Wall clock time and date at job start Sat Apr 11 2020 06:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47169 * 2 1 4 4 N 1.46500 * 109.47034 * 240.00310 * 2 1 3 5 5 C 1.34775 * 120.00122 * 84.99636 * 4 2 1 6 6 O 1.21577 * 120.00181 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99644 * 179.97438 * 5 4 2 8 8 C 1.47425 * 125.65469 * 0.02599 * 7 5 4 9 9 C 1.54906 * 104.83695 * 204.08994 * 8 7 5 10 10 C 1.55155 * 101.58201 * 322.99115 * 9 8 7 11 11 O 1.42898 * 110.72107 * 277.13714 * 10 9 8 12 12 C 1.50696 * 110.72237 * 154.03861 * 10 9 8 13 13 H 1.08003 * 120.00338 * 267.11374 * 12 10 9 14 14 C 1.37882 * 119.99828 * 87.10895 * 12 10 9 15 15 N 1.31520 * 119.99881 * 174.79891 * 14 12 10 16 16 Si 1.86795 * 120.00111 * 354.80384 * 14 12 10 17 17 H 1.48503 * 109.47255 * 86.23733 * 16 14 12 18 18 H 1.48497 * 109.47450 * 206.24188 * 16 14 12 19 19 H 1.48498 * 109.46870 * 326.24258 * 16 14 12 20 20 C 1.47031 * 125.64616 * 179.71906 * 7 5 4 21 21 C 1.53002 * 109.47443 * 120.00266 * 2 1 3 22 22 H 1.09002 * 109.50127 * 301.19178 * 21 2 1 23 23 C 1.53046 * 109.48989 * 61.24430 * 21 2 1 24 24 N 1.46961 * 109.36593 * 178.37331 * 23 21 2 25 25 C 1.46893 * 111.00006 * 176.81291 * 24 23 21 26 26 C 1.46956 * 110.87388 * 300.68128 * 24 23 21 27 27 C 1.53046 * 109.36853 * 59.32026 * 26 24 23 28 28 N 1.46951 * 109.36209 * 301.59422 * 27 26 24 29 29 C 1.46906 * 110.99855 * 183.18679 * 28 27 26 30 30 H 1.08996 * 109.47500 * 61.99607 * 1 2 3 31 31 H 1.09002 * 109.47316 * 181.99860 * 1 2 3 32 32 H 1.09010 * 109.47148 * 301.99445 * 1 2 3 33 33 H 0.97007 * 119.99803 * 264.99956 * 4 2 1 34 34 H 1.09004 * 110.36349 * 322.93093 * 8 7 5 35 35 H 1.09005 * 110.36836 * 85.24881 * 8 7 5 36 36 H 1.09001 * 111.00255 * 81.06444 * 9 8 7 37 37 H 1.08994 * 111.00438 * 204.91279 * 9 8 7 38 38 H 0.96696 * 114.00467 * 174.78179 * 11 10 9 39 39 H 0.97000 * 119.99406 * 179.97438 * 15 14 12 40 40 H 1.08995 * 109.87954 * 298.39496 * 20 7 5 41 41 H 1.08999 * 109.87843 * 59.55994 * 20 7 5 42 42 H 1.09002 * 109.49122 * 298.33704 * 23 21 2 43 43 H 1.09000 * 109.48922 * 58.37969 * 23 21 2 44 44 H 1.09001 * 109.47525 * 59.99808 * 25 24 23 45 45 H 1.09004 * 109.47076 * 179.97438 * 25 24 23 46 46 H 1.09007 * 109.47270 * 299.99634 * 25 24 23 47 47 H 1.09002 * 109.48702 * 179.28959 * 26 24 23 48 48 H 1.09006 * 109.48857 * 299.32489 * 26 24 23 49 49 H 1.09008 * 109.48792 * 181.62782 * 27 26 24 50 50 H 1.08995 * 109.48758 * 61.56254 * 27 26 24 51 51 H 1.09002 * 109.47044 * 288.82882 * 29 28 27 52 52 H 1.09003 * 109.46795 * 48.82461 * 29 28 27 53 53 H 1.08994 * 109.47458 * 168.82396 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8582 1.1615 -2.4117 7 7 2.5966 -0.6534 -3.4575 8 6 2.9816 -2.0746 -3.5322 9 6 3.9645 -2.1570 -4.7267 10 6 3.3373 -1.1404 -5.7169 11 8 2.2817 -1.7479 -6.4643 12 6 4.3871 -0.5786 -6.6406 13 1 4.8941 0.3405 -6.3865 14 6 4.7005 -1.2382 -7.8102 15 7 5.5409 -0.6974 -8.6652 16 14 3.9314 -2.8997 -8.1804 17 1 2.6174 -2.7004 -8.8429 18 1 4.8272 -3.6706 -9.0795 19 1 3.7380 -3.6490 -6.9130 20 6 2.7786 -0.0454 -4.7837 21 6 2.0400 -0.7213 1.2492 22 1 1.6597 -0.2204 2.1394 23 6 1.5559 -2.1731 1.2340 24 7 2.0796 -2.8738 2.4149 25 6 1.5745 -4.2518 2.4763 26 6 3.5489 -2.8501 2.4291 27 6 4.0330 -1.3984 2.4442 28 7 3.5093 -0.6978 1.2634 29 6 4.0144 0.6804 1.2019 30 1 -0.3634 0.4825 -0.9073 31 1 -0.3634 -1.0270 0.0358 32 1 -0.3634 0.5445 0.8716 33 1 2.2490 -1.6318 -1.1527 34 1 3.4770 -2.3823 -2.6113 35 1 2.1054 -2.6957 -3.7184 36 1 4.9664 -1.8464 -4.4303 37 1 3.9782 -3.1600 -5.1529 38 1 1.8040 -1.1352 -7.0398 39 1 5.7616 -1.1616 -9.4878 40 1 1.8212 0.3133 -5.1615 41 1 3.4868 0.7806 -4.7187 42 1 0.4662 -2.1933 1.2528 43 1 1.9132 -2.6662 0.3300 44 1 1.8853 -4.7929 1.5826 45 1 1.9779 -4.7476 3.3593 46 1 0.4860 -4.2378 2.5325 47 1 3.9123 -3.3640 3.3190 48 1 3.9292 -3.3515 1.5390 49 1 5.1227 -1.3782 2.4255 50 1 3.6753 -0.9052 3.3480 51 1 3.5450 1.2746 1.9860 52 1 5.0949 0.6781 1.3455 53 1 3.7780 1.1109 0.2289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649312387.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:13 Heat of formation + Delta-G solvation = -72.756595 kcal Electronic energy + Delta-G solvation = -32235.169480 eV Core-core repulsion = 28141.345010 eV Total energy + Delta-G solvation = -4093.824470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62407 -40.59992 -39.30730 -37.01775 -36.29658 -35.91054 -34.45322 -32.92127 -31.46717 -30.52903 -29.95253 -29.61293 -27.09383 -26.30853 -25.57870 -24.23721 -23.80537 -22.20114 -21.59622 -21.22132 -20.21882 -19.65773 -19.02032 -17.48687 -17.09687 -16.98538 -16.76882 -16.62348 -16.44457 -15.97300 -15.80086 -15.54327 -15.28636 -15.23144 -14.94223 -14.79429 -14.56569 -14.22023 -14.03723 -13.92911 -13.67227 -13.43519 -13.33742 -13.23070 -13.15963 -12.97872 -12.77711 -12.73855 -12.53838 -12.37306 -12.30840 -12.22057 -12.15746 -11.82997 -11.75672 -11.34693 -11.25856 -11.18015 -10.63683 -10.41087 -10.16870 -9.43661 -9.42394 -9.26437 -8.33701 -6.48959 1.52609 1.53668 1.63473 1.74994 2.18435 2.45366 2.80749 2.91480 2.98459 3.06309 3.50717 3.61404 3.80663 3.83773 4.00285 4.07230 4.18595 4.20282 4.28651 4.30753 4.35221 4.40654 4.44517 4.49498 4.56485 4.57671 4.65314 4.69752 4.73596 4.77197 4.83283 4.85723 4.90221 4.96222 4.99739 5.03350 5.05071 5.06794 5.15753 5.20457 5.27550 5.44264 5.52707 5.60532 5.91020 5.94580 6.04989 6.12072 6.13558 6.14063 6.58540 6.94782 7.04561 7.29332 7.59954 8.79747 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.002977 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.764371 B = 9402.295557 C = 9804.468249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 H 0.068 0.932 4 N -0.712 5.712 5 C 0.718 3.282 6 O -0.640 6.640 7 N -0.632 5.632 8 C 0.112 3.888 9 C -0.119 4.119 10 C 0.221 3.779 11 O -0.561 6.561 12 C -0.551 4.551 13 H 0.036 0.964 14 C 0.025 3.975 15 N -0.939 5.939 16 Si 1.005 2.995 17 H -0.281 1.281 18 H -0.334 1.334 19 H -0.246 1.246 20 C 0.123 3.877 21 C 0.089 3.911 22 H 0.069 0.931 23 C 0.063 3.937 24 N -0.551 5.551 25 C 0.024 3.976 26 C 0.056 3.944 27 C 0.059 3.941 28 N -0.548 5.548 29 C 0.029 3.971 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.403 0.597 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.382 0.618 39 H 0.268 0.732 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.036 0.964 44 H 0.026 0.974 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.036 0.964 49 H 0.088 0.912 50 H 0.043 0.957 51 H 0.036 0.964 52 H 0.074 0.926 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.757 -8.302 26.281 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.087 0.913 4 N -0.368 5.368 5 C 0.420 3.580 6 O -0.522 6.522 7 N -0.369 5.369 8 C -0.010 4.010 9 C -0.157 4.157 10 C 0.181 3.819 11 O -0.370 6.370 12 C -0.589 4.589 13 H 0.054 0.946 14 C -0.175 4.175 15 N -0.576 5.576 16 Si 0.837 3.163 17 H -0.208 1.208 18 H -0.266 1.266 19 H -0.170 1.170 20 C -0.001 4.001 21 C -0.020 4.020 22 H 0.087 0.913 23 C -0.066 4.066 24 N -0.275 5.275 25 C -0.123 4.123 26 C -0.072 4.072 27 C -0.069 4.069 28 N -0.273 5.273 29 C -0.119 4.119 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.241 0.759 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.232 0.768 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.054 0.946 49 H 0.106 0.894 50 H 0.061 0.939 51 H 0.054 0.946 52 H 0.093 0.907 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.696 -7.937 26.532 29.027 hybrid contribution 0.224 0.192 -1.277 1.310 sum -8.472 -7.746 25.255 27.742 Atomic orbital electron populations 1.22194 0.93987 1.03184 1.02360 1.20870 0.94363 0.96167 0.82424 0.91345 1.44932 1.70749 1.13841 1.07281 1.15597 0.78047 0.84057 0.80331 1.90846 1.59962 1.16247 1.85151 1.47600 1.68396 1.12129 1.08774 1.22353 0.98295 0.81113 0.99268 1.23008 0.98259 1.00351 0.94112 1.19911 0.84422 0.89315 0.88301 1.86080 1.49194 1.41421 1.60281 1.21403 1.22038 1.09756 1.05723 0.94585 1.25922 0.94502 1.02090 0.94958 1.70098 1.36206 1.40609 1.10731 0.84835 0.75706 0.78192 0.77586 1.20772 1.26620 1.17041 1.22316 0.99190 0.96696 0.81926 1.21895 0.87811 0.96389 0.95917 0.91314 1.22235 1.00557 0.92366 0.91408 1.62190 1.08620 1.16911 1.39795 1.22403 1.01364 0.87368 1.01211 1.22219 0.87244 0.96139 1.01608 1.22208 1.00143 0.93837 0.90712 1.62095 1.07630 1.16361 1.41201 1.22301 1.00801 0.88321 1.00490 0.94140 0.90647 0.89812 0.75928 0.89204 0.90364 0.90613 0.89422 0.76842 0.92346 0.92591 0.94056 0.88624 0.94616 0.95542 0.90321 0.90576 0.88736 0.94614 0.89403 0.93900 0.94593 0.90684 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.21 71.98 0.66 -2.34 16 2 C 0.17 3.67 1.91 44.99 0.09 3.76 16 3 H 0.07 1.86 5.90 -2.39 -0.01 1.84 16 4 N -0.71 -18.28 4.81 -457.84 -2.20 -20.48 16 5 C 0.72 25.50 8.45 179.06 1.51 27.02 16 6 O -0.64 -27.83 16.33 -3.96 -0.06 -27.89 16 7 N -0.63 -22.74 3.33 -829.73 -2.76 -25.50 16 8 C 0.11 3.35 6.56 86.85 0.57 3.92 16 9 C -0.12 -4.45 5.84 31.98 0.19 -4.27 16 10 C 0.22 9.59 0.68 -10.35 -0.01 9.59 16 11 O -0.56 -22.66 8.80 -148.98 -1.31 -23.97 16 12 C -0.55 -30.00 8.82 25.60 0.23 -29.77 16 13 H 0.04 2.23 7.80 -2.91 -0.02 2.21 16 14 C 0.03 1.40 5.46 84.66 0.46 1.86 16 15 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 16 Si 1.01 46.30 24.86 68.60 1.71 48.00 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.33 -15.93 7.11 99.48 0.71 -15.22 16 19 H -0.25 -10.40 5.09 99.48 0.51 -9.89 16 20 C 0.12 5.18 6.22 86.73 0.54 5.72 16 21 C 0.09 1.53 1.80 44.92 0.08 1.61 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 C 0.06 0.92 4.37 86.31 0.38 1.30 16 24 N -0.55 -7.55 4.97 -921.93 -4.58 -12.13 16 25 C 0.02 0.25 9.60 127.69 1.23 1.48 16 26 C 0.06 0.74 5.62 86.31 0.49 1.23 16 27 C 0.06 0.85 5.60 86.31 0.48 1.34 16 28 N -0.55 -10.07 4.64 -896.56 -4.16 -14.23 16 29 C 0.03 0.57 8.96 127.69 1.14 1.71 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.16 6.40 -2.39 -0.02 1.15 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.40 8.97 5.25 -92.70 -0.49 8.48 16 34 H 0.09 2.18 7.30 -2.38 -0.02 2.16 16 35 H 0.08 2.14 8.14 -2.38 -0.02 2.13 16 36 H 0.08 2.95 8.04 -2.39 -0.02 2.93 16 37 H 0.09 3.21 6.12 -2.39 -0.01 3.19 16 38 H 0.38 13.91 9.01 -74.06 -0.67 13.24 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 41 H 0.04 1.96 7.65 -2.39 -0.02 1.94 16 42 H 0.10 1.22 6.51 -2.39 -0.02 1.20 16 43 H 0.04 0.58 6.40 -2.39 -0.02 0.56 16 44 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.08 0.67 8.13 -2.38 -0.02 0.65 16 46 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.09 0.97 8.13 -2.39 -0.02 0.95 16 48 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.09 1.16 8.06 -2.38 -0.02 1.14 16 50 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.04 0.62 8.11 -2.39 -0.02 0.60 16 52 H 0.07 1.33 8.00 -2.39 -0.02 1.31 16 53 H 0.05 1.23 6.67 -2.39 -0.02 1.21 16 Total: -1.00 -71.12 395.08 -5.48 -76.60 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.44 Total: 32.33 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 8.04 Total: 24.14 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -13.40 Total: -129.21 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -1.38 Total: -51.86 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.71 Total: 48.00 kcal Total: -71.12 -5.48 -76.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649312387.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.846 kcal (2) G-P(sol) polarization free energy of solvation -71.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds