Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99329 * 2 1 4 4 C 1.53004 * 109.46796 * 184.73764 * 3 2 1 5 5 N 1.46500 * 109.47026 * 185.03962 * 4 3 2 6 6 C 1.36741 * 127.13788 * 273.53359 * 5 4 3 7 7 C 1.50704 * 126.34914 * 0.05096 * 6 5 4 8 8 H 1.08997 * 109.46804 * 345.00401 * 7 6 5 9 9 C 1.53004 * 109.46777 * 105.00233 * 7 6 5 10 10 O 1.42898 * 109.47244 * 225.00280 * 7 6 5 11 11 N 1.30295 * 107.30478 * 180.02562 * 6 5 4 12 12 N 1.28526 * 110.05512 * 359.72632 * 11 6 5 13 13 C 1.31219 * 109.85694 * 0.45031 * 12 11 6 14 14 N 1.38578 * 126.47040 * 179.82175 * 13 12 11 15 15 C 1.46901 * 111.00062 * 43.07810 * 14 13 12 16 16 C 1.50699 * 109.47618 * 72.05719 * 15 14 13 17 17 H 1.08001 * 119.99732 * 5.54165 * 16 15 14 18 18 C 1.37875 * 120.00050 * 185.54328 * 16 15 14 19 19 N 1.31512 * 120.00220 * 354.37543 * 18 16 15 20 20 Si 1.86804 * 119.99624 * 174.37352 * 18 16 15 21 21 H 1.48500 * 109.46681 * 94.97684 * 20 18 16 22 22 H 1.48498 * 109.46994 * 214.97043 * 20 18 16 23 23 H 1.48496 * 109.47255 * 334.97247 * 20 18 16 24 24 C 1.46897 * 111.00107 * 279.12038 * 14 13 12 25 25 C 1.53004 * 109.46963 * 190.00278 * 24 14 13 26 26 C 1.53001 * 109.47028 * 179.97438 * 25 24 14 27 27 C 1.53005 * 109.46893 * 64.99849 * 26 25 24 28 28 C 1.53001 * 109.47209 * 184.99580 * 26 25 24 29 29 H 1.08994 * 109.47454 * 64.76260 * 1 2 3 30 30 H 1.09007 * 109.46671 * 184.76208 * 1 2 3 31 31 H 1.09000 * 109.47430 * 304.75553 * 1 2 3 32 32 H 1.08992 * 109.47319 * 64.73302 * 3 2 1 33 33 H 1.09003 * 109.47071 * 304.73330 * 3 2 1 34 34 H 1.09007 * 109.46691 * 65.04387 * 4 3 2 35 35 H 1.08994 * 109.47153 * 305.04079 * 4 3 2 36 36 H 1.08997 * 109.46813 * 60.00633 * 9 7 6 37 37 H 1.09000 * 109.46458 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.46863 * 299.99809 * 9 7 6 39 39 H 0.96691 * 114.00005 * 299.99895 * 10 7 6 40 40 H 1.08999 * 109.47144 * 192.06211 * 15 14 13 41 41 H 1.08996 * 109.46899 * 312.05505 * 15 14 13 42 42 H 0.96996 * 119.99817 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47394 * 70.00268 * 24 14 13 44 44 H 1.09000 * 109.47055 * 309.99418 * 24 14 13 45 45 H 1.08995 * 109.47203 * 60.00284 * 25 24 14 46 46 H 1.09003 * 109.47025 * 299.99522 * 25 24 14 47 47 H 1.08995 * 109.47446 * 304.99929 * 26 25 24 48 48 H 1.09008 * 109.46914 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.47366 * 299.99746 * 27 26 25 50 50 H 1.08999 * 109.46737 * 60.00233 * 27 26 25 51 51 H 1.09003 * 109.46791 * 60.00272 * 28 26 25 52 52 H 1.08998 * 109.47301 * 180.02562 * 28 26 25 53 53 H 1.08995 * 109.47201 * 300.00499 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5309 1.1869 -0.1191 5 7 4.1354 2.5159 0.0016 6 6 4.3409 3.4235 -1.0003 7 6 3.9840 3.2457 -2.4536 8 1 3.7796 2.1935 -2.6514 9 6 2.7410 4.0766 -2.7788 10 8 5.0743 3.6806 -3.2685 11 7 4.9019 4.4708 -0.4654 12 7 5.0584 4.2903 0.7974 13 6 4.6106 3.1046 1.1371 14 7 4.6143 2.5562 2.4098 15 6 4.1955 3.5464 3.4109 16 6 2.7165 3.8021 3.2765 17 1 2.1281 3.2176 2.5848 18 6 2.1145 4.7824 4.0365 19 7 2.8059 5.4183 4.9569 20 14 0.3167 5.2072 3.7589 21 1 -0.5254 4.4446 4.7152 22 1 0.1134 6.6627 3.9720 23 1 -0.0669 4.8521 2.3690 24 6 5.9332 1.9997 2.7394 25 6 5.8359 1.1898 4.0339 26 6 7.2095 0.6096 4.3769 27 6 8.1822 1.7498 4.6848 28 6 7.0874 -0.3010 5.6003 29 1 -0.3634 0.4381 -0.9295 30 1 -0.3633 -1.0242 0.0853 31 1 -0.3634 0.5858 0.8443 32 1 1.7572 1.8159 0.9293 33 1 1.6229 1.8756 -0.8446 34 1 3.7870 0.7579 -1.0880 35 1 3.9083 0.5425 0.6748 36 1 2.9455 5.1288 -2.5810 37 1 2.4827 3.9476 -3.8299 38 1 1.9094 3.7448 -2.1572 39 1 5.3117 4.6097 -3.1447 40 1 4.4092 3.1659 4.4097 41 1 4.7410 4.4766 3.2521 42 1 2.3823 6.1077 5.4918 43 1 6.6476 2.8122 2.8720 44 1 6.2666 1.3511 1.9293 45 1 5.1216 0.3773 3.9013 46 1 5.5025 1.8384 4.8440 47 1 7.5820 0.0329 3.5304 48 1 9.1610 1.3364 4.9288 49 1 8.2692 2.3985 3.8133 50 1 7.8097 2.3265 5.5314 51 1 6.3944 -1.1133 5.3809 52 1 8.0660 -0.7140 5.8450 53 1 6.7149 0.2757 6.4468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649105647.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -44.915889 kcal Electronic energy + Delta-G solvation = -32083.964084 eV Core-core repulsion = 27991.346877 eV Total energy + Delta-G solvation = -4092.617207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.02402 -39.34053 -39.07498 -38.32914 -36.76027 -36.19253 -34.73111 -32.50423 -30.95538 -30.71172 -29.95440 -28.20303 -28.00726 -27.28433 -25.20706 -25.02152 -24.58866 -23.70218 -21.65578 -21.40350 -20.75071 -18.94576 -18.49888 -17.82647 -17.58094 -17.32120 -17.04690 -16.79810 -16.51643 -16.26023 -15.98747 -15.78213 -15.64310 -15.46171 -14.81722 -14.63682 -14.42289 -14.31548 -13.91820 -13.67903 -13.65411 -13.37490 -13.10926 -13.08253 -12.93849 -12.86644 -12.71380 -12.64994 -12.56756 -12.38549 -12.26552 -12.23918 -12.04372 -11.81972 -11.61923 -11.55108 -11.44917 -11.44783 -11.38139 -11.16355 -10.76823 -10.62065 -10.16627 -9.44144 -8.26781 -6.34385 0.67422 1.17286 1.29439 1.31999 1.40874 1.81045 2.30270 2.61173 2.93360 3.07419 3.20308 3.38997 3.56494 3.80206 3.83546 3.84601 3.95915 4.02235 4.08177 4.09920 4.17394 4.26572 4.35382 4.45311 4.49172 4.49936 4.54565 4.58361 4.63092 4.75898 4.77530 4.81580 4.81661 4.90350 4.94607 5.02763 5.02956 5.07667 5.14223 5.18448 5.19796 5.26069 5.32754 5.46517 5.53223 5.53411 5.66243 5.89718 5.99679 6.20924 6.42019 6.54924 6.75346 7.32112 7.73531 8.84619 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006612 B = 0.004942 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4233.714984 B = 5664.277166 C = 6977.440738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.057 3.943 4 C 0.116 3.884 5 N -0.461 5.461 6 C 0.141 3.859 7 C 0.207 3.793 8 H 0.139 0.861 9 C -0.173 4.173 10 O -0.552 6.552 11 N -0.314 5.314 12 N -0.356 5.356 13 C 0.386 3.614 14 N -0.465 5.465 15 C 0.221 3.779 16 C -0.518 4.518 17 H 0.051 0.949 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.956 3.044 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.070 3.930 25 C -0.101 4.101 26 C -0.087 4.087 27 C -0.150 4.150 28 C -0.142 4.142 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.034 0.966 41 H -0.021 1.021 42 H 0.265 0.735 43 H 0.027 0.973 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.042 0.958 50 H 0.043 0.957 51 H 0.060 0.940 52 H 0.070 0.930 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -13.632 -12.103 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C -0.021 4.021 4 C -0.006 4.006 5 N -0.157 5.157 6 C -0.128 4.128 7 C 0.144 3.856 8 H 0.156 0.844 9 C -0.232 4.232 10 O -0.358 6.358 11 N -0.155 5.155 12 N -0.198 5.198 13 C 0.029 3.971 14 N -0.191 5.191 15 C 0.096 3.904 16 C -0.556 4.556 17 H 0.069 0.931 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.781 3.219 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.057 4.057 25 C -0.139 4.139 26 C -0.106 4.106 27 C -0.207 4.207 28 C -0.199 4.199 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.244 0.756 40 H 0.051 0.949 41 H -0.003 1.003 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.079 0.921 52 H 0.089 0.911 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.217 -13.305 -12.038 17.984 hybrid contribution -1.182 1.181 0.834 1.868 sum 0.034 -12.124 -11.203 16.508 Atomic orbital electron populations 1.22987 0.78923 1.04311 1.00768 1.87744 1.21783 1.26157 1.95602 1.22615 0.92921 0.85713 1.00880 1.21713 0.92186 0.79794 1.06957 1.46262 1.46028 1.16491 1.06903 1.26451 1.03282 0.87293 0.95787 1.20337 0.87137 1.01614 0.76468 0.84408 1.22456 0.96153 1.00328 1.04234 1.86510 1.52286 1.34302 1.62692 1.73721 1.18121 1.22200 1.01425 1.74565 1.23663 1.15333 1.06280 1.22525 0.96947 0.89227 0.88388 1.59068 1.27704 1.35604 0.96680 1.19473 0.95058 0.87034 0.88785 1.21201 0.93661 1.18135 1.22618 0.93061 1.25727 1.02545 0.95845 0.94683 1.70058 1.38448 1.25587 1.22332 0.85576 0.80089 0.77675 0.78575 1.19045 1.20799 1.19684 1.22225 0.86759 0.97509 0.99170 1.21622 0.98266 0.99017 0.95031 1.21055 0.93607 0.96601 0.99368 1.21904 0.99661 0.98222 1.00911 1.21788 1.02391 0.98962 0.96752 0.92272 0.87150 0.94826 0.95033 0.91386 0.84830 0.87545 0.92396 0.87688 0.91756 0.75579 0.94853 1.00263 0.92624 0.95433 0.90373 0.90839 0.93370 0.89996 0.90925 0.93878 0.93790 0.92058 0.91150 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.74 16 2 O -0.39 -9.71 10.70 -148.98 -1.59 -11.30 16 3 C 0.06 1.53 6.26 71.98 0.45 1.98 16 4 C 0.12 3.00 6.29 86.38 0.54 3.54 16 5 N -0.46 -15.81 2.81 -514.84 -1.45 -17.25 16 6 C 0.14 4.66 6.93 137.64 0.95 5.62 16 7 C 0.21 4.61 4.00 29.85 0.12 4.73 16 8 H 0.14 2.31 7.04 -2.39 -0.02 2.29 16 9 C -0.17 -3.37 9.52 71.98 0.69 -2.68 16 10 O -0.55 -12.61 13.33 -148.98 -1.99 -14.60 16 11 N -0.31 -13.19 12.10 -49.53 -0.60 -13.79 16 12 N -0.36 -17.34 11.49 -58.01 -0.67 -18.01 16 13 C 0.39 16.82 6.11 260.11 1.59 18.41 16 14 N -0.46 -20.31 4.48 -710.37 -3.18 -23.50 16 15 C 0.22 11.91 4.55 85.56 0.39 12.30 16 16 C -0.52 -29.61 8.83 25.60 0.23 -29.39 16 17 H 0.05 2.91 7.07 -2.91 -0.02 2.89 16 18 C 0.01 0.64 5.45 84.65 0.46 1.10 16 19 N -0.92 -56.29 13.30 21.45 0.29 -56.00 16 20 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 C 0.07 2.54 4.65 86.31 0.40 2.95 16 25 C -0.10 -3.22 4.65 30.60 0.14 -3.08 16 26 C -0.09 -2.13 2.92 -10.79 -0.03 -2.17 16 27 C -0.15 -3.81 8.95 71.98 0.64 -3.17 16 28 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.03 1.13 7.39 -2.39 -0.02 1.11 16 33 H 0.07 1.57 7.77 -2.39 -0.02 1.55 16 34 H 0.13 2.39 7.25 -2.38 -0.02 2.37 16 35 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.29 7.77 -2.39 -0.02 1.28 16 39 H 0.39 8.07 8.97 -74.06 -0.66 7.41 16 40 H 0.03 1.86 5.94 -2.39 -0.01 1.85 16 41 H -0.02 -1.28 7.51 -2.39 -0.02 -1.30 16 42 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.03 1.09 6.55 -2.39 -0.02 1.08 16 44 H 0.08 2.49 8.05 -2.39 -0.02 2.47 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.81 6.28 -2.39 -0.01 1.80 16 47 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.07 1.49 8.14 -2.38 -0.02 1.48 16 49 H 0.04 1.20 6.57 -2.39 -0.02 1.18 16 50 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 53 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -75.48 426.68 1.55 -73.94 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.23 Total: 23.86 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 8.48 Total: 9.56 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -5.61 Total: -128.55 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -3.58 Total: -25.90 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.48 1.55 -73.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649105647.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.022 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds