Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47194 * 2 1 4 4 N 1.46504 * 109.47227 * 239.99992 * 2 1 3 5 5 C 1.34768 * 120.00079 * 84.99721 * 4 2 1 6 6 O 1.21587 * 120.00255 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00048 * 180.02562 * 5 4 2 8 8 C 1.47747 * 125.82187 * 359.90996 * 7 5 4 9 9 C 1.54912 * 104.84413 * 155.83048 * 8 7 5 10 10 C 1.55162 * 101.58052 * 37.09228 * 9 8 7 11 11 O 1.42905 * 110.87138 * 82.93395 * 10 9 8 12 12 C 1.50701 * 110.72004 * 206.13885 * 10 9 8 13 13 H 1.07998 * 119.99871 * 118.77108 * 12 10 9 14 14 C 1.37875 * 119.99545 * 298.77349 * 12 10 9 15 15 N 1.31518 * 119.99944 * 183.38990 * 14 12 10 16 16 Si 1.86803 * 120.00512 * 3.38768 * 14 12 10 17 17 H 1.48499 * 109.46992 * 85.27725 * 16 14 12 18 18 H 1.48499 * 109.47358 * 205.28427 * 16 14 12 19 19 H 1.48506 * 109.46701 * 325.28302 * 16 14 12 20 20 C 1.47024 * 125.64959 * 180.02562 * 7 5 4 21 21 C 1.53000 * 109.47367 * 119.99866 * 2 1 3 22 22 H 1.09009 * 109.48485 * 300.20888 * 21 2 1 23 23 C 1.53049 * 109.48671 * 60.25302 * 21 2 1 24 24 N 1.46963 * 109.35999 * 178.37269 * 23 21 2 25 25 C 1.46905 * 110.99887 * 176.81547 * 24 23 21 26 26 C 1.46962 * 110.87766 * 300.67737 * 24 23 21 27 27 C 1.53049 * 109.36658 * 59.32653 * 26 24 23 28 28 N 1.46958 * 109.49096 * 180.14767 * 21 2 1 29 29 C 1.46904 * 111.00012 * 56.83934 * 28 21 2 30 30 H 1.09003 * 109.46771 * 175.73245 * 1 2 3 31 31 H 1.09001 * 109.47376 * 295.73005 * 1 2 3 32 32 H 1.08997 * 109.47412 * 55.73313 * 1 2 3 33 33 H 0.97003 * 119.99699 * 264.99640 * 4 2 1 34 34 H 1.08996 * 110.28859 * 37.02201 * 8 7 5 35 35 H 1.09000 * 110.52630 * 274.75361 * 8 7 5 36 36 H 1.09000 * 110.99969 * 279.02555 * 9 8 7 37 37 H 1.08994 * 111.03931 * 155.18243 * 9 8 7 38 38 H 0.96703 * 113.99590 * 184.93509 * 11 10 9 39 39 H 0.96993 * 120.00396 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.88353 * 61.60486 * 20 7 5 41 41 H 1.09005 * 109.87749 * 300.59133 * 20 7 5 42 42 H 1.08994 * 109.48986 * 298.33120 * 23 21 2 43 43 H 1.08992 * 109.48729 * 58.40644 * 23 21 2 44 44 H 1.08993 * 109.47155 * 59.99178 * 25 24 23 45 45 H 1.09001 * 109.47079 * 179.97438 * 25 24 23 46 46 H 1.08999 * 109.46521 * 299.99641 * 25 24 23 47 47 H 1.09007 * 109.48528 * 179.29247 * 26 24 23 48 48 H 1.08995 * 109.48699 * 299.33177 * 26 24 23 49 49 H 1.09001 * 109.48611 * 61.56024 * 27 26 24 50 50 H 1.08995 * 109.49213 * 181.60996 * 27 26 24 51 51 H 1.09005 * 109.47021 * 52.51693 * 29 28 21 52 52 H 1.09001 * 109.46996 * 172.51420 * 29 28 21 53 53 H 1.08994 * 109.47399 * 292.51633 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4117 7 7 2.5958 -0.6538 -3.4577 8 6 2.9837 -2.0773 -3.5365 9 6 2.8142 -2.4527 -5.0299 10 6 3.2841 -1.1520 -5.7333 11 8 4.7086 -1.1184 -5.8426 12 6 2.6439 -1.0189 -7.0910 13 1 2.0057 -0.1748 -7.3067 14 6 2.8729 -1.9749 -8.0578 15 7 2.3687 -1.8250 -9.2632 16 14 3.8993 -3.4830 -7.6557 17 1 3.0331 -4.5224 -7.0437 18 1 4.5064 -4.0153 -8.9020 19 1 4.9743 -3.1099 -6.7015 20 6 2.7836 -0.0443 -4.7824 21 6 2.0400 -0.7212 1.2492 22 1 1.6737 -0.2097 2.1394 23 6 1.5353 -2.1661 1.2465 24 7 2.0587 -2.8672 2.4272 25 6 1.5349 -4.2377 2.5008 26 6 3.5283 -2.8644 2.4293 27 6 4.0330 -1.4195 2.4321 28 7 3.5096 -0.7183 1.2514 29 6 4.0335 0.6521 1.1777 30 1 -0.3633 -1.0249 -0.0765 31 1 -0.3634 0.4461 0.9258 32 1 -0.3634 0.5786 -0.8492 33 1 2.2491 -1.6318 -1.1526 34 1 2.3243 -2.6837 -2.9157 35 1 4.0208 -2.2084 -3.2278 36 1 1.7713 -2.6677 -5.2626 37 1 3.4535 -3.2941 -5.2968 38 1 5.0557 -0.2925 -6.2066 39 1 2.5294 -2.4977 -9.9433 40 1 3.5230 0.7543 -4.7215 41 1 1.8361 0.3547 -5.1445 42 1 0.4457 -2.1707 1.2742 43 1 1.8786 -2.6694 0.3428 44 1 1.8305 -4.7882 1.6078 45 1 1.9384 -4.7340 3.3834 46 1 0.4472 -4.2079 2.5657 47 1 3.8917 -3.3782 3.3194 48 1 3.8942 -3.3761 1.5392 49 1 3.6897 -0.9162 3.3359 50 1 5.1226 -1.4149 2.4048 51 1 3.5775 1.2580 1.9608 52 1 5.1148 0.6356 1.3144 53 1 3.7969 1.0797 0.2034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649312382.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -67.309430 kcal Electronic energy + Delta-G solvation = -32268.292055 eV Core-core repulsion = 28174.703791 eV Total energy + Delta-G solvation = -4093.588263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61727 -40.58584 -39.25297 -36.99928 -36.11719 -35.90159 -34.50585 -32.90997 -31.52500 -30.53524 -29.96347 -29.60597 -27.08215 -26.30422 -25.56637 -24.24272 -23.81300 -22.23888 -21.66872 -21.19833 -20.23107 -19.62301 -18.96911 -17.43958 -17.09591 -16.97231 -16.70202 -16.54839 -16.47559 -15.97571 -15.80458 -15.56138 -15.25589 -15.02431 -14.93692 -14.81733 -14.73275 -14.28244 -14.03988 -14.03200 -13.56376 -13.47517 -13.33555 -13.20300 -13.09064 -12.97898 -12.85857 -12.74410 -12.54268 -12.38496 -12.34439 -12.17175 -12.15178 -11.81732 -11.75121 -11.34764 -11.23599 -10.95176 -10.79207 -10.35574 -10.17678 -9.44544 -9.42490 -9.26105 -8.35550 -6.51510 1.38221 1.47322 1.62863 1.69389 2.17781 2.40654 2.81033 2.91633 3.00272 3.03963 3.54477 3.61466 3.77472 3.82607 4.00803 4.03457 4.18540 4.20239 4.22937 4.30541 4.35443 4.40805 4.43942 4.50443 4.53318 4.57671 4.64917 4.70339 4.74588 4.76609 4.80222 4.86081 4.88497 4.94347 4.98926 5.01908 5.05211 5.06754 5.07129 5.12763 5.27272 5.45566 5.51996 5.60004 5.91538 5.94750 6.07600 6.11692 6.13451 6.14307 6.59468 7.03097 7.12437 7.29948 7.59326 8.78911 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.003073 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.891228 B = 9110.361724 C = 9679.138655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.070 0.930 4 N -0.711 5.711 5 C 0.719 3.281 6 O -0.639 6.639 7 N -0.632 5.632 8 C 0.116 3.884 9 C -0.127 4.127 10 C 0.219 3.781 11 O -0.572 6.572 12 C -0.552 4.552 13 H 0.034 0.966 14 C 0.036 3.964 15 N -0.938 5.938 16 Si 0.940 3.060 17 H -0.266 1.266 18 H -0.308 1.308 19 H -0.213 1.213 20 C 0.125 3.875 21 C 0.090 3.910 22 H 0.069 0.931 23 C 0.062 3.938 24 N -0.551 5.551 25 C 0.024 3.976 26 C 0.056 3.944 27 C 0.059 3.941 28 N -0.547 5.547 29 C 0.029 3.971 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.403 0.597 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.376 0.624 39 H 0.268 0.732 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.094 0.906 43 H 0.036 0.964 44 H 0.026 0.974 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.036 0.964 49 H 0.042 0.958 50 H 0.089 0.911 51 H 0.035 0.965 52 H 0.076 0.924 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -5.417 28.730 29.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.088 0.912 4 N -0.368 5.368 5 C 0.421 3.579 6 O -0.521 6.521 7 N -0.369 5.369 8 C -0.006 4.006 9 C -0.165 4.165 10 C 0.179 3.821 11 O -0.379 6.379 12 C -0.590 4.590 13 H 0.052 0.948 14 C -0.164 4.164 15 N -0.576 5.576 16 Si 0.765 3.235 17 H -0.192 1.192 18 H -0.237 1.237 19 H -0.135 1.135 20 C 0.001 3.999 21 C -0.019 4.019 22 H 0.087 0.913 23 C -0.066 4.066 24 N -0.275 5.275 25 C -0.124 4.124 26 C -0.072 4.072 27 C -0.069 4.069 28 N -0.272 5.272 29 C -0.119 4.119 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.241 0.759 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.225 0.775 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.054 0.946 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.053 0.947 52 H 0.095 0.905 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.449 -5.190 28.905 29.403 hybrid contribution 0.237 0.033 -1.219 1.242 sum 1.686 -5.158 27.686 28.213 Atomic orbital electron populations 1.22198 0.94199 1.02904 1.02560 1.20865 0.94227 0.96225 0.82421 0.91165 1.44921 1.70769 1.13792 1.07293 1.15576 0.77954 0.84083 0.80308 1.90848 1.59866 1.16245 1.85154 1.47651 1.68385 1.12070 1.08790 1.22345 1.00919 0.80622 0.96756 1.23005 1.01787 0.97459 0.94206 1.19779 0.79390 0.91741 0.91239 1.86434 1.21789 1.42826 1.86864 1.21428 1.30768 1.09617 0.97185 0.94754 1.25800 0.95381 1.01353 0.93885 1.70068 1.46392 1.36721 1.04447 0.86073 0.81256 0.78395 0.77775 1.19156 1.23652 1.13539 1.22272 0.99671 0.96503 0.81473 1.21895 0.87882 0.96338 0.95834 0.91316 1.22231 1.00456 0.92508 0.91417 1.62197 1.08204 1.17372 1.39762 1.22400 1.01206 0.87549 1.01197 1.22226 0.87165 0.96260 1.01591 1.22208 1.00134 0.93807 0.90719 1.62095 1.07023 1.16954 1.41143 1.22302 1.00713 0.88353 1.00508 0.90949 0.89569 0.94251 0.75924 0.88831 0.90374 0.90214 0.90205 0.77530 0.92276 0.92834 0.93896 0.88784 0.94630 0.95567 0.90280 0.90677 0.88746 0.94600 0.93936 0.89265 0.94694 0.90547 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.01 71.98 0.65 -2.50 16 2 C 0.17 3.70 1.88 44.99 0.08 3.78 16 3 H 0.07 1.88 5.95 -2.38 -0.01 1.86 16 4 N -0.71 -18.35 4.80 -457.82 -2.20 -20.55 16 5 C 0.72 25.65 8.46 179.06 1.51 27.16 16 6 O -0.64 -27.82 16.33 -3.99 -0.07 -27.88 16 7 N -0.63 -22.97 3.34 -828.91 -2.77 -25.74 16 8 C 0.12 3.54 6.59 86.79 0.57 4.11 16 9 C -0.13 -4.83 4.81 31.99 0.15 -4.68 16 10 C 0.22 9.66 0.67 -10.35 -0.01 9.66 16 11 O -0.57 -23.77 10.47 -148.98 -1.56 -25.33 16 12 C -0.55 -30.28 8.81 25.60 0.23 -30.05 16 13 H 0.03 2.13 7.82 -2.91 -0.02 2.11 16 14 C 0.04 2.02 5.47 84.65 0.46 2.48 16 15 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 16 Si 0.94 42.80 23.89 68.60 1.64 44.44 16 17 H -0.27 -11.29 7.09 99.48 0.71 -10.59 16 18 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 19 H -0.21 -9.13 5.48 99.48 0.55 -8.58 16 20 C 0.13 5.32 6.21 86.73 0.54 5.86 16 21 C 0.09 1.52 1.80 44.92 0.08 1.60 16 22 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 23 C 0.06 0.93 4.36 86.31 0.38 1.30 16 24 N -0.55 -7.58 4.97 -921.93 -4.58 -12.16 16 25 C 0.02 0.26 9.60 127.69 1.23 1.49 16 26 C 0.06 0.72 5.62 86.31 0.49 1.21 16 27 C 0.06 0.82 5.60 86.31 0.48 1.30 16 28 N -0.55 -9.67 4.62 -896.53 -4.14 -13.81 16 29 C 0.03 0.54 8.96 127.69 1.14 1.68 16 30 H 0.07 1.22 6.71 -2.39 -0.02 1.21 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.40 9.03 5.33 -92.71 -0.49 8.53 16 34 H 0.09 2.21 7.31 -2.39 -0.02 2.19 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 3.16 8.04 -2.39 -0.02 3.14 16 37 H 0.08 2.97 4.97 -2.39 -0.01 2.96 16 38 H 0.38 13.91 9.08 -74.05 -0.67 13.24 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 41 H 0.04 2.04 7.66 -2.38 -0.02 2.02 16 42 H 0.09 1.25 6.63 -2.39 -0.02 1.23 16 43 H 0.04 0.58 6.44 -2.39 -0.02 0.57 16 44 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 0.69 8.13 -2.39 -0.02 0.67 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.09 0.94 8.13 -2.38 -0.02 0.92 16 48 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.09 1.09 8.06 -2.39 -0.02 1.07 16 51 H 0.03 0.57 8.11 -2.38 -0.02 0.55 16 52 H 0.08 1.24 8.00 -2.39 -0.02 1.22 16 53 H 0.05 1.18 6.70 -2.39 -0.02 1.17 16 Total: -1.00 -71.36 394.47 -5.80 -77.16 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.42 Total: 36.31 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 7.99 Total: 24.40 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -13.38 Total: -129.10 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -1.63 Total: -53.21 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.64 Total: 44.44 kcal Total: -71.36 -5.80 -77.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649312382.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.851 kcal (2) G-P(sol) polarization free energy of solvation -71.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds