097 2.3265 5.5314 51 1 6.3944 -1.1133 5.3809 52 1 8.0660 -0.7140 5.8450 53 1 6.7149 0.2757 6.4468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649105647.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:09 Heat of formation + Delta-G solvation = -23.078717 kcal Electronic energy + Delta-G solvation = -32083.017153 eV Core-core repulsion = 27991.346877 eV Total energy + Delta-G solvation = -4091.670276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.53294 -38.02873 -37.89949 -37.24531 -35.43416 -34.85981 -32.63836 -31.39172 -29.73994 -29.38837 -28.24585 -27.01074 -26.60373 -26.25972 -24.00040 -23.48015 -23.01596 -22.34634 -20.38929 -19.94906 -19.47893 -17.60709 -16.67620 -16.58107 -16.20637 -16.08814 -15.72745 -15.48114 -15.09668 -15.01407 -14.65757 -14.56129 -14.46227 -13.98298 -13.59075 -13.42400 -13.26263 -12.85073 -12.68451 -12.27364 -12.25775 -12.14188 -12.04682 -11.81429 -11.72345 -11.50984 -11.41370 -11.32162 -11.10271 -11.06914 -10.81151 -10.75835 -10.62131 -10.50247 -10.47027 -10.17320 -10.05757 -9.97859 -9.78303 -9.73105 -9.39634 -8.60471 -8.45839 -7.71555 -6.10203 -4.10647 2.10403 2.52478 3.23661 3.30833 3.32367 3.35715 3.74394 4.21521 4.30845 4.43287 4.52176 4.66886 4.80883 4.93208 4.99228 5.05223 5.12139 5.15752 5.17420 5.26179 5.26753 5.35125 5.46932 5.51188 5.54526 5.58507 5.61676 5.73561 5.76535 5.79133 5.82722 5.88464 5.95600 5.99214 6.02846 6.09612 6.14836 6.25976 6.30869 6.38513 6.46681 6.60862 6.70288 6.85328 6.99293 7.17146 7.38027 7.49270 7.58743 7.94915 8.04924 8.30702 8.90918 9.26777 9.51935 11.00670 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006612 B = 0.004942 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4233.714984 B = 5664.277166 C = 6977.440738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.120 3.880 5 N -0.466 5.466 6 C 0.118 3.882 7 C 0.204 3.796 8 H 0.108 0.892 9 C -0.178 4.178 10 O -0.550 6.550 11 N -0.279 5.279 12 N -0.307 5.307 13 C 0.406 3.594 14 N -0.471 5.471 15 C 0.199 3.801 16 C -0.509 4.509 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.277 1.277 24 C 0.068 3.932 25 C -0.111 4.111 26 C -0.094 4.094 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.388 0.612 40 H 0.046 0.954 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.053 0.947 52 H 0.049 0.951 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -11.167 -9.758 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.031 4.031 4 C -0.004 4.004 5 N -0.162 5.162 6 C -0.149 4.149 7 C 0.142 3.858 8 H 0.126 0.874 9 C -0.237 4.237 10 O -0.355 6.355 11 N -0.121 5.121 12 N -0.149 5.149 13 C 0.050 3.950 14 N -0.197 5.197 15 C 0.076 3.924 16 C -0.548 4.548 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.203 1.203 24 C -0.060 4.060 25 C -0.148 4.148 26 C -0.113 4.113 27 C -0.208 4.208 28 C -0.202 4.202 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.237 0.763 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.072 0.928 52 H 0.069 0.931 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.260 -10.816 -9.676 14.687 hybrid contribution -1.520 0.449 0.200 1.598 sum 0.740 -10.367 -9.476 14.064 Atomic orbital electron populations 1.22754 0.80382 1.02798 1.00335 1.87756 1.20212 1.27020 1.95615 1.22830 0.92639 0.85242 1.02376 1.21409 0.92505 0.81645 1.04824 1.46127 1.46610 1.15376 1.08128 1.25417 1.06475 0.88844 0.94184 1.19927 0.86694 0.99575 0.79599 0.87404 1.22474 0.97235 1.01596 1.02361 1.86517 1.52160 1.33574 1.63228 1.73823 1.15773 1.20233 1.02225 1.74678 1.21964 1.13698 1.04606 1.22545 0.95806 0.88933 0.87699 1.59121 1.25913 1.37503 0.97211 1.19978 0.96372 0.87939 0.88082 1.20945 0.92677 1.18103 1.23039 0.92750 1.24871 0.98050 0.95931 0.95003 1.69933 1.36514 1.24959 1.21383 0.86577 0.85211 0.77917 0.78253 1.20632 1.20968 1.20253 1.22119 0.88640 0.97757 0.97450 1.21688 0.96076 0.99842 0.97225 1.21074 0.95788 0.96471 0.97945 1.21911 0.98389 0.98362 1.02098 1.21812 1.01056 0.99298 0.98035 0.94160 0.89443 0.93495 0.90729 0.93173 0.88942 0.87161 0.90951 0.90784 0.91522 0.76294 0.93603 0.95920 0.92756 0.93674 0.92462 0.91270 0.90425 0.91741 0.93274 0.92475 0.92351 0.92796 0.93145 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.23 10.70 -35.23 -0.38 -5.60 16 3 C 0.05 0.67 6.26 37.16 0.23 0.90 16 4 C 0.12 1.68 6.29 -4.04 -0.03 1.66 16 5 N -0.47 -8.15 2.81 -114.08 -0.32 -8.47 16 6 C 0.12 2.02 6.93 -154.01 -1.07 0.95 16 7 C 0.20 2.59 4.00 -27.88 -0.11 2.47 16 8 H 0.11 1.17 7.04 -51.93 -0.37 0.80 16 9 C -0.18 -1.99 9.52 37.16 0.35 -1.64 16 10 O -0.55 -7.00 13.33 -35.23 -0.47 -7.47 16 11 N -0.28 -5.74 12.10 32.99 0.40 -5.34 16 12 N -0.31 -7.15 11.49 30.31 0.35 -6.80 16 13 C 0.41 8.58 6.11 -318.88 -1.95 6.63 16 14 N -0.47 -9.86 4.48 -175.88 -0.79 -10.65 16 15 C 0.20 5.04 4.55 -4.98 -0.02 5.02 16 16 C -0.51 -13.99 8.83 -34.44 -0.30 -14.30 16 17 H 0.05 1.49 7.07 -52.49 -0.37 1.12 16 18 C 0.06 1.79 5.45 -17.82 -0.10 1.70 16 19 N -0.89 -26.06 13.30 55.43 0.74 -25.32 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.07 1.18 4.65 -3.82 -0.02 1.17 16 25 C -0.11 -1.71 4.65 -26.73 -0.12 -1.83 16 26 C -0.09 -1.18 2.92 -90.62 -0.26 -1.44 16 27 C -0.15 -1.90 8.95 37.16 0.33 -1.57 16 28 C -0.14 -1.62 9.19 37.16 0.34 -1.28 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.33 7.39 -51.93 -0.38 0.94 16 33 H 0.05 0.65 7.77 -51.93 -0.40 0.25 16 34 H 0.09 1.03 7.25 -51.93 -0.38 0.65 16 35 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16 39 H 0.39 4.27 8.97 45.56 0.41 4.68 16 40 H 0.05 1.18 5.94 -51.93 -0.31 0.88 16 41 H 0.02 0.65 7.51 -51.93 -0.39 0.26 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.05 0.84 6.55 -51.93 -0.34 0.50 16 44 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.37 6.28 -51.93 -0.33 1.04 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 49 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 53 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 426.68 15.07 6.43 6.43 Total: -1.00 -32.80 426.68 -9.32 -42.12 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.65 Total: 4.60 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.61 Total: -0.09 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.38 Total: -56.58 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.85 Total: -13.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -32.80 -9.32 -42.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649105647.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.041 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds