Wall clock time and date at job start Sat Apr 11 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47183 * 2 1 4 4 N 1.46906 * 109.47036 * 119.99933 * 2 1 3 5 5 C 1.46901 * 110.99793 * 183.95785 * 4 2 1 6 6 C 1.46898 * 110.99820 * 60.00102 * 4 2 1 7 7 C 1.50706 * 109.46563 * 189.99919 * 6 4 2 8 8 O 1.21276 * 120.00368 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99391 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99629 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46834 * 180.02562 * 10 9 7 12 12 H 1.09006 * 112.85012 * 316.18948 * 11 10 9 13 13 C 1.53782 * 113.61845 * 87.50170 * 11 10 9 14 14 C 1.53787 * 87.07978 * 89.11343 * 13 11 10 15 15 H 1.09002 * 113.68806 * 270.87524 * 14 13 11 16 16 N 1.46898 * 113.61257 * 139.98258 * 14 13 11 17 17 C 1.46901 * 111.00131 * 107.50256 * 16 14 13 18 18 C 1.50698 * 109.47345 * 180.02562 * 17 16 14 19 19 O 1.21288 * 119.99844 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00111 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00203 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99662 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00337 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99574 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00159 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47413 * 90.00124 * 25 23 21 27 27 H 1.48505 * 109.47578 * 209.99990 * 25 23 21 28 28 H 1.48505 * 109.47379 * 330.00175 * 25 23 21 29 29 C 1.53784 * 113.61257 * 185.00250 * 11 10 9 30 30 H 1.09006 * 109.46931 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47626 * 300.00015 * 1 2 3 32 32 H 1.08998 * 109.47248 * 60.00660 * 1 2 3 33 33 H 1.08996 * 109.47396 * 239.99535 * 2 1 3 34 34 H 1.08998 * 109.47522 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47033 * 300.00336 * 3 2 1 36 36 H 1.09005 * 109.47124 * 59.99479 * 3 2 1 37 37 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 38 38 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 39 39 H 1.09004 * 109.46970 * 179.97438 * 5 4 2 40 40 H 1.08994 * 109.47410 * 309.99936 * 6 4 2 41 41 H 1.08999 * 109.47216 * 70.00266 * 6 4 2 42 42 H 0.97003 * 120.00555 * 0.02562 * 9 7 6 43 43 H 1.08994 * 109.47011 * 299.99824 * 10 9 7 44 44 H 1.08999 * 109.47094 * 59.99834 * 10 9 7 45 45 H 1.08996 * 113.61527 * 203.66218 * 13 11 10 46 46 H 1.08999 * 113.61074 * 334.56372 * 13 11 10 47 47 H 1.00897 * 111.00084 * 231.45925 * 16 14 13 48 48 H 1.09003 * 109.47005 * 300.00003 * 17 16 14 49 49 H 1.09003 * 109.46653 * 59.99528 * 17 16 14 50 50 H 0.97006 * 119.99944 * 359.97438 * 20 18 17 51 51 H 0.97007 * 119.99547 * 180.02562 * 24 23 21 52 52 H 1.08996 * 113.61683 * 25.42382 * 29 11 10 53 53 H 1.08997 * 113.61681 * 156.25098 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4851 -0.6307 1.2817 6 6 1.5486 -2.0835 1.2334 7 6 1.8580 -2.6858 2.5798 8 8 2.4162 -2.0219 3.4273 9 7 1.5151 -3.9627 2.8415 10 6 1.8153 -4.5481 4.1506 11 6 1.3259 -5.9973 4.1854 12 1 0.3336 -6.1195 3.7513 13 6 2.3586 -7.0091 3.6611 14 6 2.8876 -7.0969 5.1025 15 1 3.6634 -6.3657 5.3296 16 7 3.2500 -8.4596 5.5143 17 6 4.7084 -8.6141 5.5978 18 6 5.0411 -10.0216 6.0213 19 8 4.1508 -10.8175 6.2332 20 7 6.3279 -10.3955 6.1657 21 6 6.6306 -11.6761 6.5504 22 1 5.8378 -12.3851 6.7383 23 6 7.9572 -12.0618 6.6987 24 7 8.9217 -11.1992 6.4696 25 14 8.3695 -13.8064 7.2237 26 1 8.5138 -14.6645 6.0203 27 1 9.6435 -13.8058 7.9867 28 1 7.2791 -14.3361 8.0814 29 6 1.4836 -6.6678 5.5604 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.8029 0.4111 1.3253 38 1 3.9187 -1.1063 0.4020 39 1 3.8209 -1.1505 2.1790 40 1 0.4723 -2.1069 1.0635 41 1 2.0519 -2.6566 0.4547 42 1 1.0696 -4.4941 2.1633 43 1 2.8915 -4.5242 4.3210 44 1 1.3113 -3.9752 4.9290 45 1 1.9161 -7.9378 3.3011 46 1 3.0733 -6.5794 2.9591 47 1 2.8100 -8.7020 6.3893 48 1 5.1514 -8.4144 4.6221 49 1 5.1070 -7.9104 6.3287 50 1 7.0399 -9.7588 5.9965 51 1 9.8479 -11.4686 6.5727 52 1 1.4920 -5.9628 6.3916 53 1 0.8009 -7.5024 5.7200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656241093.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:38 Heat of formation + Delta-G solvation = -71.040308 kcal Electronic energy + Delta-G solvation = -28872.985307 eV Core-core repulsion = 24779.235261 eV Total energy + Delta-G solvation = -4093.750046 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16731 -40.43933 -39.82922 -38.58508 -36.21003 -35.72410 -34.43988 -33.25302 -33.03888 -30.44215 -29.05717 -27.95312 -26.82687 -26.61462 -25.84082 -25.14446 -23.31407 -21.54504 -21.15202 -20.86966 -19.99075 -19.71205 -18.07439 -17.94606 -17.38928 -17.13720 -16.86613 -16.50427 -16.25257 -16.17322 -15.89954 -15.77968 -15.61495 -15.17490 -14.99828 -14.86163 -14.31584 -14.12683 -13.95634 -13.71029 -13.51786 -13.44969 -13.18768 -13.14058 -13.08796 -12.87735 -12.81735 -12.72854 -12.51012 -12.42683 -12.33308 -12.12774 -11.95100 -11.86972 -11.56127 -11.52204 -11.39937 -11.17204 -10.74945 -10.33347 -10.03848 -10.02970 -9.31706 -9.26532 -8.47719 -5.96893 1.37624 1.41360 1.54392 1.68434 2.03455 2.08647 2.28700 2.96460 3.00885 3.19458 3.50622 3.57225 3.70069 3.80299 3.92581 3.93146 3.96135 4.06837 4.28150 4.29565 4.31929 4.34459 4.43238 4.44941 4.52775 4.58165 4.58482 4.59866 4.74102 4.81803 4.82796 4.93242 4.95562 4.96059 5.01434 5.04441 5.10829 5.15047 5.28340 5.32303 5.38359 5.40744 5.41573 5.54041 5.92464 5.97288 6.14376 6.16365 6.42981 6.58586 6.63591 7.11032 7.33431 7.54435 8.09452 8.69677 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.001493 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.531567 B =18754.389446 C =19672.999909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 C -0.146 4.146 4 N -0.540 5.540 5 C 0.021 3.979 6 C 0.034 3.966 7 C 0.508 3.492 8 O -0.570 6.570 9 N -0.717 5.717 10 C 0.143 3.857 11 C -0.103 4.103 12 H 0.108 0.892 13 C -0.117 4.117 14 C 0.046 3.954 15 H 0.073 0.927 16 N -0.667 5.667 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C -0.126 4.126 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.061 0.939 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.416 0.584 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.345 0.655 48 H 0.098 0.902 49 H 0.062 0.938 50 H 0.396 0.604 51 H 0.278 0.722 52 H 0.076 0.924 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.902 23.741 -15.186 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 C -0.204 4.204 4 N -0.265 5.265 5 C -0.127 4.127 6 C -0.097 4.097 7 C 0.295 3.705 8 O -0.448 6.448 9 N -0.371 5.371 10 C 0.019 3.981 11 C -0.122 4.122 12 H 0.126 0.874 13 C -0.155 4.155 14 C -0.064 4.064 15 H 0.091 0.909 16 N -0.300 5.300 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.164 4.164 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.147 0.853 41 H 0.099 0.901 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.164 0.836 48 H 0.117 0.883 49 H 0.080 0.920 50 H 0.230 0.770 51 H 0.087 0.913 52 H 0.095 0.905 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.105 23.661 -14.646 32.663 hybrid contribution 1.426 -0.816 0.289 1.668 sum -15.679 22.845 -14.357 31.206 Atomic orbital electron populations 1.21923 0.93245 1.02610 1.02602 1.21760 0.96556 0.95237 0.89813 1.21897 1.01085 0.94896 1.02493 1.61709 1.11090 1.13354 1.40390 1.22484 0.86965 1.02696 1.00577 1.22112 1.04383 0.89874 0.93308 1.21043 0.77806 0.81486 0.90190 1.90677 1.42961 1.61652 1.49522 1.45875 1.61632 1.12711 1.16862 1.21036 0.99872 0.92183 0.85013 1.22247 1.00454 0.91773 0.97743 0.87391 1.23079 0.97869 0.99049 0.95545 1.23324 0.96772 0.87983 0.98294 0.90947 1.60287 1.06363 1.25050 1.38270 1.21580 0.90980 0.92192 1.02057 1.20877 0.82580 0.91197 0.82844 1.90481 1.47566 1.55749 1.57095 1.41950 1.06388 1.12351 1.60369 1.19692 0.92880 0.89297 1.44671 0.90239 1.26064 0.94566 1.03754 0.96884 1.69683 1.00551 1.36684 1.49246 0.84906 0.77786 0.77020 0.78488 1.19599 1.19527 1.19685 1.23171 0.95706 1.00520 0.97029 0.91621 0.92726 0.90654 0.93391 0.92665 0.90608 0.92748 0.90767 0.95294 0.92054 0.85283 0.90134 0.74732 0.92902 0.91798 0.89654 0.91611 0.83595 0.88342 0.91988 0.77050 0.91292 0.90491 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.99 71.98 0.65 -0.52 16 2 C 0.07 0.79 2.68 44.91 0.12 0.91 16 3 C -0.15 -1.51 8.83 71.98 0.64 -0.88 16 4 N -0.54 -8.42 4.37 -901.60 -3.94 -12.36 16 5 C 0.02 0.36 8.75 127.69 1.12 1.47 16 6 C 0.03 0.41 5.26 85.56 0.45 0.86 16 7 C 0.51 9.20 7.52 87.66 0.66 9.86 16 8 O -0.57 -15.80 14.33 -3.02 -0.04 -15.85 16 9 N -0.72 -9.43 5.56 -463.05 -2.57 -12.01 16 10 C 0.14 2.29 5.35 86.38 0.46 2.75 16 11 C -0.10 -1.43 3.94 -10.27 -0.04 -1.47 16 12 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 13 C -0.12 -2.20 7.41 31.12 0.23 -1.97 16 14 C 0.05 1.03 3.79 45.45 0.17 1.21 16 15 H 0.07 1.64 7.44 -2.39 -0.02 1.62 16 16 N -0.67 -20.90 6.18 -492.83 -3.05 -23.95 16 17 C 0.06 2.27 6.01 85.56 0.51 2.79 16 18 C 0.44 21.20 7.82 87.66 0.69 21.88 16 19 O -0.62 -34.87 15.78 -3.05 -0.05 -34.91 16 20 N -0.57 -29.98 5.29 -306.99 -1.62 -31.60 16 21 C -0.34 -19.33 9.68 84.04 0.81 -18.52 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.23 13.05 21.66 0.28 -49.94 16 25 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 29 C -0.13 -2.18 7.24 31.12 0.23 -1.95 16 30 H 0.06 0.38 6.20 -2.38 -0.01 0.37 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.05 0.60 6.34 -2.39 -0.02 0.58 16 35 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.07 1.19 6.23 -2.39 -0.01 1.18 16 38 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.06 1.40 5.82 -2.38 -0.01 1.38 16 40 H 0.13 0.95 5.83 -2.39 -0.01 0.93 16 41 H 0.08 0.69 8.12 -2.39 -0.02 0.68 16 42 H 0.42 2.84 8.47 -92.71 -0.79 2.06 16 43 H 0.05 1.05 7.39 -2.39 -0.02 1.04 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 47 H 0.34 11.30 8.25 -89.70 -0.74 10.56 16 48 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 49 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 50 H 0.40 19.71 7.90 -92.70 -0.73 18.98 16 51 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 52 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 53 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -74.53 421.57 -3.13 -77.66 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -1.33 Total: 41.54 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 7.16 Total: 16.18 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -10.90 Total: -129.86 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.09 Total: -50.76 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -74.53 -3.13 -77.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656241093.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.619 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds